FN3446-S Chr1 15347516 15347517 0 0 Deletion 1 frameshift_variant Homo LOC_Os01g27490 leucoanthocyanidin dioxygenase, putative, expressed FN3446-S Chr1 17750499 17750511 0 0 Deletion 12 HET FN3446-S Chr1 17769833 T-C 0 0 Single Base Substitution 0 Homo FN3446-S Chr1 1780476 G-T 0 0 Single Base Substitution 0 HET FN3446-S Chr1 1918329 1918330 0 0 Insertion 1 HET FN3446-S Chr1 22009462 T-A 0 0 Single Base Substitution 0 HET FN3446-S Chr1 23145025 23145026 0 0 Insertion 1 HET FN3446-S Chr1 24240920 C-T 0 0 Single Base Substitution 0 HET FN3446-S Chr1 25752255 G-C 0 0 Single Base Substitution 0 HET FN3446-S Chr1 26353692 26353696 0 0 Deletion 4 HET FN3446-S Chr1 26966659 C-T 0 0 Single Base Substitution 0 HET FN3446-S Chr1 32183407 C-G 0 0 Single Base Substitution 0 Homo FN3446-S Chr1 32193189 T-C 0 0 Single Base Substitution 0 Homo FN3446-S Chr1 41336107 41336110 0 0 Deletion 3 HET FN3446-S Chr1 5146866 T-C 0 0 Single Base Substitution 0 HET FN3446-S Chr10 10270050 C-T 0 0 Single Base Substitution 0 HET FN3446-S Chr10 18580314 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g34795 expressed protein FN3446-S Chr10 20981312 G-A 0 0 Single Base Substitution 0 HET FN3446-S Chr10 21783317 21783318 0 0 Insertion 1 HET FN3446-S Chr10 4243358 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g07966 expressed protein FN3446-S Chr11 10000303 C-T 0 0 Single Base Substitution 0 HET FN3446-S Chr11 10000304 C-T 0 0 Single Base Substitution 0 HET FN3446-S Chr11 13707756 Chr3 16725985 0 Translocation 0 LOC_Os11g24120 expressed protein FN3446-S Chr11 14077487 G-A 0 0 Single Base Substitution 0 HET FN3446-S Chr11 19320393 T-A 0 0 Single Base Substitution 0 HET FN3446-S Chr11 3516423 C-T 0 0 Single Base Substitution 0 HET FN3446-S Chr11 5743805 Chr10 12207893 0 Translocation 0 FN3446-S Chr11 7384444 7384447 0 0 Deletion 3 HET FN3446-S Chr11 9946436 9946445 0 0 Deletion 9 disruptive_inframe_deletion HET LOC_Os11g17770 transposon protein, putative, unclassified, expressed FN3446-S Chr12 14294747 G-A 0 0 Single Base Substitution 0 HET FN3446-S Chr12 24566913 G-A 0 0 Single Base Substitution 0 Homo FN3446-S Chr12 26878795 26878799 0 0 Deletion 4 HET FN3446-S Chr12 26879349 C-A 0 0 Single Base Substitution 0 HET FN3446-S Chr2 13926383 A-G 0 0 Single Base Substitution 0 HET FN3446-S Chr2 1962942 2332898 0 0 Inversion 0 LOC_Os02g04440 transducin family protein, putative, expressed FN3446-S Chr2 1962942 2332898 0 0 Inversion 0 LOC_Os02g04970 expressed protein FN3446-S Chr2 1962958 2333100 0 0 Inversion 0 LOC_Os02g04440 transducin family protein, putative, expressed FN3446-S Chr2 1962958 2333100 0 0 Inversion 0 LOC_Os02g04970 expressed protein FN3446-S Chr2 5265976 A-G 0 0 Single Base Substitution 0 HET FN3446-S Chr2 5433651 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g10340 retrotransposon protein, putative, unclassified, expressed FN3446-S Chr2 5589217 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g10630 GRAM and C2 domains containing protein, putative, expressed FN3446-S Chr2 7949350 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g14440 peroxidase precursor, putative, expressed FN3446-S Chr2 8909730 G-A 0 0 Single Base Substitution 0 HET FN3446-S Chr3 18089198 A-T 0 0 Single Base Substitution 0 HET FN3446-S Chr3 21116058 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g38040 expressed protein FN3446-S Chr3 27622888 T-A 0 0 Single Base Substitution 0 HET FN3446-S Chr3 28179318 T-G 0 0 Single Base Substitution 0 Homo FN3446-S Chr3 30259179 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g52780 expressed protein FN3446-S Chr3 30259183 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os03g52780 expressed protein FN3446-S Chr3 34167799 A-C 0 0 Single Base Substitution 0 HET FN3446-S Chr3 6710633 G-A 0 0 Single Base Substitution 0 HET FN3446-S Chr3 8055299 A-G 0 0 Single Base Substitution 0 HET FN3446-S Chr4 10035687 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g18160 retrotransposon protein, putative, Ty3-gypsy subclass FN3446-S Chr4 26439938 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g44670 AP2 domain containing protein, expressed FN3446-S Chr4 29235245 A-G 0 0 Single Base Substitution 0 HET FN3446-S Chr4 30774 T-A 0 0 Single Base Substitution 0 HET FN3446-S Chr5 13149914 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g23070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr5 14675604 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g25280 retrotransposon protein, putative, unclassified, expressed