FN3460-S Chr1 16256193 16256194 0 0 Insertion 1 HET FN3460-S Chr1 16272714 16272715 0 0 Insertion 1 HET FN3460-S Chr1 25217160 T-C 0 0 Single Base Substitution 0 HET FN3460-S Chr1 26022612 26022615 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os01g45810 transposon protein, putative, unclassified, expressed FN3460-S Chr1 29699213 T-C 0 0 Single Base Substitution 0 HET FN3460-S Chr1 30420624 A-G 0 0 Single Base Substitution 0 HET FN3460-S Chr1 38346787 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g66080 retrotransposon protein, putative, unclassified, expressed FN3460-S Chr1 3961991 3961994 0 0 Insertion 3 HET FN3460-S Chr1 40165816 A-T 0 0 Single Base Substitution 0 HET FN3460-S Chr10 18381304 18815296 0 0 Inversion 0 FN3460-S Chr10 18381304 18815296 0 0 Inversion 0 LOC_Os10g35220 KH domain containing protein, putative, expressed FN3460-S Chr10 18381309 18815311 0 0 Inversion 0 FN3460-S Chr10 18381309 18815311 0 0 Inversion 0 LOC_Os10g35220 KH domain containing protein, putative, expressed FN3460-S Chr10 7680633 G-A 0 0 Single Base Substitution 0 Homo FN3460-S Chr11 11833504 C-G 0 0 Single Base Substitution 0 HET FN3460-S Chr11 27438284 Chr7 25323789 0 Translocation 0 FN3460-S Chr11 3688821 G-A 0 0 Single Base Substitution 0 HET FN3460-S Chr12 10087162 Chr8 21909928 0 Translocation 0 FN3460-S Chr12 17677841 17677842 0 0 Deletion 1 frameshift_variant HET LOC_Os12g29640 transposon protein, putative, CACTA, En/Spm sub-class FN3460-S Chr12 18698802 Chr5 6216308 0 Translocation 0 FN3460-S Chr12 21411278 21411279 0 0 Deletion 1 frameshift_variant&splice_region_variant HET LOC_Os12g35220 transposon protein, putative, Ac/Ds sub-class, expressed FN3460-S Chr12 22258313 C-T 0 0 Single Base Substitution 0 HET FN3460-S Chr12 9082995 G-T 0 0 Single Base Substitution 0 HET FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21060 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21070 PPR repeat domain containing protein, putative, expressed FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21080 AGAP008475-PA, putative, expressed FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21090 CPuORF33 - conserved peptide uORF-containing transcript, expressed FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21110 OsFBK6 - F-box domain and kelch repeat containing protein, expressed FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21120 transposon protein, putative, unclassified FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21130 retrotransposon protein, putative, unclassified, expressed FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21140 retrotransposon protein, putative, unclassified, expressed FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21150 retrotransposon protein, putative, unclassified, expressed FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21160 hypothetical protein FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21180 retrotransposon protein, putative, unclassified FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21185 expressed protein FN3460-S Chr2 12475001 12578000 0 0 Deletion 102999 LOC_Os02g21190 expressed protein FN3460-S Chr2 14896674 A-G 0 0 Single Base Substitution 0 HET FN3460-S Chr2 17787770 G-A 0 0 Single Base Substitution 0 HET FN3460-S Chr2 3050950 3295705 0 0 Inversion 0 LOC_Os02g06120 Leucine Rich Repeat family protein, expressed FN3460-S Chr2 3050956 3295727 0 0 Inversion 0 LOC_Os02g06120 Leucine Rich Repeat family protein, expressed FN3460-S Chr2 4285531 C-T 0 0 Single Base Substitution 0 HET FN3460-S Chr3 15893650 15893651 0 0 Deletion 1 frameshift_variant HET LOC_Os03g27730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3460-S Chr3 29243553 C-T 0 0 Single Base Substitution 0 HET FN3460-S Chr3 30508149 C-T 0 0 Single Base Substitution 0 HET FN3460-S Chr3 35987676 C-G 0 0 Single Base Substitution 0 HET FN3460-S Chr3 8618704 8618705 0 0 Deletion 1 frameshift_variant HET LOC_Os03g15620 retrotransposon protein, putative, unclassified, expressed FN3460-S Chr4 10133194 10133195 0 0 Deletion 1 Homo FN3460-S Chr4 12909940 12910460 0 0 Deletion 520 HET FN3460-S Chr4 13545714 C-T 0 0 Single Base Substitution 0 HET FN3460-S Chr4 15119435 15291748 0 0 Inversion 0 FN3460-S Chr4 15927341 C-T 0 0 Single Base Substitution 0 Homo FN3460-S Chr4 17427874 T-C 0 0 Single Base Substitution 0 Homo FN3460-S Chr4 26632064 T-A 0 0 Single Base Substitution 0 HET FN3460-S Chr4 29361302 C-A 0 0 Single Base Substitution 0 Homo FN3460-S Chr5 14575787 Chr2 8032374 0 Translocation 0 FN3460-S Chr5 26449405 G-T 0 0 Single Base Substitution 0 HET FN3460-S Chr5 7917874 Chr3 8412207 0 Translocation 0 FN3460-S Chr5 7917874 Chr3 8412207 0 Translocation 0 LOC_Os03g15370 ubiquitin fusion protein, putative, expressed FN3460-S Chr6 15897461 G-T 0 0 Single Base Substitution 0 Homo FN3460-S Chr6 16205899 G-A 0 0 Single Base Substitution 0 HET FN3460-S Chr6 17523889 17523893 0 0 Insertion 4 frameshift_variant&stop_gained HET LOC_Os06g30340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3460-S Chr6 29109989 G-A 0 0 Single Base Substitution 0 Homo FN3460-S Chr6 7459790 G-A 0 0 Single Base Substitution 0 HET FN3460-S Chr7 15610886 G-C 0 0 Single Base Substitution 0 HET FN3460-S Chr7 16820386 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g28740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3460-S Chr7 22760714 A-G 0 0 Single Base Substitution 0 HET FN3460-S Chr7 25845685 25845692 0 0 Deletion 7 HET FN3460-S Chr8 15492740 A-G 0 0 Single Base Substitution 0 HET FN3460-S Chr8 16304338 Chr1 10794248 0 Translocation 0 FN3460-S Chr8 16899200 16899206 0 0 Insertion 6 HET FN3460-S Chr8 23323367 G-A 0 0 Single Base Substitution 0 Homo FN3460-S Chr9 17957718 Chr3 963103 0 Translocation 0 FN3460-S Chr9 22820617 Chr8 10066194 0 Translocation 0 FN3460-S Chr9 2710751 Chr3 13456890 0 Translocation 0 FN3460-S Chr9 2710751 Chr3 13456890 0 Translocation 0 LOC_Os03g23250 retrotransposon protein, putative, unclassified, expressed FN3460-S Chr9 2891149 Chr5 3288566 0 Translocation 0 LOC_Os09g06160 retrotransposon protein, putative, Ty3-gypsy subclass FN3460-S Chr9 3636624 C-A 0 0 Single Base Substitution 0 HET FN3460-S Chr9 7075763 Chr2 12582948 0 Translocation 0 FN3460-S Chr9 7075763 Chr2 12582948 0 Translocation 0 LOC_Os02g21190 expressed protein FN3460-S Chr9 7079514 Chr2 12584194 0 Translocation 0 FN3460-S Chr9 7079514 Chr2 12584194 0 Translocation 0 LOC_Os02g21190 expressed protein FN3460-S Chr9 7757931 7757933 0 0 Deletion 2 Homo