FN3478-S Chr1 28838909 T-C 0 0 Single Base Substitution 0 HET FN3478-S Chr1 7031225 G-A 0 0 Single Base Substitution 0 HET FN3478-S Chr10 16647889 G-C 0 0 Single Base Substitution 0 HET FN3478-S Chr10 22714062 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g42202 expressed protein FN3478-S Chr10 22827630 C-T 0 0 Single Base Substitution 0 HET FN3478-S Chr10 22897440 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g42470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr10 2607375 Chr6 15332606 0 Translocation 0 LOC_Os10g05270 retrotransposon protein, putative, Ty3-gypsy subclass FN3478-S Chr10 3198498 C-G 0 0 Single Base Substitution 0 Homo FN3478-S Chr10 9030711 9030714 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os10g17850 retrotransposon protein, putative, Ty3-gypsy subclass FN3478-S Chr11 11681298 C-T 0 0 Single Base Substitution 0 Homo FN3478-S Chr11 15940796 C-T 0 0 Single Base Substitution 0 Homo FN3478-S Chr11 18635544 18885995 0 0 Inversion 0 FN3478-S Chr11 18635544 18885995 0 0 Inversion 0 LOC_Os11g32050 expressed protein FN3478-S Chr11 18635760 18886001 0 0 Inversion 0 FN3478-S Chr11 18635760 18886001 0 0 Inversion 0 LOC_Os11g32050 expressed protein FN3478-S Chr11 21083952 21083953 0 0 Deletion 1 HET FN3478-S Chr12 14643766 Chr5 26222273 0 Translocation 0 LOC_Os05g45160 retrotransposon protein, putative, unclassified, expressed FN3478-S Chr12 14643766 Chr5 26222273 0 Translocation 0 LOC_Os12g25380 retrotransposon protein, putative, unclassified, expressed FN3478-S Chr12 14643817 Chr5 26221419 0 Translocation 0 LOC_Os05g45160 retrotransposon protein, putative, unclassified, expressed FN3478-S Chr12 14643817 Chr5 26221419 0 Translocation 0 LOC_Os12g25380 retrotransposon protein, putative, unclassified, expressed FN3478-S Chr12 15971764 15971775 0 0 Deletion 11 HET FN3478-S Chr12 15975498 C-T 0 0 Single Base Substitution 0 HET FN3478-S Chr12 3427962 Chr11 18635753 0 Translocation 0 LOC_Os12g07000 retrotransposon protein, putative, Ty1-copia subclass FN3478-S Chr12 3427969 Chr11 18635548 0 Translocation 0 LOC_Os12g07000 retrotransposon protein, putative, Ty1-copia subclass FN3478-S Chr12 5665864 5665867 0 0 Deletion 3 HET FN3478-S Chr2 20212566 A-G 0 0 Single Base Substitution 0 HET FN3478-S Chr2 28193151 C-T 0 0 Single Base Substitution 0 Homo FN3478-S Chr2 28195617 T-C 0 0 Single Base Substitution 0 Homo FN3478-S Chr3 1586001 1600000 0 0 Deletion 13999 LOC_Os03g03610 1,3-beta-glucan synthase component domain containing protein, expressed FN3478-S Chr3 1808636 G-A 0 0 Single Base Substitution 0 Homo FN3478-S Chr3 25516861 C-T 0 0 Single Base Substitution 0 Homo FN3478-S Chr4 12740417 G-T 0 0 Single Base Substitution 0 HET FN3478-S Chr4 13072197 13072199 0 0 Deletion 2 HET FN3478-S Chr4 19449360 19499759 0 0 Inversion 0 LOC_Os04g32440 retrotransposon protein, putative, unclassified, expressed FN3478-S Chr4 19449360 19499759 0 0 Inversion 0 LOC_Os04g32490 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed FN3478-S Chr4 30371454 30371470 0 0 Deletion 16 Homo FN3478-S Chr4 34221454 34221456 0 0 Deletion 2 HET FN3478-S Chr5 10158990 10361073 0 0 Inversion 0 LOC_Os05g17650 retrotransposon protein, putative, unclassified, expressed FN3478-S Chr5 10158990 10361073 0 0 Inversion 0 LOC_Os05g18010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10165622 10165623 0 0 Deletion 1 HET FN3478-S Chr5 10361001 10373000 0 0 Deletion 11999 LOC_Os05g18010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10361001 10373000 0 0 Deletion 11999 LOC_Os05g18030 retrotransposon protein, putative, unclassified FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18050 retrotransposon protein, putative, unclassified FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18060 retrotransposon protein, putative, unclassified FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18080 retrotransposon protein, putative, Ty3-gypsy subclass FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18090 SHR5-receptor-like kinase, putative, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18120 expressed protein FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18130 expressed protein FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18140 retrotransposon, putative, centromere-specific FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18150 expressed protein FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18160 retrotransposon protein, putative, unclassified FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18170 retrotransposon, putative, centromere-specific, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18180 retrotransposon, putative, centromere-specific, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18220 retrotransposon protein, putative, unclassified FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18250 retrotransposon, putative, centromere-specific FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18260 retrotransposon protein, putative, unclassified FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18270 retrotransposon protein, putative, unclassified FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18274 