FN3380-S Chr1 10467084 G-A 0 0 Single Base Substitution 0 HET FN3380-S Chr1 15602261 15602262 0 0 Insertion 1 frameshift_variant HET LOC_Os01g27910 retrotransposon protein, putative, unclassified FN3380-S Chr1 23056757 G-A 0 0 Single Base Substitution 0 HET FN3380-S Chr1 34156081 34156087 0 0 Deletion 6 Homo FN3380-S Chr1 7360721 A-T 0 0 Single Base Substitution 0 HET FN3380-S Chr10 1238340 A-G 0 0 Single Base Substitution 0 Homo FN3380-S Chr10 13117777 13117779 0 0 Deletion 2 HET FN3380-S Chr10 18536258 G-A 0 0 Single Base Substitution 0 HET FN3380-S Chr10 7670349 7670350 0 0 Insertion 1 HET FN3380-S Chr11 10057103 10057105 0 0 Insertion 2 HET FN3380-S Chr11 28186815 Chr3 6490614 0 Translocation 0 FN3380-S Chr11 9777744 C-T 0 0 Single Base Substitution 0 HET FN3380-S Chr12 16725106 C-T 0 0 Single Base Substitution 0 HET FN3380-S Chr12 16928077 Chr6 17693106 0 Translocation 0 LOC_Os12g28630 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr12 18304455 18801974 0 0 Inversion 0 LOC_Os12g30490 ribosomal protein L4, putative, expressed FN3380-S Chr12 18304463 18801809 0 0 Inversion 0 LOC_Os12g30490 ribosomal protein L4, putative, expressed FN3380-S Chr12 22608654 C-T 0 0 Single Base Substitution 0 HET FN3380-S Chr12 5723168 T-C 0 0 Single Base Substitution 0 HET FN3380-S Chr2 22367166 A-C 0 0 Single Base Substitution 0 START_LOST HET LOC_Os02g37030 protein binding protein, putative, expressed FN3380-S Chr2 28972665 C-T 0 0 Single Base Substitution 0 HET FN3380-S Chr2 30421765 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g49760 potassium transporter, putative, expressed FN3380-S Chr2 30421766 G-C 0 0 Single Base Substitution 0 HET FN3380-S Chr2 3090723 T-A 0 0 Single Base Substitution 0 HET FN3380-S Chr3 12705674 C-T 0 0 Single Base Substitution 0 Homo FN3380-S Chr3 15013438 A-G 0 0 Single Base Substitution 0 HET FN3380-S Chr3 17301790 17301797 0 0 Deletion 7 HET FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33590 interferon-related developmental regulator, putative, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33600 retrotransposon, putative, centromere-specific, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33610 retrotransposon, putative, centromere-specific, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33620 retrotransposon protein, putative, Ty3-gypsy subclass FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33640 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33650 AGO7, putative, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33660 expressed protein FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33690 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33700 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33710 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33720 retrotransposon protein, putative, Ty3-gypsy subclass FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33750 retrotransposon protein, putative, LINE subclass, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33760 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33770 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33790 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33800 expressed protein FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33810 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33819 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33828 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33837 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33850 retrotransposon protein, putative, Ty1-copia subclass FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33880 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33890 retrotransposon protein, putative, unclassified FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33900 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33920 conserved hypothetical protein FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33930 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33940 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33950 retrotransposon protein, putative, unclassified FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33960 retrotransposon protein, putative, unclassified FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33970 retrotransposon, putative, centromere-specific FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33980 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g33990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34000 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34020 retrotransposon, putative, centromere-specific, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34030 hypothetical protein FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34040 ribosomal protein, putative, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34070 