FN3401-S Chr1 15306803 15306804 0 0 Deletion 1 HET FN3401-S Chr1 23544967 T-C 0 0 Single Base Substitution 0 HET FN3401-S Chr1 25017148 T-G 0 0 Single Base Substitution 0 Homo FN3401-S Chr1 26495943 26495944 0 0 Insertion 1 HET FN3401-S Chr1 33699610 T-C 0 0 Single Base Substitution 0 HET FN3401-S Chr1 4261323 4261326 0 0 Deletion 3 HET FN3401-S Chr1 5943189 5943201 0 0 Insertion 12 HET FN3401-S Chr10 11077321 T-C 0 0 Single Base Substitution 0 HET FN3401-S Chr10 5272302 5272304 0 0 Insertion 2 HET FN3401-S Chr10 6638914 6638916 0 0 Insertion 2 HET FN3401-S Chr10 9113846 A-G 0 0 Single Base Substitution 0 HET FN3401-S Chr11 1617085 T-C 0 0 Single Base Substitution 0 HET FN3401-S Chr11 22323452 C-T 0 0 Single Base Substitution 0 HET FN3401-S Chr11 24202527 A-G 0 0 Single Base Substitution 0 HET FN3401-S Chr11 27121482 27121485 0 0 Insertion 3 HET FN3401-S Chr11 6187385 6187393 0 0 Deletion 8 Homo FN3401-S Chr12 13186904 T-C 0 0 Single Base Substitution 0 HET FN3401-S Chr12 13976891 G-A 0 0 Single Base Substitution 0 HET FN3401-S Chr12 1514259 C-G 0 0 Single Base Substitution 0 HET FN3401-S Chr12 20323249 T-A 0 0 Single Base Substitution 0 Homo FN3401-S Chr12 21436834 G-A 0 0 Single Base Substitution 0 Homo FN3401-S Chr12 24972833 A-G 0 0 Single Base Substitution 0 HET FN3401-S Chr12 5704189 5704534 0 0 Inversion 0 LOC_Os12g10670 AAA-type ATPase family protein, putative, expressed FN3401-S Chr2 14519793 14519798 0 0 Deletion 5 HET FN3401-S Chr2 14569994 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g25090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3401-S Chr2 19338328 T-C 0 0 Single Base Substitution 0 HET FN3401-S Chr2 22544990 T-C 0 0 Single Base Substitution 0 HET FN3401-S Chr2 22673216 C-T 0 0 Single Base Substitution 0 HET FN3401-S Chr3 17277741 Chr2 16785005 0 Translocation 0 LOC_Os02g28400 retrotransposon protein, putative, unclassified, expressed FN3401-S Chr3 17277741 Chr2 16785005 0 Translocation 0 LOC_Os03g30270 retrotransposon, putative, centromere-specific, expressed FN3401-S Chr3 4854054 4854059 0 0 Deletion 5 HET FN3401-S Chr3 8392695 G-A 0 0 Single Base Substitution 0 HET FN3401-S Chr4 10895781 G-A 0 0 Single Base Substitution 0 HET FN3401-S Chr4 16039077 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g27094 retrotransposon protein, putative, unclassified, expressed FN3401-S Chr4 1615843 A-C 0 0 Single Base Substitution 0 HET FN3401-S Chr4 21515453 21515461 0 0 Deletion 8 Homo FN3401-S Chr4 21836377 G-A 0 0 Single Base Substitution 0 Homo FN3401-S Chr4 23687339 G-A 0 0 Single Base Substitution 0 Homo FN3401-S Chr4 25834734 C-T 0 0 Single Base Substitution 0 Homo FN3401-S Chr4 4430400 4430406 0 0 Deletion 6 HET FN3401-S Chr4 9444454 C-T 0 0 Single Base Substitution 0 HET FN3401-S Chr5 21029179 G-A 0 0 Single Base Substitution 0 HET FN3401-S Chr5 22328354 C-A 0 0 Single Base Substitution 0 Homo FN3401-S Chr5 25618703 T-C 0 0 Single Base Substitution 0 Homo FN3401-S Chr5 9059493 9059499 0 0 Deletion 6 HET FN3401-S Chr5 9072093 T-A 0 0 Single Base Substitution 0 HET FN3401-S Chr6 11237754 11237763 0 0 Deletion 9 Homo FN3401-S Chr6 19710507 C-T 0 0 Single Base Substitution 0 HET FN3401-S Chr6 23079958 A-T 0 0 Single Base Substitution 0 HET FN3401-S Chr6 23209599 23209606 0 0 Deletion 7 frameshift_variant Homo LOC_Os06g39090 transposon protein, putative, unclassified, expressed FN3401-S Chr6 27380575 A-G 0 0 Single Base Substitution 0 HET FN3401-S Chr6 7463739 C-T 0 0 Single Base Substitution 0 HET FN3401-S Chr6 8334001 8374000 0 0 Deletion 39999 LOC_Os06g14770 expressed protein FN3401-S Chr6 8334001 8374000 0 0 Deletion 39999 LOC_Os06g14780 expressed protein FN3401-S Chr7 14438104 C-T 0 0 Single Base Substitution 0 HET FN3401-S Chr7 23504029 C-G 0 0 Single Base Substitution 0 HET FN3401-S Chr7 28415632 C-T 0 0 Single Base Substitution 0 HET FN3401-S Chr7 6449242 G-A 0 0 Single Base Substitution 0 HET FN3401-S Chr7 795463 A-C 0 0 Single Base Substitution 0 HET FN3401-S Chr7 9234496 A-G 0 0 Single Base Substitution 0 HET FN3401-S Chr8 21101095 21101096 0 0 Deletion 1 HET FN3401-S Chr8 22145971 A-G 0 0 Single Base Substitution 0 HET FN3401-S Chr8 28366463 28366464 0 0 Insertion 1 HET FN3401-S Chr8 5490189 G-A 0 0 Single Base Substitution 0 HET FN3401-S Chr8 763273 T-C 0 0 Single Base Substitution 0 HET FN3401-S Chr8 8361866 G-T 0 0 Single Base Substitution 0 HET FN3401-S Chr8 95845 95849 0 0 Insertion 4 HET FN3401-S Chr9 19914318 19914329 0 0 Deletion 11 frameshift_variant&splice_region_variant Homo LOC_Os09g33710 Os9bglu33 - beta-glucosidase homologue, similar to G. max hydroxyisourate hydrolase, expressed FN3401-S Chr9 2346917 T-C 0 0 Single Base Substitution 0 HET FN3401-S Chr9 333551 T-C 0 0 Single Base Substitution 0 HET FN3401-S Chr9 8348239 8348240 0 0 Insertion 1 HET