FN3378-S Chr1 11325125 G-A 0 0 Single Base Substitution 0 HET FN3378-S Chr1 13182412 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g23460 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3378-S Chr1 13497630 G-A 0 0 Single Base Substitution 0 HET FN3378-S Chr1 22134497 22134501 0 0 Deletion 4 HET FN3378-S Chr1 22135484 A-G 0 0 Single Base Substitution 0 HET FN3378-S Chr1 26681075 G-T 0 0 Single Base Substitution 0 HET FN3378-S Chr1 37017537 C-A 0 0 Single Base Substitution 0 HET FN3378-S Chr1 41579563 41579572 0 0 Deletion 9 Homo FN3378-S Chr1 41646115 41646117 0 0 Deletion 2 Homo FN3378-S Chr1 41724814 G-C 0 0 Single Base Substitution 0 Homo FN3378-S Chr10 10150240 T-A 0 0 Single Base Substitution 0 Homo FN3378-S Chr10 18981172 18981174 0 0 Deletion 2 HET FN3378-S Chr10 20074557 A-T 0 0 Single Base Substitution 0 Homo FN3378-S Chr10 20837994 20838024 0 0 Deletion 30 Homo FN3378-S Chr10 20858750 20858751 0 0 Deletion 1 HET FN3378-S Chr11 11128897 11128912 0 0 Deletion 15 Homo FN3378-S Chr11 16519338 16519344 0 0 Deletion 6 Homo FN3378-S Chr11 18560633 G-A 0 0 Single Base Substitution 0 HET FN3378-S Chr11 3683761 C-T 0 0 Single Base Substitution 0 HET FN3378-S Chr12 11482831 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g19700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3378-S Chr2 11298817 A-T 0 0 Single Base Substitution 0 HET FN3378-S Chr2 11298818 G-T 0 0 Single Base Substitution 0 HET FN3378-S Chr2 12431683 G-A 0 0 Single Base Substitution 0 HET FN3378-S Chr2 19511252 A-G 0 0 Single Base Substitution 0 Homo FN3378-S Chr2 20656125 G-A 0 0 Single Base Substitution 0 Homo FN3378-S Chr2 23923001 23938000 0 0 Deletion 14999 FN3378-S Chr2 25409363 G-C 0 0 Single Base Substitution 0 Homo FN3378-S Chr2 5982595 5982596 0 0 Deletion 1 HET FN3378-S Chr3 17411426 17411436 0 0 Deletion 10 HET FN3378-S Chr3 19773192 G-T 0 0 Single Base Substitution 0 Homo FN3378-S Chr3 19773193 T-G 0 0 Single Base Substitution 0 Homo FN3378-S Chr3 34059244 34059245 0 0 Deletion 1 frameshift_variant HET LOC_Os03g59810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3378-S Chr3 389528 Chr2 12572041 0 Translocation 0 FN3378-S Chr3 389528 Chr2 12572041 0 Translocation 0 LOC_Os02g21190 expressed protein FN3378-S Chr3 389905 390850 0 0 Inversion 0 LOC_Os03g01620 expressed protein FN3378-S Chr3 389923 Chr2 12572033 0 Translocation 0 LOC_Os02g21190 expressed protein FN3378-S Chr3 389923 Chr2 12572033 0 Translocation 0 LOC_Os03g01620 expressed protein FN3378-S Chr3 390851 Chr2 12572041 0 Translocation 0 FN3378-S Chr3 390851 Chr2 12572041 0 Translocation 0 LOC_Os02g21190 expressed protein FN3378-S Chr4 2972111 A-T 0 0 Single Base Substitution 0 Homo FN3378-S Chr4 5355804 C-T 0 0 Single Base Substitution 0 HET FN3378-S Chr5 12894944 T-C 0 0 Single Base Substitution 0 HET FN3378-S Chr5 16452214 16452246 0 0 Deletion 32 frameshift_variant HET LOC_Os05g28120 transposon protein, putative, unclassified, expressed FN3378-S Chr5 29184762 29184764 0 0 Insertion 2 HET FN3378-S Chr5 6988815 C-T 0 0 Single Base Substitution 0 HET FN3378-S Chr6 10148788 10148791 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os06g17490 expressed protein FN3378-S Chr6 153959 C-T 0 0 Single Base Substitution 0 Homo FN3378-S Chr6 26638488 26638505 0 0 Deletion 17 HET FN3378-S Chr6 9734595 C-G 0 0 Single Base Substitution 0 Homo FN3378-S Chr7 10071021 10071030 0 0 Deletion 9 inframe_deletion HET LOC_Os07g17140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3378-S Chr7 14560068 14560077 0 0 Deletion 9 Homo FN3378-S Chr7 14898580 T-C 0 0 Single Base Substitution 0 Homo FN3378-S Chr7 20923497 C-T 0 0 Single Base Substitution 0 HET FN3378-S Chr7 22326100 C-G 0 0 Single Base Substitution 0 HET FN3378-S Chr7 22639001 22689000 0 0 Deletion 49999 LOC_Os07g37750 ATMIN7, putative, expressed FN3378-S Chr7 22639001 22689000 0 0 Deletion 49999 LOC_Os07g37760 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed FN3378-S Chr7 22639001 22689000 0 0 Deletion 49999 LOC_Os07g37790 expressed protein FN3378-S Chr7 22639001 22689000 0 0 Deletion 49999 LOC_Os07g37800 bromodomain domain containing protein, expressed FN3378-S Chr7 22639001 22689000 0 0 Deletion 49999 LOC_Os07g37810 STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed FN3378-S Chr7 22639001 22689000 0 0 Deletion 49999 LOC_Os07g37820 expressed protein FN3378-S Chr7 22639001 22689000 0 0 Deletion 49999 LOC_Os07g37830 peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed FN3378-S Chr7 4186718 4186722 0 0 Deletion 4 HET FN3378-S Chr7 7677868 7677869 0 0 Deletion 1 HET FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19050 expressed protein FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19060 retrotransposon protein, putative, unclassified, expressed FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19070 retrotransposon protein, putative, unclassified FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19080 retrotransposon protein, putative, unclassified, expressed FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19100 expressed protein FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19105 expressed protein FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19110 expressed protein FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19114 expressed protein FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19120 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19130 hypothetical protein FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19140 adenylate kinase family protein, putative, expressed FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19150 expressed protein FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19160 transmembrane 9 superfamily member, putative, expressed FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19170 G-patch domain containing protein, expressed FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19180 transposon protein, putative, unclassified, expressed FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19190 conserved hypothetical protein FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19200 expressed protein FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19210 expressed protein FN3378-S Chr8 11367001 11500000 0 0 Deletion 132999 LOC_Os08g19220 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3378-S Chr8 13578759 13578760 0 0 Deletion 1 HET FN3378-S Chr8 2246165 2246172 0 0 Deletion 7 Homo FN3378-S Chr8 22499120 22499130 0 0 Deletion 10 Homo FN3378-S Chr8 22726711 22726720 0 0 Deletion 9 Homo FN3378-S Chr8 2624816 A-G 0 0 Single Base Substitution 0 Homo FN3378-S Chr8 3228287 Chr5 28218490 0 Translocation 0 FN3378-S Chr8 3230970 Chr6 16851647 0 Translocation 0 FN3378-S Chr8 3231083 Chr5 28218484 0 Translocation 0 FN3378-S Chr8 5041061 Chr1 1889927 0 Translocation 0 FN3378-S Chr8 5041061 Chr1 1889927 0 Translocation 0 LOC_Os01g04260 fatty acid hydroxylase, putative, expressed FN3378-S Chr8 5041279 Chr1 1889895 0 Translocation 0 FN3378-S Chr8 5041279 Chr1 1889895 0 Translocation 0 LOC_Os01g04260 fatty acid hydroxylase, putative, expressed FN3378-S Chr8 5147996 5315686 0 0 Inversion 0 LOC_Os08g08860 CRS2-associated factor 2, mitochondrial precursor, putative, expressed FN3378-S Chr8 5147996 5315686 0 0 Inversion 0 LOC_Os08g09170 expressed protein FN3378-S Chr8 5149548 5315690 0 0 Inversion 0 LOC_Os08g08860 CRS2-associated factor 2, mitochondrial precursor, putative, expressed FN3378-S Chr8 5149548 5315690 0 0 Inversion 0 LOC_Os08g09170 expressed protein FN3378-S Chr9 9803322 Chr1 1889903 0 Translocation 0 LOC_Os01g04260 fatty acid hydroxylase, putative, expressed FN3378-S Chr9 9803322 Chr1 1889903 0 Translocation 0 LOC_Os09g16050 ankyrin repeat family protein, putative, expressed FN3378-S Chr9 9803804 Chr8 5041278 0 Translocation 0 LOC_Os09g16050 ankyrin repeat family protein, putative, expressed