FN3440-S Chr1 21800739 21800758 0 0 Deletion 19 HET FN3440-S Chr1 21928522 21928528 0 0 Deletion 6 HET FN3440-S Chr1 23677017 G-T 0 0 Single Base Substitution 0 HET FN3440-S Chr1 25732310 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g45330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3440-S Chr1 35948615 T-A 0 0 Single Base Substitution 0 HET FN3440-S Chr10 10449345 10449347 0 0 Insertion 2 Homo FN3440-S Chr10 17817440 G-C 0 0 Single Base Substitution 0 HET FN3440-S Chr10 19750295 C-A 0 0 Single Base Substitution 0 HET FN3440-S Chr10 19750296 C-G 0 0 Single Base Substitution 0 HET FN3440-S Chr10 22153748 22153750 0 0 Deletion 2 frameshift_variant Homo LOC_Os10g41230 homeobox associated leucine zipper, putative, expressed FN3440-S Chr10 23114769 23114772 0 0 Insertion 3 start_lost&disruptive_inframe_insertion HET LOC_Os10g42870 peptide transporter PTR2, putative, expressed FN3440-S Chr10 9009645 G-T 0 0 Single Base Substitution 0 HET FN3440-S Chr11 17234357 17234358 0 0 Deletion 1 HET FN3440-S Chr11 19748564 Chr6 5893165 0 Translocation 0 FN3440-S Chr11 19748564 Chr6 5893165 0 Translocation 0 LOC_Os06g11230 expressed protein FN3440-S Chr11 22359590 G-A 0 0 Single Base Substitution 0 HET FN3440-S Chr11 23030924 C-T 0 0 Single Base Substitution 0 HET FN3440-S Chr11 3157220 T-A 0 0 Single Base Substitution 0 Homo FN3440-S Chr11 5621882 5621887 0 0 Deletion 5 HET FN3440-S Chr11 638208 G-A 0 0 Single Base Substitution 0 Homo FN3440-S Chr12 1542987 1551591 0 0 Inversion 0 LOC_Os12g03790 rhamnogalacturonate lyase, putative, expressed FN3440-S Chr12 1542996 Chr4 516800 0 Translocation 0 LOC_Os12g03790 rhamnogalacturonate lyase, putative, expressed FN3440-S Chr12 22564309 22564310 0 0 Insertion 1 HET FN3440-S Chr12 22963573 G-T 0 0 Single Base Substitution 0 HET FN3440-S Chr12 687680 687714 0 0 Deletion 34 Homo FN3440-S Chr12 687737 G-A 0 0 Single Base Substitution 0 Homo FN3440-S Chr2 1274534 A-T 0 0 Single Base Substitution 0 HET FN3440-S Chr2 26848277 C-T 0 0 Single Base Substitution 0 HET FN3440-S Chr2 30585147 30585149 0 0 Deletion 2 HET FN3440-S Chr2 33454857 33454858 0 0 Insertion 1 HET FN3440-S Chr3 12476343 A-G 0 0 Single Base Substitution 0 HET FN3440-S Chr3 13549787 T-A 0 0 Single Base Substitution 0 Homo FN3440-S Chr3 13549788 G-A 0 0 Single Base Substitution 0 Homo FN3440-S Chr3 13843416 13843417 0 0 Deletion 1 frameshift_variant Homo LOC_Os03g24339 PWWP domain containing protein, expressed FN3440-S Chr3 17688293 A-G 0 0 Single Base Substitution 0 HET FN3440-S Chr3 32766071 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g57470 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr3 33293936 33293937 0 0 Deletion 1 HET FN3440-S Chr3 5096470 Chr1 27526753 0 Translocation 0 FN3440-S Chr3 5424612 T-C 0 0 Single Base Substitution 0 HET FN3440-S Chr4 10804501 C-A 0 0 Single Base Substitution 0 Homo FN3440-S Chr4 12301006 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g21740 expressed protein FN3440-S Chr4 18329693 T-G 0 0 Single Base Substitution 0 Homo FN3440-S Chr4 20382711 G-A 0 0 Single Base Substitution 0 HET FN3440-S Chr4 23082871 23082872 0 0 Deletion 1 HET FN3440-S Chr4 24686294 T-C 0 0 Single Base Substitution 0 HET FN3440-S Chr4 3092669 3092675 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os04g05970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3440-S Chr4 3629176 G-T 0 0 Single Base Substitution 0 HET FN3440-S Chr4 8032979 C-G 0 0 Single Base Substitution 0 HET FN3440-S Chr5 11860525 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os05g20250 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr5 11897357 G-T 0 0 Single Base Substitution 0 HET FN3440-S Chr5 15003882 T-C 0 0 Single Base Substitution 0 HET FN3440-S Chr5 16675391 16675398 0 0 Deletion 7 HET FN3440-S Chr6 14790062 C-T 0 0 Single Base Substitution 0 HET FN3440-S Chr6 15238670 15238690 0 0 Deletion 20 frameshift_variant HET LOC_Os06g26030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3440-S Chr6 15447616 15447618 0 0 Insertion 2 HET FN3440-S Chr6 16686816 G-T 0 0 Single Base Substitution 0 HET FN3440-S Chr6 17329547 17329548 0 0 Deletion 1 frameshift_variant HET LOC_Os06g30070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3440-S Chr6 2493298 2493301 0 0 Deletion 3 HET FN3440-S Chr6 31041864 T-A 0 0 Single Base Substitution 0 Homo FN3440-S Chr6 4484209 A-G 0 0 Single Base Substitution 0 HET FN3440-S Chr6 6493824 6493826 0 0 Deletion 2 HET FN3440-S Chr7 10238688 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g17340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3440-S