FN3472-S Chr1 11502980 A-G 0 0 Single Base Substitution 0 HET FN3472-S Chr1 14495989 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g25580 retrotransposon protein, putative, unclassified, expressed FN3472-S Chr1 14680467 14680476 0 0 Deletion 9 splice_acceptor_variant&inframe_deletion&splice_region_variant&intron_variant HET LOC_Os01g25880 dephospho-CoA kinase, putative, expressed FN3472-S Chr1 22176861 22176865 0 0 Deletion 4 frameshift_variant&splice_region_variant HET LOC_Os01g39380 SCD1, putative, expressed FN3472-S Chr1 30768950 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g53580 3-5 exonuclease domain-containing protein, putative, expressed FN3472-S Chr1 32411948 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g56270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3472-S Chr1 32836306 G-A 0 0 Single Base Substitution 0 Homo FN3472-S Chr1 35048375 C-A 0 0 Single Base Substitution 0 Homo FN3472-S Chr1 39980291 39980292 0 0 Deletion 1 HET FN3472-S Chr1 7435409 T-A 0 0 Single Base Substitution 0 HET FN3472-S Chr1 7435410 T-A 0 0 Single Base Substitution 0 HET FN3472-S Chr1 7435411 C-T 0 0 Single Base Substitution 0 HET FN3472-S Chr1 9401968 C-A 0 0 Single Base Substitution 0 HET FN3472-S Chr10 15399535 15399612 0 0 Insertion 77 HET FN3472-S Chr10 18696259 18696263 0 0 Deletion 4 HET FN3472-S Chr10 22341001 22361000 0 0 Deletion 19999 FN3472-S Chr10 5222211 T-C 0 0 Single Base Substitution 0 HET FN3472-S Chr11 15587114 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os11g27080 retrotransposon protein, putative, unclassified, expressed FN3472-S Chr11 15590996 15590998 0 0 Deletion 2 Homo FN3472-S Chr11 23979076 23979087 0 0 Deletion 11 frameshift_variant Homo LOC_Os11g40200 expressed protein FN3472-S Chr11 26619552 Chr10 2078384 0 Translocation 0 FN3472-S Chr11 26619552 Chr10 2078384 0 Translocation 0 LOC_Os10g04400 transferase family protein, putative, expressed FN3472-S Chr11 26880375 G-C 0 0 Single Base Substitution 0 HET FN3472-S Chr11 8557428 8557431 0 0 Deletion 3 HET FN3472-S Chr12 14512718 T-C 0 0 Single Base Substitution 0 HET FN3472-S Chr12 25765518 25765535 0 0 Deletion 17 Homo FN3472-S Chr2 11717785 G-A 0 0 Single Base Substitution 0 Homo FN3472-S Chr2 15942001 15949000 0 0 Deletion 6999 LOC_Os02g27110 expressed protein FN3472-S Chr2 16321294 16321301 0 0 Deletion 7 HET FN3472-S Chr2 19152766 19152767 0 0 Deletion 1 HET FN3472-S Chr2 5721930 G-A 0 0 Single Base Substitution 0 HET FN3472-S Chr3 11206034 A-G 0 0 Single Base Substitution 0 Homo FN3472-S Chr3 17257358 C-T 0 0 Single Base Substitution 0 HET FN3472-S Chr3 17289654 17289667 0 0 Deletion 13 HET FN3472-S Chr3 1759358 T-C 0 0 Single Base Substitution 0 HET FN3472-S Chr3 19241144 G-A 0 0 Single Base Substitution 0 HET FN3472-S Chr3 22882232 22882234 0 0 Insertion 2 HET FN3472-S Chr3 23928888 23928898 0 0 Deletion 10 HET FN3472-S Chr3 33396424 33396429 0 0 Deletion 5 Homo FN3472-S Chr3 35253555 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g62240 expressed protein FN3472-S Chr3 8586441 Chr1 40408590 0 Translocation 0 LOC_Os01g69920 histidine kinase, putative, expressed FN3472-S Chr3 8586441 Chr1 40408590 0 Translocation 0 LOC_Os03g15580 AT hook motif family protein, expressed FN3472-S Chr3 8591774 Chr1 40408611 0 Translocation 0 LOC_Os01g69920 histidine kinase, putative, expressed FN3472-S Chr3 8591774 Chr1 40408611 0 Translocation 0 LOC_Os03g15580 AT hook motif family protein, expressed FN3472-S Chr4 12169992 12170048 0 0 Deletion 56 HET FN3472-S Chr4 12843857 12843862 0 0 Deletion 5 HET FN3472-S Chr4 32971452 C-T 0 0 Single Base Substitution 0 HET FN3472-S Chr4 3936467 G-A 0 0 Single Base Substitution 0 HET FN3472-S Chr4 4549862 G-T 0 0 Single Base Substitution 0 HET FN3472-S Chr4 4550949 G-T 0 0 Single Base Substitution 0 HET FN3472-S Chr5 12140692 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g20710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3472-S Chr5 14750524 Chr1 16483830 0 Translocation 0 LOC_Os01g29409 tRNA methyltransferase, putative, expressed FN3472-S Chr5 14750524 Chr1 16483830 0 Translocation 0 LOC_Os05g25390 tyrosine protein kinase domain containing protein, putative, expressed FN3472-S Chr5 14750868 Chr1 16483840 0 Translocation 0 LOC_Os01g29409 tRNA methyltransferase, putative, expressed FN3472-S Chr5 14750868 Chr1 16483840 0 Translocation 0 LOC_Os05g25390 tyrosine protein kinase domain containing protein, putative, expressed FN3472-S Chr5 26333603 T-C 0 0 Single Base Substitution 0 Homo FN3472-S Chr5 29330647 G-A 0 0 Single Base Substitution 0 Homo FN3472-S Chr5 9193047 T-A 0 0 Single Base Substitution 0 Homo FN3472-S Chr6 13224588 G-A 0 0 Single Base Substitution 0 HET FN3472-S Chr6 14310268 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g24420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3472-S Chr6 22350302 C-T 0 0 Single Base Substitution 0 Homo FN3472-S Chr6 24892699 C-T 0 0 Single Base Substitution 0 HET FN3472-S Chr6 26297662 T-C 0 0 Single Base Substitution 0 HET FN3472-S Chr6 5434641 5434645 0 0 Deletion 4 HET FN3472-S Chr6 8615563 T-G 0 0 Single Base Substitution 0 HET FN3472-S Chr7 24755189 24796948 0 0 Inversion 0 LOC_Os07g41310 COBRA, putative, expressed FN3472-S Chr7 24755189 24796948 0 0 Inversion 0 LOC_Os07g41380 retrotransposon protein, putative, unclassified, expressed FN3472-S Chr7 24994819 25001518 0 0 Inversion 0 LOC_Os07g41710 expressed protein FN3472-S Chr7 28347192 28347194 0 0 Insertion 2 frameshift_variant HET LOC_Os07g47410 WD40-like domain containing protein, putative, expressed FN3472-S Chr7 28594862 A-G 0 0 Single Base