FN3389-S Chr1 13613325 C-T 0 0 Single Base Substitution 0 HET FN3389-S Chr1 17132446 G-C 0 0 Single Base Substitution 0 HET FN3389-S Chr1 19076205 19076206 0 0 Deletion 1 HET FN3389-S Chr1 20216697 20216698 0 0 Deletion 1 frameshift_variant HET LOC_Os01g36420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3389-S Chr1 24269987 G-A 0 0 Single Base Substitution 0 HET FN3389-S Chr1 37117047 G-A 0 0 Single Base Substitution 0 HET FN3389-S Chr1 38453771 C-A 0 0 Single Base Substitution 0 HET FN3389-S Chr1 40309661 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g69810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3389-S Chr10 12528896 12528897 0 0 Insertion 1 HET FN3389-S Chr10 19623453 C-T 0 0 Single Base Substitution 0 HET FN3389-S Chr10 7781187 G-A 0 0 Single Base Substitution 0 HET FN3389-S Chr10 9339654 T-C 0 0 Single Base Substitution 0 Homo FN3389-S Chr11 10158176 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os11g18070 retrotransposon protein, putative, unclassified, expressed FN3389-S Chr11 11538789 T-C 0 0 Single Base Substitution 0 HET FN3389-S Chr11 12890937 T-C 0 0 Single Base Substitution 0 HET FN3389-S Chr11 15312690 15312692 0 0 Deletion 2 HET FN3389-S Chr11 1886689 1886712 0 0 Deletion 23 frameshift_variant Homo LOC_Os11g04500 cytochrome c-type biogenesis protein dbsD-like, putative, expressed FN3389-S Chr11 19966001 19994000 0 0 Deletion 27999 LOC_Os11g34120 exportin 1, putative, expressed FN3389-S Chr11 19966001 19994000 0 0 Deletion 27999 LOC_Os11g34130 expressed protein FN3389-S Chr11 19966001 19994000 0 0 Deletion 27999 LOC_Os11g34140 expressed protein FN3389-S Chr11 19966001 19994000 0 0 Deletion 27999 LOC_Os11g34150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3389-S Chr11 19994200 Chr7 11068963 0 Translocation 0 LOC_Os07g18720 tetratricopeptide repeat containing protein, putative, expressed FN3389-S Chr11 19994200 Chr7 11068963 0 Translocation 0 LOC_Os11g34150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3389-S Chr11 19995382 Chr7 11068962 0 Translocation 0 LOC_Os07g18720 tetratricopeptide repeat containing protein, putative, expressed FN3389-S Chr11 19995382 Chr7 11068962 0 Translocation 0 LOC_Os11g34150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3389-S Chr11 21240146 A-G 0 0 Single Base Substitution 0 HET FN3389-S Chr11 22570691 Chr7 4765790 0 Translocation 0 LOC_Os11g38050 phosphoesterase family protein, putative, expressed FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14330 retrotransposon protein, putative, unclassified, expressed FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14360 retrotransposon, putative, centromere-specific FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14370 hypothetical protein FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14380 resistance protein LR10, putative, expressed FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14390 expressed protein FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14400 polygalacturonase, putative, expressed FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14410 polygalacturonase, putative, expressed FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14420 inactive receptor kinase At1g27190 precursor, putative, expressed FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14430 APOBEC1 complementation factor, putative, expressed FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14440 expressed protein FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14450 retrotransposon protein, putative, unclassified, expressed FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14470 transposon protein, putative, unclassified FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14480 expressed protein FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14490 expressed protein FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14500 expressed protein FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14510 transposon protein, putative, unclassified, expressed FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14520 expressed protein FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14525 expressed protein FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14530 expressed protein FN3389-S Chr11 8039001 8173000 0 0 Deletion 133999 LOC_Os11g14544 expressed protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15370 sulfotransferase domain containing protein, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15390 hypothetical protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15400 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15410 S-adenosyl-L-methionine:benzoic acid/salicylic acid carboxyl methyltransferase, putative, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15420 expressed protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15440 retrotransposon protein, putative, unclassified, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15450 retrotransposon protein, putative, unclassified FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15460 expressed protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15470 expressed protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15490 expressed protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15500 stripe rust resistance protein Yr10, putative, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15510 expressed protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15520 OsSub62 - Putative Subtilisin homologue, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15530 conserved hypothetical protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15540 hypothetical protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15550 retrotransposon protein, putative, Ty3-gypsy subclass FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15570 Ser/Thr protein phosphatase family protein, putative, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15580 