Chr7 11859814 Chr6 2921274 0 Translocation 0 LOC_Os07g20530 hypothetical protein FN3440-S Chr7 11895233 C-T 0 0 Single Base Substitution 0 HET FN3440-S Chr7 21785156 21785157 0 0 Deletion 1 HET FN3440-S Chr7 4088001 4125000 0 0 Deletion 36999 LOC_Os07g08060 transmembrane BAX inhibitor motif-containing protein, putative, expressed FN3440-S Chr7 4088001 4125000 0 0 Deletion 36999 LOC_Os07g08070 transmembrane BAX inhibitor motif-containing protein, putative, expressed FN3440-S Chr7 4088001 4125000 0 0 Deletion 36999 LOC_Os07g08080 expressed protein FN3440-S Chr7 4088001 4125000 0 0 Deletion 36999 LOC_Os07g08090 U-box protein, putative, expressed FN3440-S Chr7 4088001 4125000 0 0 Deletion 36999 LOC_Os07g08120 BTBT2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed FN3440-S Chr7 6549996 6985730 0 0 Inversion 0 FN3440-S Chr8 14534925 14548971 0 0 Inversion 0 FN3440-S Chr8 18815503 C-T 0 0 Single Base Substitution 0 HET FN3440-S Chr8 3163209 C-T 0 0 Single Base Substitution 0 HET FN3440-S Chr8 4525136 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g08000 DNA binding protein, putative, expressed FN3440-S Chr9 12912526 12912527 0 0 Deletion 1 Homo FN3440-S Chr9 16887955 16887956 0 0 Deletion 1 HET FN3440-S Chr9 20842347 G-A 0 0 Single Base Substitution 0 Homo FN3440-S Chr9 7990001 8019000 0 0 Deletion 28999 LOC_Os09g13670 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3440-S Chr9 7990001 8019000 0 0 Deletion 28999 LOC_Os09g13680 ZOS9-04 - C2H2 zinc finger protein, expressed FN3440-S Chr9 7990001 8019000 0 0 Deletion 28999 LOC_Os09g13690 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 7990001 8019000 0 0 Deletion 28999 LOC_Os09g13700 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8028001 8055000 0 0 Deletion 26999 LOC_Os09g13720 expressed protein FN3440-S Chr9 8028001 8055000 0 0 Deletion 26999 LOC_Os09g13740 SET domain containing protein, expressed FN3440-S Chr9 8028001 8055000 0 0 Deletion 26999 LOC_Os09g13750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13760 retrotransposon protein, putative, unclassified FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13770 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13780 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13790 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13800 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13810 expressed protein FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13820 pollen signalling protein with adenylyl cyclase activity, putative, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13830 expressed protein FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13850 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13860 retrotransposon protein, putative, unclassified FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13870 lipid phosphatase protein, putative, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13880 SWIM zinc finger family protein, putative, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13890 calmodulin binding protein, putative, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13920 expressed protein FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13930 LTPL4 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13940 AP2 domain containing protein, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13970 retrotransposon protein, putative, Ty3-gypsy subclass FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g13990 retrotransposon protein, putative, unclassified FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g14000 retrotransposon protein, putative, unclassified FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g14010 disease resistance protein RPS2, putative, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g14019 expressed protein FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g14040 transposon protein, putative, unclassified, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g14050 expressed protein FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g14060 disease resistance protein RPS2, putative, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g14070 retrotransposon protein, putative, Ty1-copia subclass FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g14080 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g14090 retrotransposon protein, putative, unclassified FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g14100 disease resistance protein RPS2, putative, expressed FN3440-S Chr9 8064001 8358000 0 0 Deletion 293999 LOC_Os09g14110 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14510 