FN3442-S Chr1 15748933 15748934 0 0 Insertion 1 HET FN3442-S Chr1 17844293 17844841 0 0 Inversion 0 FN3442-S Chr1 36787775 36787779 0 0 Deletion 4 Homo FN3442-S Chr1 6662662 6662670 0 0 Deletion 8 HET FN3442-S Chr10 21781975 21781976 0 0 Deletion 1 HET FN3442-S Chr10 22890526 Chr6 18908693 0 Translocation 0 FN3442-S Chr10 3923863 3923864 0 0 Insertion 1 HET FN3442-S Chr11 10767415 G-T 0 0 Single Base Substitution 0 Homo FN3442-S Chr11 11933705 C-A 0 0 Single Base Substitution 0 Homo FN3442-S Chr11 14469047 14469049 0 0 Deletion 2 HET FN3442-S Chr11 15174798 T-A 0 0 Single Base Substitution 0 Homo FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41770 expressed protein FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41800 hypothetical protein FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41820 RNA recognition motif containing protein, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41830 proteophosphoglycan ppg4, putative, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41840 transporter family protein, putative, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41850 transporter family protein, putative, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41860 OsFBX429 - F-box domain containing protein, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41870 transporter family protein, putative, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41875 membrane protein, putative, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41880 potyvirus VPg interacting protein, putative, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41890 RNA recognition motif containing protein, putative, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41900 acyltransferase, putative, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41910 GTP-binding protein, putative, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41920 expressed protein FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41940 expressed protein FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41950 expressed protein FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41960 hypothetical protein FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41970 hypothetical protein FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g41990 armadillo/beta-catenin-like repeat family protein, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g42000 FRA10AC1, putative, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g42010 NBS-LRR type disease resistance protein, putative, expressed FN3442-S Chr11 25080001 25272000 0 0 Deletion 191999 LOC_Os11g42020 expressed protein FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42200 laccase precursor protein, putative, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42210 expressed protein FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42220 laccase precursor protein, putative, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42230 OsFBX430 - F-box domain containing protein, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42240 OsFBX431 - F-box domain containing protein, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42270 OsFBX432 - F-box domain containing protein, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42280 OsFBX433 - F-box domain containing protein, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42290 transferase family protein, putative, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42300 OsFBX434 - F-box domain containing protein, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42310 OsFBL58 - F-box domain and LRR containing protein, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42330 retrotransposon protein, putative, Ty3-gypsy subclass FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42340 expressed protein FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42350 glutathione synthetase, chloroplast precursor, putative, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42360 expressed protein FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42370 transferase family protein, putative, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42380 expressed protein FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42390 OsSCP64 - Putative Serine Carboxypeptidase homologue, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42400 expressed protein FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42410 expressed protein FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42420 nuclear pore protein 84/107 containing protein, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42430 transporter family protein, putative, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42440 expressed protein FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42450 leucine-rich repeat family protein, putative, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42470 expressed protein FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42480 transferase family domain containing protein, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42490 retrotransposon protein, putative, unclassified, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42500 dirigent, putative, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42510 tyrosine aminotransferase, putative, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42520 DEFL34 - Defensin and Defensin-like DEFL family, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42525 hypothetical protein FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42530 DEFL25 - Defensin and Defensin-like DEFL family FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42540 oxidoreductase, aldo/keto reductase family protein, putative, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42550 dirigent, putative, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42570 NBS-LRR type disease resistance protein, putative, expressed FN3442-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42580 Leucine Rich Repeat family protein, expressed FN3442-S Chr11 25692687 25692688 0 0 Insertion 1 HET FN3442-S Chr11 28650696 Chr7 17052118 0 Translocation 0 LOC_Os11g47446 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3442-S Chr11 9203891 T-G 0 0 Single Base Substitution 0 STOP_LOST Homo LOC_Os11g16600 hypothetical protein FN3442-S Chr11 9219695 G-A 0 0 Single Base Substitution 0 Homo FN3442-S Chr12 11858958 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g20300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3442-S Chr12 14701561 G-A 0 0 Single Base Substitution 0 HET FN3442-S Chr12 24691399 24691400 0 0 Insertion 1 frameshift_variant&stop_gained HET LOC_Os12g39950 expressed protein FN3442-S Chr2 23315378 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g38570 