FN3396-S Chr1 11155665 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g19670 expressed protein FN3396-S Chr1 15043653 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g27000 retrotransposon protein, putative, unclassified, expressed FN3396-S Chr1 17293337 17293866 0 0 Inversion 0 FN3396-S Chr1 20221263 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g36430 retrotransposon protein, putative, unclassified, expressed FN3396-S Chr1 22136096 A-T 0 0 Single Base Substitution 0 HET FN3396-S Chr1 22136097 G-A 0 0 Single Base Substitution 0 HET FN3396-S Chr1 22651497 22651499 0 0 Deletion 2 HET FN3396-S Chr1 25031432 G-A 0 0 Single Base Substitution 0 HET FN3396-S Chr1 31864910 A-T 0 0 Single Base Substitution 0 HET FN3396-S Chr1 34205232 T-A 0 0 Single Base Substitution 0 HET FN3396-S Chr1 37019436 T-C 0 0 Single Base Substitution 0 HET FN3396-S Chr1 9632093 C-G 0 0 Single Base Substitution 0 HET FN3396-S Chr10 11258249 C-A 0 0 Single Base Substitution 0 HET FN3396-S Chr10 14374635 14374641 0 0 Deletion 6 HET FN3396-S Chr11 134533 T-C 0 0 Single Base Substitution 0 HET FN3396-S Chr11 24709440 Chr7 7793849 0 Translocation 0 FN3396-S Chr11 24709440 Chr7 7793849 0 Translocation 0 LOC_Os07g13590 expressed protein FN3396-S Chr11 4179880 T-A 0 0 Single Base Substitution 0 HET FN3396-S Chr11 7385017 A-G 0 0 Single Base Substitution 0 HET FN3396-S Chr12 15028134 15028135 0 0 Deletion 1 frameshift_variant Homo LOC_Os12g25910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3396-S Chr12 25134919 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g40610 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3396-S Chr2 13040696 C-G 0 0 Single Base Substitution 0 HET FN3396-S Chr2 17454917 17454919 0 0 Insertion 2 Homo FN3396-S Chr2 17623 T-A 0 0 Single Base Substitution 0 Homo FN3396-S Chr2 18552694 18552760 0 0 Insertion 66 HET FN3396-S Chr2 22253041 22253043 0 0 Deletion 2 HET FN3396-S Chr2 26164167 C-A 0 0 Single Base Substitution 0 HET FN3396-S Chr2 2817683 2817686 0 0 Deletion 3 Homo FN3396-S Chr2 8336961 8336971 0 0 Deletion 10 Homo FN3396-S Chr2 8421751 A-T 0 0 Single Base Substitution 0 Homo FN3396-S Chr2 955876 A-T 0 0 Single Base Substitution 0 Homo FN3396-S Chr3 16805002 16805010 0 0 Deletion 8 frameshift_variant HET LOC_Os03g29480 nodulation-signaling pathway 1 protein, putative, expressed FN3396-S Chr3 26223580 26223581 0 0 Deletion 1 HET FN3396-S Chr3 26225010 C-G 0 0 Single Base Substitution 0 HET FN3396-S Chr3 26453196 T-A 0 0 Single Base Substitution 0 Homo FN3396-S Chr3 26453197 G-C 0 0 Single Base Substitution 0 Homo FN3396-S Chr3 26455471 C-A 0 0 Single Base Substitution 0 Homo FN3396-S Chr3 28345469 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g49790 pattern formation protein EMB30, putative, expressed FN3396-S Chr3 3008298 G-T 0 0 Single Base Substitution 0 HET FN3396-S Chr4 17819989 17819990 0 0 Deletion 1 HET FN3396-S Chr4 28530621 29437206 0 0 Inversion 0 FN3396-S Chr4 28530621 29437208 0 0 Inversion 0 FN3396-S Chr4 30867235 30867236 0 0 Deletion 1 HET FN3396-S Chr4 3929575 3929577 0 0 Deletion 2 HET FN3396-S Chr5 15337240 15337241 0 0 Insertion 1 HET FN3396-S Chr5 17385716 C-T 0 0 Single Base Substitution 0 HET FN3396-S Chr5 17725244 17725245 0 0 Deletion 1 Homo FN3396-S Chr5 18350050 C-T 0 0 Single Base Substitution 0 Homo FN3396-S Chr5 2048550 C-T 0 0 Single Base Substitution 0 HET FN3396-S Chr5 21361896 21361910 0 0 Deletion 14 HET FN3396-S Chr6 12124052 T-C 0 0 Single Base Substitution 0 HET FN3396-S Chr6 12124055 G-A 0 0 Single Base Substitution 0 HET FN3396-S Chr6 15339830 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os06g26234 1,4-alpha-glucan-branching enzyme, putative, expressed FN3396-S Chr6 15586739 A-G 0 0 Single Base Substitution 0 HET FN3396-S Chr6 17270453 Chr2 22538981 0 Translocation 0 FN3396-S Chr6 17727839 T-C 0 0 Single Base Substitution 0 HET FN3396-S Chr6 2342956 G-A 0 0 Single Base Substitution 0 HET FN3396-S Chr6 25097622 C-T 0 0 Single Base Substitution 0 HET FN3396-S Chr6 26082094 26082095 0 0 Deletion 1 Homo FN3396-S Chr6 29723571 29723575 0 0 Insertion 4 HET FN3396-S Chr7 11837358 Chr4 19098703 0 Translocation 0 LOC_Os07g20500 retrotransposon protein, putative, unclassified, expressed FN3396-S Chr7 14286025 G-T 0 0 Single Base Substitution 0 HET FN3396-S Chr7 16907619 T-G 0 0 Single Base Substitution 0 HET FN3396-S Chr7 19435455 19435460 0 0 Deletion 5 HET FN3396-S Chr7 22574973 22574974 0 0 Deletion 1 Homo FN3396-S Chr7 7023345 7023346 0 0 Deletion 1 HET FN3396-S Chr8 18539454 C-A 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os08g30140 expressed protein FN3396-S Chr8 21354612 T-A 0 0 Single Base Substitution 0 Homo FN3396-S Chr8 26792811 26792830 0 0 Deletion 19 HET FN3396-S Chr8 4437435 T-C 0 0 Single Base Substitution 0 HET FN3396-S Chr8 8121411 8121418 0 0 Deletion 7 Homo FN3396-S Chr9 1306635 A-T 0 0 Single Base Substitution 0 HET FN3396-S Chr9 15530062 15530531 0 0 Inversion 0 FN3396-S Chr9 16837624 G-A 0 0 Single Base Substitution 0 Homo FN3396-S Chr9 17820370 17820374 0 0 Deletion 4 Homo FN3396-S Chr9 17868977 17868988 0 0 Deletion 11 HET FN3396-S Chr9 17991996 17992012 0 0 Deletion 16 HET FN3396-S Chr9 6155134 A-G 0 0 Single Base Substitution 0 HET