FN3456-S Chr1 11976161 11976178 0 0 Deletion 17 Homo FN3456-S Chr1 15793169 T-G 0 0 Single Base Substitution 0 Homo FN3456-S Chr1 15864602 15864607 0 0 Deletion 5 Homo FN3456-S Chr1 16884228 16884229 0 0 Insertion 1 HET FN3456-S Chr1 18323242 18323244 0 0 Insertion 2 frameshift_variant HET LOC_Os01g33260 retrotransposon protein, putative, unclassified, expressed FN3456-S Chr1 20331558 20331559 0 0 Deletion 1 frameshift_variant Homo LOC_Os01g36640 disease resistance protein RPM1, putative, expressed FN3456-S Chr1 29542577 G-A 0 0 Single Base Substitution 0 HET FN3456-S Chr1 7323460 G-A 0 0 Single Base Substitution 0 Homo FN3456-S Chr10 12025660 Chr9 9357191 0 Translocation 0 FN3456-S Chr10 16821028 Chr1 41587176 0 Translocation 0 FN3456-S Chr10 18789317 Chr3 31594877 0 Translocation 0 LOC_Os10g35180 white-brown complex homolog protein 11, putative, expressed FN3456-S Chr10 18789319 Chr3 31594426 0 Translocation 0 LOC_Os10g35180 white-brown complex homolog protein 11, putative, expressed FN3456-S Chr10 18844997 Chr1 13555444 0 Translocation 0 FN3456-S Chr10 18844997 Chr1 13555444 0 Translocation 0 LOC_Os01g24050 expressed protein FN3456-S Chr10 18845080 Chr1 13555075 0 Translocation 0 FN3456-S Chr10 18845080 Chr1 13555075 0 Translocation 0 LOC_Os01g24050 expressed protein FN3456-S Chr10 3120022 Chr1 23590359 0 Translocation 0 FN3456-S Chr10 5301602 Chr9 8226721 0 Translocation 0 LOC_Os10g09800 retrotransposon protein, putative, Ty3-gypsy subclass FN3456-S Chr10 5985524 5985525 0 0 Insertion 1 HET FN3456-S Chr11 15630258 Chr9 3034010 0 Translocation 0 FN3456-S Chr11 18872263 18872269 0 0 Deletion 6 Homo FN3456-S Chr11 24005113 Chr2 8611394 0 Translocation 0 LOC_Os11g40249 expressed protein FN3456-S Chr11 26312930 C-T 0 0 Single Base Substitution 0 HET FN3456-S Chr11 26312934 G-T 0 0 Single Base Substitution 0 HET FN3456-S Chr11 621307 621311 0 0 Deletion 4 frameshift_variant HET LOC_Os11g02210 expressed protein FN3456-S Chr12 10246529 A-T 0 0 Single Base Substitution 0 HET FN3456-S Chr12 13724499 13724502 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os12g24120 retrotransposon protein, putative, unclassified FN3456-S Chr12 1424365 1424756 0 0 Deletion 391 HET FN3456-S Chr12 21609233 Chr5 7138587 0 Translocation 0 LOC_Os12g35540 expressed protein FN3456-S Chr2 10050083 G-C 0 0 Single Base Substitution 0 Homo FN3456-S Chr2 14784745 C-G 0 0 Single Base Substitution 0 Homo FN3456-S Chr2 22191428 22191432 0 0 Deletion 4 HET FN3456-S Chr2 23924001 23937000 0 0 Deletion 12999 FN3456-S Chr2 26174125 G-A 0 0 Single Base Substitution 0 Homo FN3456-S Chr2 3261467 3261517 0 0 Insertion 50 HET FN3456-S Chr2 34491774 34491797 0 0 Insertion 23 HET FN3456-S Chr2 4375826 C-T 0 0 Single Base Substitution 0 HET FN3456-S Chr2 8545367 8545368 0 0 Deletion 1 HET FN3456-S Chr2 9395950 9395951 0 0 Insertion 1 HET FN3456-S Chr3 1590001 1598000 0 0 Deletion 7999 LOC_Os03g03610 1,3-beta-glucan synthase component domain containing protein, expressed FN3456-S Chr3 28501288 G-A 0 0 Single Base Substitution 0 HET FN3456-S Chr3 31080001 31113000 0 0 Deletion 32999 LOC_Os03g54210 hypothetical protein FN3456-S Chr3 31080001 31113000 0 0 Deletion 32999 LOC_Os03g54220 expressed protein FN3456-S Chr3 31080001 31113000 0 0 Deletion 32999 LOC_Os03g54230 imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed FN3456-S Chr3 31080001 31113000 0 0 Deletion 32999 LOC_Os03g54240 expressed protein FN3456-S Chr3 32893619 G-C 0 0 Single Base Substitution 0 Homo FN3456-S Chr4 14547660 G-A 0 0 Single Base Substitution 0 HET FN3456-S Chr4 16310321 A-G 0 0 Single Base Substitution 0 HET FN3456-S Chr4 16328001 16357000 0 0 Deletion 28999 LOC_Os04g27610 retrotransposon protein, putative, unclassified, expressed FN3456-S Chr4 16328001 16357000 0 0 Deletion 28999 LOC_Os04g27620 expressed protein FN3456-S Chr4 16328001 16357000 0 0 Deletion 28999 LOC_Os04g27630 retrotransposon protein, putative, unclassified, expressed FN3456-S Chr4 16328001 16357000 0 0 Deletion 28999 LOC_Os04g27640 retrotransposon protein, putative, unclassified, expressed FN3456-S Chr4 16328001 16357000 0 0 Deletion 