FN3464-S Chr1 3905569 T-A 0 0 Single Base Substitution 0 Homo FN3464-S Chr10 3793001 3815000 0 0 Deletion 21999 LOC_Os10g07229 dehydrogenase, putative, expressed FN3464-S Chr10 3793001 3815000 0 0 Deletion 21999 LOC_Os10g07248 transposon protein, putative, unclassified, expressed FN3464-S Chr10 7794683 8027190 0 0 Inversion 0 FN3464-S Chr10 7794683 8027190 0 0 Inversion 0 LOC_Os10g15250 retrotransposon protein, putative, unclassified, expressed FN3464-S Chr11 10483476 C-G 0 0 Single Base Substitution 0 Homo FN3464-S Chr11 14348713 A-G 0 0 Single Base Substitution 0 Homo FN3464-S Chr11 15593063 15593066 0 0 Deletion 3 HET FN3464-S Chr11 16230816 16230817 0 0 Insertion 1 HET FN3464-S Chr11 18146449 T-C 0 0 Single Base Substitution 0 Homo FN3464-S Chr11 22114605 22114609 0 0 Deletion 4 HET FN3464-S Chr11 23724653 Chr4 5910471 0 Translocation 0 FN3464-S Chr11 26563864 C-T 0 0 Single Base Substitution 0 Homo FN3464-S Chr11 3679677 Chr8 1216226 0 Translocation 0 FN3464-S Chr11 3907008 C-T 0 0 Single Base Substitution 0 HET FN3464-S Chr11 7848889 7848890 0 0 Insertion 1 HET FN3464-S Chr12 1324025 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g03410 expressed protein FN3464-S Chr12 20444974 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g33910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3464-S Chr12 22431133 C-T 0 0 Single Base Substitution 0 HET FN3464-S Chr12 26010003 C-T 0 0 Single Base Substitution 0 HET FN3464-S Chr12 8055511 G-A 0 0 Single Base Substitution 0 HET FN3464-S Chr12 9645747 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g16820 retrotransposon protein, putative, unclassified, expressed FN3464-S Chr2 23914001 23939000 0 0 Deletion 24999 LOC_Os02g39640 expressed protein FN3464-S Chr2 24758615 24758616 0 0 Insertion 1 HET FN3464-S Chr2 26740546 G-A 0 0 Single Base Substitution 0 Homo FN3464-S Chr2 29759412 A-G 0 0 Single Base Substitution 0 HET FN3464-S Chr3 10295894 T-A 0 0 Single Base Substitution 0 HET FN3464-S Chr3 14795365 A-G 0 0 Single Base Substitution 0 Homo FN3464-S Chr3 35032179 A-C 0 0 Single Base Substitution 0 Homo FN3464-S Chr3 7394975 T-A 0 0 Single Base Substitution 0 HET FN3464-S Chr4 11535953 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os04g20610 zinc knuckle domain containing protein, expressed FN3464-S Chr4 15399080 C-G 0 0 Single Base Substitution 0 Homo FN3464-S Chr4 17119663 17119672 0 0 Deletion 9 disruptive_inframe_deletion HET LOC_Os04g28880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3464-S Chr4 17120455 G-A 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os04g28880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3464-S Chr4 20365295 20365326 0 0 Deletion 31 Homo FN3464-S Chr4 21179046 21179063 0 0 Deletion 17 frameshift_variant HET LOC_Os04g34880 retrotransposon protein, putative, unclassified, expressed FN3464-S Chr4 23824349 23824359 0 0 Deletion 10 Homo FN3464-S Chr4 26936001 27001000 0 0 Deletion 64999 LOC_Os04g45540 retrotransposon protein, putative, unclassified, expressed FN3464-S Chr4 26936001 27001000 0 0 Deletion 64999 LOC_Os04g45550 retrotransposon protein, putative, unclassified, expressed FN3464-S Chr4 26936001 27001000 0 0 Deletion 64999 LOC_Os04g45560 hypothetical protein FN3464-S Chr4 26936001 27001000 0 0 Deletion 64999 LOC_Os04g45570 expressed protein FN3464-S Chr4 26936001 27001000 0 0 Deletion 64999 LOC_Os04g45580 kinesin motor domain containing protein, expressed FN3464-S Chr4 26936001 27001000 0 0 Deletion 64999 LOC_Os04g45590 glyoxalase family protein, putative, expressed FN3464-S Chr4 26936001 27001000 0 0 Deletion 64999 LOC_Os04g45600 NDH-M H PLASTOQUINONE DEHY, putative, expressed FN3464-S Chr4 26936001 27001000 0 0 Deletion 64999 LOC_Os04g45610 expressed protein FN3464-S Chr4 26936001 27001000 0 0 Deletion 64999 LOC_Os04g45620 expressed protein FN3464-S Chr4 26936001 27001000 0 0 Deletion 64999 LOC_Os04g45630 expressed protein FN3464-S Chr4 26936001 27001000 0 0 Deletion 64999 LOC_Os04g45640 hypothetical protein FN3464-S Chr4 26936001 27001000 0 0 Deletion 64999 LOC_Os04g45650 