FN3416-S Chr1 16630862 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g29680 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3416-S Chr1 18113040 18113048 0 0 Deletion 8 Homo FN3416-S Chr1 26353142 G-T 0 0 Single Base Substitution 0 HET FN3416-S Chr1 26646626 26646632 0 0 Insertion 6 HET FN3416-S Chr1 38179318 A-G 0 0 Single Base Substitution 0 Homo FN3416-S Chr1 40685653 T-A 0 0 Single Base Substitution 0 HET FN3416-S Chr1 5422520 5422521 0 0 Deletion 1 HET FN3416-S Chr1 5545233 C-T 0 0 Single Base Substitution 0 Homo FN3416-S Chr10 15722250 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g30260 transposon protein, putative, unclassified, expressed FN3416-S Chr10 19122106 A-G 0 0 Single Base Substitution 0 Homo FN3416-S Chr10 525401 T-C 0 0 Single Base Substitution 0 HET FN3416-S Chr10 6869119 6869129 0 0 Deletion 10 Homo FN3416-S Chr10 7058768 G-A 0 0 Single Base Substitution 0 HET FN3416-S Chr10 8812832 A-T 0 0 Single Base Substitution 0 HET FN3416-S Chr10 930704 C-T 0 0 Single Base Substitution 0 HET FN3416-S Chr11 10930227 10930228 0 0 Deletion 1 HET FN3416-S Chr11 16626412 G-A 0 0 Single Base Substitution 0 HET FN3416-S Chr11 27705716 Chr5 23588254 0 Translocation 0 LOC_Os05g40160 NB-ARC domain containing protein, expressed FN3416-S Chr11 27705716 Chr5 23588254 0 Translocation 0 LOC_Os11g45790 NB-ARC domain containing protein, expressed FN3416-S Chr11 8257492 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g14650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3416-S Chr12 10501476 T-C 0 0 Single Base Substitution 0 HET FN3416-S Chr12 11953115 C-G 0 0 Single Base Substitution 0 HET FN3416-S Chr12 15823115 A-T 0 0 Single Base Substitution 0 HET FN3416-S Chr12 21737790 21737792 0 0 Deletion 2 HET FN3416-S Chr12 25930940 C-T 0 0 Single Base Substitution 0 HET FN3416-S Chr12 27095182 Chr4 9895774 0 Translocation 0 LOC_Os04g18010 cleavage and polyadenylation specificity factor subunit 1, putative, expressed FN3416-S Chr12 27095182 Chr4 9895774 0 Translocation 0 LOC_Os12g43630 lactate/malate dehydrogenase, putative, expressed FN3416-S Chr12 4267973 G-A 0 0 Single Base Substitution 0 HET FN3416-S Chr12 447609 447613 0 0 Deletion 4 HET FN3416-S Chr2 16068480 G-A 0 0 Single Base Substitution 0 HET FN3416-S Chr2 21138172 G-A 0 0 Single Base Substitution 0 Homo FN3416-S Chr2 21342841 21342848 0 0 Deletion 7 Homo FN3416-S Chr2 2274789 2274794 0 0 Deletion 5 frameshift_variant HET LOC_Os02g04915 expressed protein FN3416-S Chr2 26871682 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g44380 WD domain containing protein, putative, expressed FN3416-S Chr2 33395882 C-T 0 0 Single Base Substitution 0 HET FN3416-S Chr2 34493683 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g56354 transposon protein, putative, unclassified, expressed FN3416-S Chr2 5450831 C-T 0 0 Single Base Substitution 0 HET FN3416-S Chr2 9476487 C-T 0 0 Single Base Substitution 0 HET FN3416-S Chr3 11409106 C-T 0 0 Single Base Substitution 0 HET FN3416-S Chr3 26117638 C-G 0 0 Single Base Substitution 0 HET FN3416-S Chr3 35622536 35622539 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os03g63000 transposon protein, putative, unclassified FN3416-S Chr3 7875971 C-T 0 0 Single Base Substitution 0 HET FN3416-S Chr4 10792584 C-T 0 0 Single Base Substitution 0 Homo FN3416-S Chr4 12875174 A-C 0 0 Single Base Substitution 0 HET FN3416-S Chr4 16518883 A-T 0 0 Single Base Substitution 0 HET FN3416-S Chr4 16810597 C-A 0 0 Single Base Substitution 0 HET FN3416-S Chr4 16971001 17005000 0 0 Deletion 33999 LOC_Os04g28650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3416-S Chr4 16971001 17005000 0 0 Deletion 33999 LOC_Os04g28660 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3416-S Chr4 16971001 17005000 0 0 Deletion 33999 LOC_Os04g28670 expressed protein FN3416-S Chr4 16971001 17005000 0 0 Deletion 33999 LOC_Os04g28680 male sterility protein, putative, expressed FN3416-S Chr4 16971001 17005000 0 0 Deletion 33999 LOC_Os04g28690 fatty acyl coA reductase, putative, expressed FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28700 retrotransposon protein, putative, unclassified FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28710 hypothetical protein FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28720 RALFL32 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28730 retrotransposon, putative, centromere-specific FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28740 retrotransposon protein, putative, unclassified FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28750 retrotransposon protein, putative, unclassified, expressed FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28760 expressed protein FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28780 serine/threonine-protein kinase receptor precursor, putative, expressed FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28790 hypothetical protein FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28800 retrotransposon protein, putative, unclassified FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28805 expressed protein FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28810 expressed protein FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28820 retrotransposon protein, putative, unclassified, expressed FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28830 RALFL34 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28840 RALFL35 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28850 RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28860 expressed protein FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28870 dehydrogenase, putative, expressed FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28890 retrotransposon protein, putative, unclassified FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28900 retrotransposon protein, putative, unclassified, expressed FN3416-S Chr4 17009001 17142000 0 0 Deletion 132999 LOC_Os04g28910 retrotransposon protein, putative, unclassified, expressed FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g28920 retrotransposon protein, putative, unclassified, expressed FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g28930 retrotransposon protein, putative, unclassified, expressed FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g28940 retrotransposon protein, putative, unclassified, expressed FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g28970 expressed protein FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g28980 expressed protein FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g28990 dehydrogenase, putative, expressed FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29000 sulfotransferase domain containing protein, expressed FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29010 expressed protein FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29020 expressed protein FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29030 dehydrogenase, putative, expressed FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29040 expressed protein FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29050 expressed protein FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29060 hypothetical protein FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29080 hypothetical protein FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29090 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29100 hypothetical protein FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29110 hypothetical protein FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29120 retrotransposon protein, putative, unclassified, expressed FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29130 retrotransposon protein, putative, unclassified FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29140 retrotransposon protein, putative, unclassified FN3416-S Chr4 17144001 17288000 0 0 Deletion 143999 LOC_Os04g29150 retrotransposon protein, putative, unclassified FN3416-S Chr4 20147026 C-T 0 0 Single Base Substitution 0 HET FN3416-S Chr4 24365976 24365977 0 0 Deletion 1 HET FN3416-S Chr4 7960864 7960865 0 0 Deletion 1 HET FN3416-S Chr4 8440603 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g15520 retrotransposon protein, putative, unclassified FN3416-S Chr4 8678210 C-T 0 0 Single Base Substitution 0 HET FN3416-S Chr5 1695715 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g03810 trehalose phosphatase, putative, expressed FN3416-S Chr5 17795605 T-A 0 0 Single Base Substitution 0 Homo FN3416-S Chr5 17795608 C-T 0 0 Single Base Substitution 0 Homo FN3416-S Chr5 17795610 C-T 0 0 Single Base Substitution 0 Homo FN3416-S Chr5 2567681 2567683 0 0 Insertion 2 HET FN3416-S Chr5 5914700 Chr1 40999728 0 Translocation 0 LOC_Os05g10730 ABC transporter, ATP-binding protein, putative, expressed FN3416-S Chr5 5914706 Chr1 40999729 0 Translocation 0 LOC_Os05g10730 ABC transporter, ATP-binding protein, putative, expressed FN3416-S Chr5 6750990 6750992 0 0 Deletion 2 HET FN3416-S Chr6 11354830 C-A 0 0 Single Base Substitution 0 HET FN3416-S Chr6 11367176 G-C 0 0 Single Base Substitution 0 Homo FN3416-S Chr6 13864652 G-A 0 0 Single Base Substitution 0 HET FN3416-S Chr6 22217563 T-G 0 0 Single Base Substitution 0 HET FN3416-S Chr6 25119825 G-A 0 0 Single Base Substitution 0 HET FN3416-S Chr6 8264326 G-A 0 0 Single Base Substitution 0 HET FN3416-S Chr7 13579336 13579337 0 0 Insertion 1 HET FN3416-S Chr7 14026266 C-T 0 0 Single Base Substitution 0 HET FN3416-S Chr7 25587002 25587004 0 0 Deletion 2 HET FN3416-S Chr7 5172590 5172591 0 0 Insertion 1 HET FN3416-S Chr8 16677787 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g27310 retrotransposon protein, putative, Ty3-gypsy subclass FN3416-S Chr8 27944912 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g44420 kinesin-related protein, putative, expressed FN3416-S Chr9 17718529 17718537 0 0 Deletion 8 Homo FN3416-S Chr9 4321076 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g08350 retrotransposon protein, putative, unclassified, expressed