peroxin-3 family protein, putative, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14520 integral membrane protein, putative, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14530 hAT dimerisation domain-containing protein, putative FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14540 protein phosphatase 2C, putative, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14550 RNA recognition motif containing protein, putative, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14560 expressed protein FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14570 tropinone reductase, putative, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14580 protein kinase domain containing protein, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14590 proteasome maturation factor UMP1 family protein, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14600 peroxisomal membrane protein-related, putative, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14610 DCL2, putative, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14614 serine/arginine repetitive matrix protein 1, putative, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14620 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14630 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14640 expressed protein FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14650 transposon protein, putative, Pong sub-class, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14660 legume lectins beta domain containing protein, putative, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14670 phosphoenolpyruvate carboxylase, putative, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14680 expressed protein FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14690 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14700 2-aminoethanethiol dioxygenase, putative, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14710 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14720 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3440-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14740 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8774001 8797000 0 0 Deletion 22999 LOC_Os09g14760 expressed protein FN3440-S Chr9 8774001 8797000 0 0 Deletion 22999 LOC_Os09g14770 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8774001 8797000 0 0 Deletion 22999 LOC_Os09g14780 retrotransposon, putative, centromere-specific, expressed FN3440-S Chr9 8829001 8837000 0 0 Deletion 7999 FN3440-S Chr9 8843428 Chr7 24331917 0 Translocation 0 LOC_Os07g40610 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8843428 Chr7 24331917 0 Translocation 0 LOC_Os09g14830 transposon protein, putative, unclassified, expressed FN3440-S Chr9 8849001 8926000 0 0 Deletion 76999 LOC_Os09g14850 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8849001 8926000 0 0 Deletion 76999 LOC_Os09g14860 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 8849001 8926000 0 0 Deletion 76999 LOC_Os09g14870 expressed protein FN3440-S Chr9 8849001 8926000 0 0 Deletion 76999 LOC_Os09g14880 transposon protein, putative, Pong sub-class, expressed FN3440-S Chr9 8849001 8926000 0 0 Deletion 76999 LOC_Os09g14890 expressed protein FN3440-S Chr9 8849001 8926000 0 0 Deletion 76999 LOC_Os09g14900 retrotransposon protein, putative, unclassified FN3440-S Chr9 8849001 8926000 0 0 Deletion 76999 LOC_Os09g14910 expressed protein FN3440-S Chr9 8849001 8926000 0 0 Deletion 76999 LOC_Os09g14920 hypothetical protein FN3440-S Chr9 8929001 9018000 0 0 Deletion 88999 LOC_Os09g14930 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3440-S Chr9 8929001 9018000 0 0 Deletion 88999 LOC_Os09g14940 retrotransposon protein, putative, Ty1-copia subclass FN3440-S Chr9 8929001 9018000 0 0 Deletion 88999 LOC_Os09g14950 expressed protein FN3440-S Chr9 8929001 9018000 0 0 Deletion 88999 LOC_Os09g14960 transposon protein, putative, Pong sub-class, expressed FN3440-S Chr9 8929001 9018000 0 0 Deletion 88999 LOC_Os09g14970 hypothetical protein FN3440-S Chr9 8929001 9018000 0 0 Deletion 88999 LOC_Os09g14980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3440-S Chr9 8929001 9018000 0 0 Deletion 88999 LOC_Os09g14990 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3440-S Chr9 9260001 9298000 0 0 Deletion 37999 LOC_Os09g15250 retrotransposon protein, putative, unclassified, expressed FN3440-S Chr9 9260001 9298000 0 0 Deletion 37999 LOC_Os09g15260 hypothetical protein FN3440-S Chr9 9911935 9911941 0 0 Deletion 6 inframe_deletion HET LOC_Os09g16240 expressed protein