Substitution 0 HET FN3472-S Chr7 29201768 G-C 0 0 Single Base Substitution 0 HET FN3472-S Chr8 21690160 T-A 0 0 Single Base Substitution 0 HET FN3472-S Chr8 26438808 26438809 0 0 Deletion 1 Homo FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06760 expressed protein FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06770 expressed protein FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06780 OsFBDUF43 - F-box and DUF domain containing protein, expressed FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06790 expressed protein FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06800 retrotransposon protein, putative, unclassified, expressed FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06810 expressed protein FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06820 transposon protein, putative, unclassified, expressed FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06830 expressed protein FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06840 expressed protein FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06850 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06860 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06870 hypothetical protein FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06880 expressed protein FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06885 expressed protein FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06890 expressed protein FN3472-S Chr8 3780001 3853000 0 0 Deletion 72999 LOC_Os08g06900 retrotransposon protein, putative, unclassified FN3472-S Chr8 3856001 3875000 0 0 Deletion 18999 LOC_Os08g06910 retrotransposon protein, putative, unclassified FN3472-S Chr8 3856001 3875000 0 0 Deletion 18999 LOC_Os08g06920 retrotransposon protein, putative, unclassified, expressed FN3472-S Chr8 3856001 3875000 0 0 Deletion 18999 LOC_Os08g06930 transposon protein, putative, unclassified, expressed FN3472-S Chr8 3856001 3875000 0 0 Deletion 18999 LOC_Os08g06940 expressed protein FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g06970 transposon protein, putative, CACTA, En/Spm sub-class FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g06980 retrotransposon protein, putative, Ty1-copia subclass FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07000 retrotransposon protein, putative, Ty3-gypsy subclass FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07010 ABC-2 type transporter domain containing protein, expressed FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07020 expressed protein FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07030 hypothetical protein FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07040 plant protein of unknown function domain containing protein, expressed FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07050 pentatricopeptide, putative, expressed FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07060 CRR6, putative, expressed FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07070 expressed protein FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07080 terpene synthase, putative, expressed FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07090 expressed protein FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07100 terpene synthase, putative, expressed FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07120 terpene synthase, putative, expressed FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07130 transposon protein, putative, unclassified, expressed FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07140 transposon protein, putative, unclassified, expressed FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07160 expressed protein FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07170 cytokinin-O-glucosyltransferase 2, putative, expressed FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07180 cytokinin-O-glucosyltransferase 2, putative, expressed FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07200 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07210 hypothetical protein FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07230 retrotransposon protein, putative, unclassified, expressed FN3472-S Chr8 3885001 4051000 0 0 Deletion 165999 LOC_Os08g07240 expressed protein FN3472-S Chr8 4001662 4001676 0 0 Deletion 14 HET FN3472-S Chr8 4056001 4121000 0 0 Deletion 64999 LOC_Os08g07270 glycosyltransferase, putative, expressed FN3472-S Chr8 4056001 4121000 0 0 Deletion 64999 LOC_Os08g07280 expressed protein FN3472-S Chr8 4056001 4121000 0 0 Deletion 64999 LOC_Os08g07290 HEAT repeat family protein, putative, expressed FN3472-S Chr8 4056001 4121000 0 0 Deletion 64999 LOC_Os08g07300 haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed FN3472-S Chr8 4056001 4121000 0 0 Deletion 64999 LOC_Os08g07320 expressed protein FN3472-S Chr8 4056001 4121000 0 0 Deletion 64999 LOC_Os08g07330 RGH1A, putative, expressed FN3472-S Chr8 4056001 4121000 0 0 Deletion 64999 LOC_Os08g07340 mla1, putative, expressed FN3472-S Chr8 4056001 4121000 0 0 Deletion 64999 LOC_Os08g07350 hypothetical protein FN3472-S Chr8 4056001 4121000 0 0 Deletion 64999 LOC_Os08g07360 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3472-S Chr8 7970929 C-A 0 0 Single Base Substitution 0 HET FN3472-S Chr9 10467393 10467395 0 0 Deletion 2 Homo FN3472-S Chr9 13718811 13718828 0 0 Deletion 17 Homo FN3472-S Chr9 20960122 Chr1 4271568 0 Translocation 0 LOC_Os09g36310 expressed protein FN3472-S Chr9 20960456 Chr1 4271562 0 Translocation 0 LOC_Os09g36310 expressed protein FN3472-S Chr9 3100253 C-A 0 0 Single Base Substitution 0 HET