FN3462-S Chr1 16160801 C-T 0 0 Single Base Substitution 0 Homo FN3462-S Chr1 22567184 22567195 0 0 Deletion 11 frameshift_variant HET LOC_Os01g40010 retrotransposon protein, putative, unclassified, expressed FN3462-S Chr1 38363885 C-A 0 0 Single Base Substitution 0 HET FN3462-S Chr1 8667466 8667476 0 0 Deletion 10 Homo FN3462-S Chr10 13534722 Chr2 33547477 0 Translocation 0 FN3462-S Chr10 13534722 Chr2 33547477 0 Translocation 0 LOC_Os02g54780 CYPRO4, putative, expressed FN3462-S Chr10 13534738 Chr2 33547818 0 Translocation 0 FN3462-S Chr10 13534738 Chr2 33547818 0 Translocation 0 LOC_Os02g54780 CYPRO4, putative, expressed FN3462-S Chr10 4370219 G-C 0 0 Single Base Substitution 0 HET FN3462-S Chr10 4711620 C-T 0 0 Single Base Substitution 0 HET FN3462-S Chr10 5322024 A-T 0 0 Single Base Substitution 0 HET FN3462-S Chr10 5387746 A-G 0 0 Single Base Substitution 0 HET FN3462-S Chr11 14447578 14447579 0 0 Insertion 1 HET FN3462-S Chr11 25634717 25634732 0 0 Insertion 15 inframe_insertion HET LOC_Os11g42590 expressed protein FN3462-S Chr11 5958420 A-G 0 0 Single Base Substitution 0 Homo FN3462-S Chr12 18193598 T-G 0 0 Single Base Substitution 0 Homo FN3462-S Chr12 24659086 T-C 0 0 Single Base Substitution 0 Homo FN3462-S Chr12 24771021 24771025 0 0 Deletion 4 frameshift_variant Homo LOC_Os12g40060 retrotransposon protein, putative, unclassified, expressed FN3462-S Chr12 25049654 C-T 0 0 Single Base Substitution 0 Homo FN3462-S Chr12 27066895 Chr7 4745392 0 Translocation 0 FN3462-S Chr12 8459840 8459842 0 0 Deletion 2 HET FN3462-S Chr2 10623255 10623256 0 0 Deletion 1 frameshift_variant HET LOC_Os02g18310 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3462-S Chr2 12408536 G-A 0 0 Single Base Substitution 0 Homo FN3462-S Chr2 12408537 G-A 0 0 Single Base Substitution 0 Homo FN3462-S Chr2 13520944 C-A 0 0 Single Base Substitution 0 Homo FN3462-S Chr2 23403648 23403655 0 0 Deletion 7 frameshift_variant Homo LOC_Os02g38710 protein phosphatase 2C containing protein, expressed FN3462-S Chr2 24939122 G-T 0 0 Single Base Substitution 0 Homo FN3462-S Chr2 29242337 29242358 0 0 Deletion 21 Homo FN3462-S Chr2 30045575 T-A 0 0 Single Base Substitution 0 Homo FN3462-S Chr2 33152544 33547460 0 0 Inversion 0 LOC_Os02g54110 expressed protein FN3462-S Chr2 33152544 33547460 0 0 Inversion 0 LOC_Os02g54780 CYPRO4, putative, expressed FN3462-S Chr3 12159601 12159604 0 0 Deletion 3 HET FN3462-S Chr3 12634516 C-T 0 0 Single Base Substitution 0 HET FN3462-S Chr3 1636478 1636480 0 0 Deletion 2 HET FN3462-S Chr3 22825013 C-T 0 0 Single Base Substitution 0 Homo FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41790 retrotransposon, putative, centromere-specific, expressed FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41800 transposon protein, putative, unclassified, expressed FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41810 hypothetical protein FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41820 expressed protein FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41830 retrotransposon protein, putative, unclassified, expressed FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41840 retrotransposon protein, putative, unclassified, expressed FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41850 transposon protein, putative, unclassified FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41860 retrotransposon, putative, centromere-specific, expressed FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41870 nucleic acid binding protein, putative FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41879 retrotransposon, putative, centromere-specific FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41910 hypothetical protein FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41920 expressed protein FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41932 expressed protein FN3462-S Chr3 23209001 23302000 0 0 Deletion 92999 LOC_Os03g41940 expressed protein FN3462-S Chr3 24241275 A-G 0 0 Single Base Substitution 0 Homo FN3462-S Chr3 24787286 24787287 0 0 Insertion 1 HET FN3462-S Chr3 34391754 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g60500 expressed protein FN3462-S Chr3 7619538 7619540 0 0 Insertion 2 HET FN3462-S Chr4 10492001 10513000 0 0 Deletion 20999 LOC_Os04g18860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3462-S Chr4 10492001 10513000 0 0 Deletion 20999 LOC_Os04g18870 retrotransposon protein, putative, unclassified FN3462-S Chr4 10492001 10513000 0 0 Deletion 20999 LOC_Os04g18884 retrotransposon protein, putative, Ty3-gypsy subclass FN3462-S Chr4 10492001 10513000 0 0 Deletion 20999 LOC_Os04g18900 retrotransposon protein, putative, unclassified, expressed FN3462-S Chr4 10492753 Chr2 33152557 0 Translocation 0 LOC_Os02g54110 expressed protein FN3462-S Chr4 10492753 Chr2 33152557 0 Translocation 0 LOC_Os04g18860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3462-S Chr4 15433976 G-T 0 0 Single Base Substitution 0 HET FN3462-S Chr4 16253992 Chr1 36877925 0 Translocation 0 FN3462-S Chr4 18593875 Chr2 33131355 0 Translocation 0 LOC_Os02g54090 expressed protein FN3462-S Chr4 18593875 Chr2 33131355 0 Translocation 0 LOC_Os04g31090 expressed protein FN3462-S Chr4 18593884 Chr2 33546683 0 Translocation 0 LOC_Os04g31090 expressed protein FN3462-S Chr4 20396336 G-T 0 0 Single Base Substitution 0 HET FN3462-S Chr4 27808933 27808935 0 0 Deletion 2 HET FN3462-S Chr5 11000146 C-A 0 0 Single Base Substitution 0 HET FN3462-S Chr5 15152415 15152420 0 0 Deletion 5 HET FN3462-S Chr5 16517700 16517704 0 0 Deletion 4 Homo FN3462-S Chr5 3108931 C-G 0 0 Single Base Substitution 0 Homo FN3462-S Chr6 19315397 19315405 0 0 Deletion 8 Homo FN3462-S Chr6 23599204 Chr2 16073111 0 Translocation 0 FN3462-S Chr7 13266424 Chr6 12543361 0 Translocation 0 LOC_Os06g21700 retrotransposon protein, putative, unclassified, expressed FN3462-S Chr7 13266424 Chr6 12543361 0 Translocation 0 LOC_Os07g23480 retrotransposon protein, putative, unclassified, expressed FN3462-S Chr7 21970595 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g36690 CSLF2 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN3462-S Chr7 8449562 C-T 0 0 Single Base Substitution 0 HET FN3462-S Chr8 10279515 Chr1 2400163 0 Translocation 0 FN3462-S Chr8 3315262 3315284 0 0 Deletion 22 Homo FN3462-S Chr8 5328046 T-C 0 0 Single Base Substitution 0 Homo FN3462-S Chr9 103599 C-T 0 0 Single Base Substitution 0 HET FN3462-S Chr9 10370589 Chr4 14572701 0 Translocation 0 FN3462-S Chr9 13452843 13452860 0 0 Deletion 17 HET FN3462-S Chr9 15981556 15981558 0 0 Deletion 2 HET FN3462-S Chr9 15981803 A-T 0 0 Single Base Substitution 0 Homo FN3462-S Chr9 19697434 G-A 0 0 Single Base Substitution 0 Homo FN3462-S Chr9 20141017 20141035 0 0 Deletion 18 Homo FN3462-S Chr9 3244742 G-C 0 0 Single Base Substitution 0 HET