retrotransposon protein, putative, unclassified, expressed FN3442-S Chr2 32720109 A-T 0 0 Single Base Substitution 0 HET FN3442-S Chr2 35844001 35862000 0 0 Deletion 17999 LOC_Os02g58650 expressed protein FN3442-S Chr2 35844001 35862000 0 0 Deletion 17999 LOC_Os02g58660 ATCHX15, putative, expressed FN3442-S Chr2 35844001 35862000 0 0 Deletion 17999 LOC_Os02g58670 bZIP transcription factor domain containing protein, expressed FN3442-S Chr2 35844001 35862000 0 0 Deletion 17999 LOC_Os02g58680 hypothetical protein FN3442-S Chr2 35844001 35862000 0 0 Deletion 17999 LOC_Os02g58690 retrotransposon protein, putative, unclassified FN3442-S Chr3 10731444 C-A 0 0 Single Base Substitution 0 Homo FN3442-S Chr3 11301997 11302002 0 0 Deletion 5 Homo FN3442-S Chr3 33429685 A-T 0 0 Single Base Substitution 0 HET FN3442-S Chr4 10337162 10337163 0 0 Insertion 1 HET FN3442-S Chr4 18885970 Chr2 21197210 0 Translocation 0 FN3442-S Chr4 23922180 23922213 0 0 Insertion 33 HET FN3442-S Chr4 27421542 C-T 0 0 Single Base Substitution 0 HET FN3442-S Chr4 30844731 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g51960 expressed protein FN3442-S Chr4 34117341 C-A 0 0 Single Base Substitution 0 HET FN3442-S Chr4 34340251 C-T 0 0 Single Base Substitution 0 HET FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g57970 expressed protein FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g57980 hypothetical protein FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58000 B3 DNA binding domain containing protein, expressed FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58010 B3 DNA binding domain containing protein, expressed FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58020 MYB_Al protein, putative, expressed FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58030 expressed protein FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58040 expressed protein FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58050 expressed protein FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58055 expressed protein FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58060 methyltransferase, putative, expressed FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58070 aspartic proteinase nepenthesin precursor, putative, expressed FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58080 polygalacturonase inhibitor 3 precursor, putative, expressed FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58090 harpin-induced protein 1 domain containing protein, expressed FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58100 expressed protein FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58110 pyruvate kinase, putative, expressed FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58120 CRP2 - Cysteine-rich family protein precursor, expressed FN3442-S Chr4 34532001 34616000 0 0 Deletion 83999 LOC_Os04g58130 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed FN3442-S Chr4 34970212 Chr2 22516934 0 Translocation 0 FN3442-S Chr4 5481404 G-A 0 0 Single Base Substitution 0 HET FN3442-S Chr5 27204454 27204456 0 0 Insertion 2 frameshift_variant Homo LOC_Os05g47490 MDR-like ABC transporter, putative, expressed FN3442-S Chr5 27204629 C-T 0 0 Single Base Substitution 0 Homo FN3442-S Chr5 4038957 4038958 0 0 Deletion 1 frameshift_variant HET LOC_Os05g07540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3442-S Chr5 561254 561262 0 0 Deletion 8 HET FN3442-S Chr5 8331897 T-A 0 0 Single Base Substitution 0 HET FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22040 retrotransposon protein, putative, unclassified, expressed FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22050 GCRP2 - Glycine and cysteine rich family protein precursor, putative, expressed FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22060 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22070 mitochondrial glycoprotein, putative, expressed FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22080 diacylglycerol O-acyltransferase, putative, expressed FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22090 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22100 DNA binding protein, putative, expressed FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22110 retrotransposon protein, putative, unclassified, expressed FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22120 hypothetical protein FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22130 retrotransposon protein, putative, unclassified FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22140 thioredoxin reductase 2, putative, expressed FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22150 expressed protein FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22170 expressed protein FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22180 retrotransposon protein, putative, unclassified, expressed FN3442-S Chr6 12766001 12878000 0 0 Deletion 111999 LOC_Os06g22190 retrotransposon protein, putative, unclassified, expressed FN3442-S Chr6 18086008 C-T 0 0 Single Base Substitution 0 Homo FN3442-S Chr6 20546556 G-A 0 0 Single Base Substitution 0 Homo FN3442-S Chr6 20824446 Chr1 10348162 0 Translocation 0 LOC_Os01g18410 expressed protein FN3442-S Chr6 20824446 Chr1 10348162 0 Translocation 0 LOC_Os06g35670 expressed protein FN3442-S Chr6 24039658 G-A 0 0 Single Base Substitution 0 Homo FN3442-S Chr6 28816751 G-T 0 0 Single Base Substitution 0 HET FN3442-S Chr7 15022755 C-T 0 0 Single Base Substitution 0 HET FN3442-S Chr7 15703170 T-C 0 0 Single Base Substitution 0 HET FN3442-S Chr7 19449063 Chr1 12115016 0 Translocation 0 FN3442-S Chr7 25402485 G-T 0 0 Single Base Substitution 0 Homo FN3442-S Chr7 27604320 27604323 0 0 Insertion 3 disruptive_inframe_insertion HET LOC_Os07g46260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3442-S Chr7 4843878 4843879 0 0 Insertion 1 frameshift_variant HET LOC_Os07g09240 retrotransposon protein, putative, unclassified, expressed FN3442-S Chr7 7363918 7363929 0 0 Deletion 11 Homo FN3442-S Chr8 17446884 17446885 0 0 Insertion 1 HET FN3442-S Chr8 17953173 G-A 0 0 Single Base Substitution 0 HET FN3442-S Chr8 22702241 C-T 0 0 Single Base Substitution 0 Homo FN3442-S Chr8 3974981 3975430 0 0 Inversion 0 LOC_Os08g07100 terpene synthase, putative, expressed FN3442-S Chr8 7583929 C-A 0 0 Single Base Substitution 0 HET FN3442-S Chr8 8916725 Chr5 5528752 0 Translocation 0 FN3442-S Chr9 1021295 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g02460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3442-S Chr9 11547133 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g19290 retrotransposon protein, putative, unclassified, expressed FN3442-S Chr9 22255449 C-A 0 0 Single Base Substitution 0 HET