FN3446-S Chr5 23479375 G-A 0 0 Single Base Substitution 0 HET FN3446-S Chr5 29797935 T-C 0 0 Single Base Substitution 0 HET FN3446-S Chr6 19568781 19568788 0 0 Deletion 7 Homo FN3446-S Chr6 19623368 A-C 0 0 Single Base Substitution 0 Homo FN3446-S Chr6 19780099 C-T 0 0 Single Base Substitution 0 HET FN3446-S Chr6 24214167 24214174 0 0 Deletion 7 HET FN3446-S Chr6 28066670 C-T 0 0 Single Base Substitution 0 HET FN3446-S Chr6 28256943 28256952 0 0 Deletion 9 Homo FN3446-S Chr6 29214372 29214373 0 0 Deletion 1 Homo FN3446-S Chr6 8877947 G-A 0 0 Single Base Substitution 0 HET FN3446-S Chr6 8955786 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g15760 eukaryotic aspartyl protease domain containing protein, expressed FN3446-S Chr6 9823921 C-T 0 0 Single Base Substitution 0 HET FN3446-S Chr7 14578735 C-T 0 0 Single Base Substitution 0 HET FN3446-S Chr7 18301570 18301571 0 0 Insertion 1 HET FN3446-S Chr7 22608285 22608288 0 0 Insertion 3 disruptive_inframe_insertion HET LOC_Os07g37710 oligonucleotide/oligosaccharide-binding fold containing 2B, putative, expressed FN3446-S Chr7 23440827 C-T 0 0 Single Base Substitution 0 HET FN3446-S Chr7 23792875 23793257 0 0 Inversion 0 FN3446-S Chr7 7145852 G-T 0 0 Single Base Substitution 0 HET FN3446-S Chr7 8117537 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g14250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 12578883 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g21030 retrotransposon protein, putative, unclassified FN3446-S Chr8 13286436 13286437 0 0 Deletion 1 HET FN3446-S Chr8 19881105 C-T 0 0 Single Base Substitution 0 HET FN3446-S Chr8 21309784 T-C 0 0 Single Base Substitution 0 HET FN3446-S Chr8 5602387 C-T 0 0 Single Base Substitution 0 HET FN3446-S Chr8 6088575 6088638 0 0 Insertion 63 HET FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11550 expressed protein FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11560 retrotransposon protein, putative, Ty3-gypsy subclass FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11599 expressed protein FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11610 retrotransposon protein, putative, unclassified FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11630 retrotransposon protein, putative, Ty3-gypsy subclass FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11640 expressed protein FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11660 transposon protein, putative, CACTA, En/Spm sub-class FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11669 expressed protein FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11680 transposon protein, putative, CACTA, En/Spm sub-class FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11690 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11700 hypothetical protein FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11720 expressed protein FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11730 retrotransposon protein, putative, unclassified FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11740 retrotransposon protein, putative, unclassified FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11760 expressed protein FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11770 transposon protein, putative, unclassified FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11810 retrotransposon protein, putative, unclassified, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11820 transposon protein, putative, unclassified, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11840 retrotransposon protein, putative, unclassified, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11860 retrotransposon protein, putative, unclassified, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11880 retrotransposon protein, putative, unclassified, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11890 retrotransposon protein, putative, unclassified, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g11990 retrotransposon protein, putative, Ty3-gypsy subclass FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g12000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g12010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr8 6766001 7055000 0 0 Deletion 288999 LOC_Os08g12020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3446-S Chr9 11674773 G-A 0 0 Single Base Substitution 0 HET FN3446-S Chr9 12057072 T-C 0 0 Single Base Substitution 0 HET FN3446-S Chr9 21718130 A-G 0 0 Single Base Substitution 0 HET