expressed protein FN3464-S Chr4 27415430 Chr1 33788767 0 Translocation 0 FN3464-S Chr4 27415430 Chr1 33788767 0 Translocation 0 LOC_Os01g58450 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3464-S Chr4 27415450 Chr1 33635166 0 Translocation 0 FN3464-S Chr4 27415450 Chr1 33635166 0 Translocation 0 LOC_Os01g58160 expressed protein FN3464-S Chr4 842831 Chr1 17044172 0 Translocation 0 FN3464-S Chr4 842831 Chr1 17044172 0 Translocation 0 LOC_Os01g31170 expressed protein FN3464-S Chr5 12775513 12775514 0 0 Insertion 1 HET FN3464-S Chr5 15383864 A-T 0 0 Single Base Substitution 0 Homo FN3464-S Chr5 2577208 T-G 0 0 Single Base Substitution 0 HET FN3464-S Chr5 2894914 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g05800 OsFBL21 - F-box domain and LRR containing protein, expressed FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06060 E3 ubiquitin-protein ligase SINA-like 2, putative, expressed FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06070 E3 ubiquitin-protein ligase SINA-like, putative, expressed FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06080 E3 ubiquitin-protein ligase SINA-like, putative, expressed FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06090 retrotransposon protein, putative, unclassified FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06100 E3 ubiquitin-protein ligase SINA-like 2, putative, expressed FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06110 villin, putative, expressed FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06120 ubiquitin conjugating enzyme protein, putative, expressed FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06130 transcription factor X1, putative, expressed FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06140 lipase, putative, expressed FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06150 vegetative storage protein, putative, expressed FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06160 trehalose phosphatase, putative, expressed FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06170 FAR1 family protein, expressed FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06180 expressed protein FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06190 expressed protein FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06200 transposon protein, putative, unclassified, expressed FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06210 transposon protein, putative, CACTA, En/Spm sub-class FN3464-S Chr5 3035001 3153000 0 0 Deletion 117999 LOC_Os05g06220 hypothetical protein FN3464-S Chr6 10454549 10454556 0 0 Deletion 7 Homo FN3464-S Chr6 14270898 C-T 0 0 Single Base Substitution 0 Homo FN3464-S Chr6 22493760 A-T 0 0 Single Base Substitution 0 HET FN3464-S Chr6 23340508 G-T 0 0 Single Base Substitution 0 Homo FN3464-S Chr6 9771489 G-A 0 0 Single Base Substitution 0 Homo FN3464-S Chr7 21501600 21501616 0 0 Deletion 16 HET FN3464-S Chr7 23624235 23624240 0 0 Deletion 5 Homo FN3464-S Chr7 24552898 24552899 0 0 Insertion 1 HET FN3464-S Chr7 26674590 T-C 0 0 Single Base Substitution 0 Homo FN3464-S Chr7 3980232 C-G 0 0 Single Base Substitution 0 HET FN3464-S Chr7 7994271 Chr4 24732557 0 Translocation 0 LOC_Os04g41720 retrotransposon, putative, centromere-specific, expressed FN3464-S Chr7 7994271 Chr4 24732557 0 Translocation 0 LOC_Os07g13990 retrotransposon, putative, centromere-specific, expressed FN3464-S Chr8 10206651 G-C 0 0 Single Base Substitution 0 Homo FN3464-S Chr8 12985850 12986006 0 0 Deletion 156 HET FN3464-S Chr8 24286990 A-G 0 0 Single Base Substitution 0 HET FN3464-S Chr8 6495314 6495511 0 0 Inversion 0 LOC_Os08g11030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3464-S Chr8 8130054 8130057 0 0 Insertion 3 HET FN3464-S Chr9 21714564 T-C 0 0 Single Base Substitution 0 HET FN3464-S Chr9 2737049 2737050 0 0 Deletion 1 frameshift_variant HET LOC_Os09g05080 retrotransposon protein, putative, unclassified, expressed FN3464-S Chr9 2751278 C-T 0 0 Single Base Substitution 0 HET FN3464-S Chr9 8223719 C-T 0 0 Single Base Substitution 0 Homo