hypothetical protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15590 expressed protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15600 hypothetical protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15610 hypothetical protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15620 OsFBX420 - F-box domain containing protein, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15624 expressed protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15630 retrotransposon protein, putative, unclassified, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15640 expressed protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15660 hypothetical protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15670 NBS-LRR disease resistance protein, putative, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15680 retrotransposon protein, putative, Ty3-gypsy subclass FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15700 NB-ARC domain containing protein, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15710 hypothetical protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15720 expressed protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15730 hypothetical protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15740 hypothetical protein FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15750 retrotransposon protein, putative, unclassified, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g15755 transposon protein, putative, unclassified, expressed FN3389-S Chr11 8700001 8938000 0 0 Deletion 237999 LOC_Os11g16246 retrotransposon protein, putative, unclassified FN3389-S Chr12 10109022 G-A 0 0 Single Base Substitution 0 Homo FN3389-S Chr2 15926629 G-C 0 0 Single Base Substitution 0 HET FN3389-S Chr2 23117170 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g38220 eukaryotic translation initiation factor 4B, putative, expressed FN3389-S Chr2 23223413 G-T 0 0 Single Base Substitution 0 HET FN3389-S Chr2 29696029 C-T 0 0 Single Base Substitution 0 HET FN3389-S Chr2 34259468 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g55970 ANTH, putative, expressed FN3389-S Chr3 15780243 15780245 0 0 Insertion 2 HET FN3389-S Chr3 20265407 G-A 0 0 Single Base Substitution 0 HET FN3389-S Chr3 27547311 T-C 0 0 Single Base Substitution 0 HET FN3389-S Chr3 28282564 28282575 0 0 Deletion 11 frameshift_variant Homo LOC_Os03g49660 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3389-S Chr3 28845139 G-C 0 0 Single Base Substitution 0 HET FN3389-S Chr3 29727443 29727445 0 0 Deletion 2 HET FN3389-S Chr3 614294 614296 0 0 Deletion 2 HET FN3389-S Chr3 6571963 6857037 0 0 Inversion 0 FN3389-S Chr3 6571979 6857053 0 0 Inversion 0 FN3389-S Chr3 6715595 G-A 0 0 Single Base Substitution 0 HET FN3389-S Chr4 14843758 G-A 0 0 Single Base Substitution 0 HET FN3389-S Chr4 1945321 1945348 0 0 Deletion 27 inframe_deletion HET LOC_Os04g04180 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3389-S Chr4 22884585 22884588 0 0 Deletion 3 HET FN3389-S Chr4 2571328 2571330 0 0 Deletion 2 frameshift_variant HET LOC_Os04g05160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3389-S Chr4 27136649 27136651 0 0 Deletion 2 HET FN3389-S Chr4 29673846 29673851 0 0 Deletion 5 HET FN3389-S Chr4 31871009 C-T 0 0 Single Base Substitution 0 HET FN3389-S Chr4 35273511 T-C 0 0 Single Base Substitution 0 Homo FN3389-S Chr5 11807817 T-A 0 0 Single Base Substitution 0 HET FN3389-S Chr5 1453916 1453920 0 0 Deletion 4 Homo FN3389-S Chr5 17480721 C-T 0 0 Single Base Substitution 0 HET FN3389-S Chr5 24622183 Chr4 11340029 0 Translocation 0 FN3389-S Chr5 27444179 27444194 0 0 Deletion 15 Homo FN3389-S Chr6 1 19000 0 0 Deletion 18999 LOC_Os06g01010 retrotransposon protein, putative, Ty3-gypsy subclass FN3389-S Chr6 1 19000 0 0 Deletion 18999 LOC_Os06g01020 retrotransposon protein, putative, Ty3-gypsy subclass FN3389-S Chr6 1 19000 0 0 Deletion 18999 LOC_Os06g01030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3389-S Chr6 1 19000 0 0 Deletion 18999 LOC_Os06g01040 retrotransposon protein, putative, unclassified, expressed FN3389-S Chr6 89001 98000 0 0 Deletion 8999 LOC_Os06g01090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3389-S Chr7 12476927 12476929 0 0 Deletion 2 HET FN3389-S Chr7 17390013 17390020 0 0 Deletion 7 HET FN3389-S Chr7 17696528 T-C 0 0 Single Base Substitution 0 HET FN3389-S Chr7 4450627 4450628 0 0 Insertion 1 HET FN3389-S Chr7 5167348 5167355 0 0 Deletion 7 HET FN3389-S Chr7 5205367 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g09770 retrotransposon protein, putative, unclassified, expressed FN3389-S Chr7 7515001 7552000 0 0 Deletion 36999 LOC_Os07g13130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3389-S Chr7 7515001 7552000 0 0 Deletion 36999 LOC_Os07g13140 retrotransposon protein, putative, unclassified, expressed FN3389-S Chr7 7515001 7552000 0 0 Deletion 36999 LOC_Os07g13160 expressed protein FN3389-S Chr7 7515001 7552000 0 0 Deletion 36999 LOC_Os07g13170 AP2 domain containing protein, expressed FN3389-S Chr7 7515001 7552000 0 0 Deletion 36999 LOC_Os07g13180 expressed protein FN3389-S Chr7 9697177 9697184 0 0 Deletion 7 HET FN3389-S Chr8 13547081 T-C 0 0 Single Base Substitution 0 HET FN3389-S Chr8 18540077 18540082 0 0 Deletion 5 frameshift_variant HET LOC_Os08g30140 expressed protein FN3389-S Chr8 23344567 C-T 0 0 Single Base Substitution 0 HET FN3389-S Chr9 18149451 18149455 0 0 Insertion 4 HET FN3389-S Chr9 18605030 C-T 0 0 Single Base Substitution 0 HET FN3389-S Chr9 19929083 Chr4 26648533 0 Translocation 0 LOC_Os04g45040 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3389-S Chr9 19929083 Chr4 26648533 0 Translocation 0 LOC_Os09g33740 Zinc finger, ZZ type domain containing protein, expressed FN3389-S Chr9 2369161 2369164 0 0 Deletion 3 splice_donor_variant&splice_region_variant&intron_variant Homo LOC_Os09g04450 expressed protein FN3389-S Chr9 2399443 G-A 0 0 Single Base Substitution 0 Homo