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34090 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34096 retrotransposon protein, putative, unclassified FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34102 retrotransposon, putative, centromere-specific FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34120 hypothetical protein FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34129 retrotransposon protein, putative, Ty1-copia subclass FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34140 retrotransposon protein, putative, Ty1-copia subclass FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34150 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34160 retrotransposon protein, putative, unclassified FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34170 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34210 retrotransposon protein, putative, unclassified FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34220 retrotransposon protein, putative, Ty3-gypsy subclass FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34230 expressed protein FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34240 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34250 retrotransposon protein, putative, unclassified FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34260 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34270 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34280 expressed protein FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34300 TMS membrane protein/tumour differentially expressed protein, putative, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34310 expressed protein FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g34320 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 19194001 19546000 0 0 Deletion 351999 LOC_Os03g35326 retrotransposon protein, putative, unclassified, expressed FN3380-S Chr3 27444505 T-G 0 0 Single Base Substitution 0 Homo FN3380-S Chr3 29627928 29627929 0 0 Deletion 1 HET FN3380-S Chr3 33702400 G-C 0 0 Single Base Substitution 0 HET FN3380-S Chr3 8964965 G-A 0 0 Single Base Substitution 0 HET FN3380-S Chr4 11739351 11739405 0 0 Insertion 54 HET FN3380-S Chr4 11806445 G-A 0 0 Single Base Substitution 0 Homo FN3380-S Chr4 13243604 G-T 0 0 Single Base Substitution 0 Homo FN3380-S Chr4 16360086 T-C 0 0 Single Base Substitution 0 Homo FN3380-S Chr4 17466071 17466078 0 0 Deletion 7 HET FN3380-S Chr4 25453134 G-A 0 0 Single Base Substitution 0 HET FN3380-S Chr4 28696437 G-T 0 0 Single Base Substitution 0 HET FN3380-S Chr4 28696440 G-T 0 0 Single Base Substitution 0 HET FN3380-S Chr4 29716975 30455775 0 0 Inversion 0 LOC_Os04g49850 expressed protein FN3380-S Chr4 30924724 A-G 0 0 Single Base Substitution 0 HET FN3380-S Chr4 32401162 32401163 0 0 Deletion 1 HET FN3380-S Chr5 12402784 C-T 0 0 Single Base Substitution 0 HET FN3380-S Chr5 20773130 20773132 0 0 Insertion 2 HET FN3380-S Chr5 25719034 A-T 0 0 Single Base Substitution 0 HET FN3380-S Chr5 2595992 2595993 0 0 Deletion 1 frameshift_variant HET LOC_Os05g05270 sucrose-phosphatase, putative, expressed FN3380-S Chr6 1054906 G-C 0 0 Single Base Substitution 0 HET FN3380-S Chr6 16518926 C-A 0 0 Single Base Substitution 0 HET FN3380-S Chr6 16519645 A-T 0 0 Single Base Substitution 0 HET FN3380-S Chr6 16519646 G-T 0 0 Single Base Substitution 0 HET FN3380-S Chr6 17555455 C-T 0 0 Single Base Substitution 0 HET FN3380-S Chr6 17693107 Chr2 34434122 0 Translocation 0 FN3380-S Chr6 17693107 Chr2 34434122 0 Translocation 0 LOC_Os02g56270 ENTH domain containing protein, expressed FN3380-S Chr6 17693810 Chr2 34434129 0 Translocation 0 FN3380-S Chr6 17693810 Chr2 34434129 0 Translocation 0 LOC_Os02g56270 ENTH domain containing protein, expressed FN3380-S Chr7 121880 T-C 0 0 Single Base Substitution 0 HET FN3380-S Chr7 16491 C-T 0 0 Single Base Substitution 0 HET FN3380-S Chr7 19416460 Chr1 34821287 0 Translocation 0 FN3380-S Chr7 19980782 A-G 0 0 Single Base Substitution 0 HET FN3380-S Chr7 256228 T-A 0 0 Single Base Substitution 0 HET FN3380-S Chr7 26294640 Chr2 19409558 0 Translocation 0 LOC_Os02g32690 pleiotropic drug resistance protein 15, putative, expressed FN3380-S Chr7 26294640 Chr2 19409558 0 Translocation 0 LOC_Os07g43980 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3380-S Chr7 6765957 C-T 0 0 Single Base Substitution 0 HET FN3380-S Chr8 10518505 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g17170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3380-S Chr8 21331080 T-A 0 0 Single Base Substitution 0 HET FN3380-S Chr9 20293237 G-T 0 0 Single Base Substitution 0 Homo FN3380-S Chr9 20783250 20783263 0 0 Deletion 13 frameshift_variant HET LOC_Os09g36090 plus-3 domain containing protein, expressed