expressed protein FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18280 kelch domain containing protein, putative, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18294 SEC14 cytosolic factor family protein, putative, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18310 retrotransposon protein, putative, Ty3-gypsy subclass FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18320 transposon protein, putative, unclassified FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18350 retrotransposon, putative, centromere-specific, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18360 retrotransposon protein, putative, unclassified FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18370 retrotransposon protein, putative, unclassified FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10376001 10622000 0 0 Deletion 245999 LOC_Os05g18390 retrotransposon protein, putative, Ty3-gypsy subclass FN3478-S Chr5 10627001 10679000 0 0 Deletion 51999 LOC_Os05g18400 retrotransposon protein, putative, unclassified FN3478-S Chr5 10627001 10679000 0 0 Deletion 51999 LOC_Os05g18410 retrotransposon protein, putative, Ty1-copia subclass FN3478-S Chr5 10627001 10679000 0 0 Deletion 51999 LOC_Os05g18419 retrotransposon, putative, centromere-specific FN3478-S Chr5 10627001 10679000 0 0 Deletion 51999 LOC_Os05g18446 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10627001 10679000 0 0 Deletion 51999 LOC_Os05g18470 CRAL/TRIO domain containing protein, expressed FN3478-S Chr5 10627001 10679000 0 0 Deletion 51999 LOC_Os05g18480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3478-S Chr5 10751001 10825000 0 0 Deletion 73999 LOC_Os05g18570 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3478-S Chr5 10751001 10825000 0 0 Deletion 73999 LOC_Os05g18604 OsSCP28 - Putative Serine Carboxypeptidase homologue, expressed FN3478-S Chr5 10751001 10825000 0 0 Deletion 73999 LOC_Os05g18640 expressed protein FN3478-S Chr5 10751001 10825000 0 0 Deletion 73999 LOC_Os05g18650 expressed protein FN3478-S Chr5 10751001 10825000 0 0 Deletion 73999 LOC_Os05g18660 OsFBDUF24 - F-box and DUF domain containing protein, expressed FN3478-S Chr5 10751001 10825000 0 0 Deletion 73999 LOC_Os05g18670 C4-dicarboxylate transporter/malic acid transport protein domain containing protein, expressed FN3478-S Chr5 10751001 10825000 0 0 Deletion 73999 LOC_Os05g18680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3478-S Chr6 17364850 G-A 0 0 Single Base Substitution 0 HET FN3478-S Chr6 23008838 G-A 0 0 Single Base Substitution 0 HET FN3478-S Chr6 28780606 A-T 0 0 Single Base Substitution 0 HET FN3478-S Chr7 10345001 10370000 0 0 Deletion 24999 LOC_Os07g17500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3478-S Chr7 10345001 10370000 0 0 Deletion 24999 LOC_Os07g17510 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3478-S Chr7 10345001 10370000 0 0 Deletion 24999 LOC_Os07g17520 expressed protein FN3478-S Chr7 10345001 10370000 0 0 Deletion 24999 LOC_Os07g17530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3478-S Chr7 10345001 10370000 0 0 Deletion 24999 LOC_Os07g17540 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3478-S Chr7 10373163 Chr4 19499763 0 Translocation 0 LOC_Os04g32490 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed FN3478-S Chr7 10373163 Chr4 19499763 0 Translocation 0 LOC_Os07g17550 hypothetical protein FN3478-S Chr7 10375322 Chr4 19449362 0 Translocation 0 FN3478-S Chr7 10375322 Chr4 19449362 0 Translocation 0 LOC_Os04g32440 retrotransposon protein, putative, unclassified, expressed FN3478-S Chr7 10666097 C-T 0 0 Single Base Substitution 0 HET FN3478-S Chr7 19266452 C-A 0 0 Single Base Substitution 0 HET FN3478-S Chr7 19699523 C-T 0 0 Single Base Substitution 0 HET FN3478-S Chr7 21903012 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g36610 CSLF9 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN3478-S Chr7 5586967 5586968 0 0 Deletion 1 HET FN3478-S Chr7 7198081 G-T 0 0 Single Base Substitution 0 HET FN3478-S Chr7 9977855 Chr2 19708342 0 Translocation 0 LOC_Os07g16960 glycosyl transferase, group 1 domain containing protein, expressed FN3478-S Chr8 10859833 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g17750 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3478-S Chr8 17680095 Chr5 24648620 0 Translocation 0 FN3478-S Chr8 17680101 Chr5 24649106 0 Translocation 0 FN3478-S Chr8 27726962 A-T 0 0 Single Base Substitution 0 HET FN3478-S Chr9 10921480 10921511 0 0 Deletion 31 HET FN3478-S Chr9 12941650 12941652 0 0 Deletion 2 frameshift_variant Homo LOC_Os09g21420 transposon protein, putative, unclassified, expressed FN3478-S Chr9 14806864 14806866 0 0 Deletion 2 HET FN3478-S Chr9 1656772 T-G 0 0 Single Base Substitution 0 HET FN3478-S Chr9 17624438 17624441 0 0 Insertion 3 inframe_insertion HET LOC_Os09g28990 retrotransposon protein, putative, Ty3-gypsy subclass FN3478-S Chr9 2483398 2483403 0 0 Deletion 5 frameshift_variant HET LOC_Os09g04660 retrotransposon protein, putative, unclassified, expressed FN3478-S Chr9 8921310 8921324 0 0 Deletion 14 Homo FN3478-S Chr9 942229 T-C 0 0 Single Base Substitution 0 HET