28999 LOC_Os04g27650 retrotransposon protein, putative, unclassified, expressed FN3456-S Chr4 16328001 16357000 0 0 Deletion 28999 LOC_Os04g27660 retrotransposon protein, putative, unclassified, expressed FN3456-S Chr4 16328001 16357000 0 0 Deletion 28999 LOC_Os04g27670 terpene synthase family, metal binding domain containing protein, expressed FN3456-S Chr4 16378001 16419000 0 0 Deletion 40999 LOC_Os04g27710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3456-S Chr4 16378001 16419000 0 0 Deletion 40999 LOC_Os04g27720 terpene synthase, putative, expressed FN3456-S Chr4 16378001 16419000 0 0 Deletion 40999 LOC_Os04g27730 retrotransposon protein, putative, unclassified, expressed FN3456-S Chr4 16378001 16419000 0 0 Deletion 40999 LOC_Os04g27740 expressed protein FN3456-S Chr4 16378001 16419000 0 0 Deletion 40999 LOC_Os04g27750 expressed protein FN3456-S Chr4 16378001 16419000 0 0 Deletion 40999 LOC_Os04g27760 terpene synthase, putative, expressed FN3456-S Chr4 19175599 Chr3 32506973 0 Translocation 0 FN3456-S Chr4 19175612 Chr3 32507213 0 Translocation 0 FN3456-S Chr4 2611948 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g05240 retrotransposon protein, putative, unclassified FN3456-S Chr4 27682250 Chr1 13555468 0 Translocation 0 LOC_Os01g24050 expressed protein FN3456-S Chr4 27682250 Chr1 13555468 0 Translocation 0 LOC_Os04g46690 transposon protein, putative, unclassified, expressed FN3456-S Chr4 29166109 C-T 0 0 Single Base Substitution 0 Homo FN3456-S Chr4 32065675 Chr3 35082623 0 Translocation 0 LOC_Os04g53810 leucoanthocyanidin reductase, putative, expressed FN3456-S Chr4 8546403 C-T 0 0 Single Base Substitution 0 HET FN3456-S Chr5 11146288 11146289 0 0 Insertion 1 HET FN3456-S Chr5 11472987 C-G 0 0 Single Base Substitution 0 HET FN3456-S Chr5 18200154 C-A 0 0 Single Base Substitution 0 HET FN3456-S Chr5 26651070 26651073 0 0 Insertion 3 HET FN3456-S Chr5 29421915 29421916 0 0 Deletion 1 frameshift_variant HET LOC_Os05g51290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3456-S Chr5 3579783 C-T 0 0 Single Base Substitution 0 Homo FN3456-S Chr5 7471296 C-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os05g13460 retrotransposon protein, putative, unclassified, expressed FN3456-S Chr5 8422096 Chr4 2724173 0 Translocation 0 FN3456-S Chr6 22853265 Chr1 33907213 0 Translocation 0 FN3456-S Chr6 22853265 Chr1 33907213 0 Translocation 0 LOC_Os01g58650 LTPL35 - Protease inhibitor/seed storage/LTP family protein precursor, putative FN3456-S Chr6 26614641 G-C 0 0 Single Base Substitution 0 HET FN3456-S Chr7 10504279 Chr1 19823200 0 Translocation 0 FN3456-S Chr7 19313763 19577275 0 0 Inversion 0 LOC_Os07g32460 src homology-3 domain protein 3, putative, expressed FN3456-S Chr7 19313771 19577275 0 0 Inversion 0 LOC_Os07g32460 src homology-3 domain protein 3, putative, expressed FN3456-S Chr8 13399838 Chr7 7949096 0 Translocation 0 LOC_Os08g22210 retrotransposon protein, putative, unclassified FN3456-S Chr8 21684690 Chr2 16774811 0 Translocation 0 FN3456-S Chr8 27625588 27625590 0 0 Deletion 2 HET FN3456-S Chr8 28038380 C-T 0 0 Single Base Substitution 0 HET FN3456-S Chr8 3720050 G-C 0 0 Single Base Substitution 0 Homo FN3456-S Chr8 3720052 T-A 0 0 Single Base Substitution 0 Homo FN3456-S Chr8 3720053 G-T 0 0 Single Base Substitution 0 Homo FN3456-S Chr8 879991 880005 0 0 Deletion 14 Homo FN3456-S Chr8 9555449 Chr2 8032157 0 Translocation 0 LOC_Os08g15770 expressed protein FN3456-S Chr9 1711614 Chr3 32496898 0 Translocation 0 LOC_Os09g03470 retrotransposon protein, putative, unclassified, expressed FN3456-S Chr9 1711847 Chr3 9562918 0 Translocation 0 FN3456-S Chr9 1711847 Chr3 9562918 0 Translocation 0 LOC_Os03g17180 ABC transporter, ATP-binding protein, putative, expressed FN3456-S Chr9 21410208 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g37120 pyridoxal-dependent decarboxylase protein, putative, expressed FN3456-S Chr9 2171228 Chr2 10775862 0 Translocation 0 FN3456-S Chr9 22493234 22493313 0 0 Deletion 79 HET FN3456-S Chr9 22498583 22498588 0 0 Deletion 5 Homo FN3456-S Chr9 4337283 4337295 0 0 Deletion 12 HET