FN3490-S Chr1 1213455 1213461 0 0 Insertion 6 HET FN3490-S Chr1 14493167 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g25580 retrotransposon protein, putative, unclassified, expressed FN3490-S Chr1 18944247 18944257 0 0 Deletion 10 frameshift_variant HET LOC_Os01g34350 RNA-dependent RNA polymerase, putative, expressed FN3490-S Chr1 25544001 25567000 0 0 Deletion 22999 LOC_Os01g45020 F-box protein interaction domain containing protein, expressed FN3490-S Chr1 25544001 25567000 0 0 Deletion 22999 LOC_Os01g45030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3490-S Chr1 25544001 25567000 0 0 Deletion 22999 LOC_Os01g45040 Leucine rich repeat N-terminal domain containing protein, putative, expressed FN3490-S Chr1 25571001 25635000 0 0 Deletion 63999 LOC_Os01g45050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3490-S Chr1 25571001 25635000 0 0 Deletion 63999 LOC_Os01g45060 polygalacturonase, putative, expressed FN3490-S Chr1 25571001 25635000 0 0 Deletion 63999 LOC_Os01g45070 peptide deformylase, putative, expressed FN3490-S Chr1 25571001 25635000 0 0 Deletion 63999 LOC_Os01g45080 expressed protein FN3490-S Chr1 25571001 25635000 0 0 Deletion 63999 LOC_Os01g45090 MYB family transcription factor, putative, expressed FN3490-S Chr1 25571001 25635000 0 0 Deletion 63999 LOC_Os01g45100 retrotransposon protein, putative, unclassified, expressed FN3490-S Chr1 25571001 25635000 0 0 Deletion 63999 LOC_Os01g45110 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed FN3490-S Chr1 25571001 25635000 0 0 Deletion 63999 LOC_Os01g45120 expressed protein FN3490-S Chr1 25571001 25635000 0 0 Deletion 63999 LOC_Os01g45130 hypothetical protein FN3490-S Chr1 25571001 25635000 0 0 Deletion 63999 LOC_Os01g45140 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed FN3490-S Chr1 25571001 25635000 0 0 Deletion 63999 LOC_Os01g45150 expressed protein FN3490-S Chr1 25571001 25635000 0 0 Deletion 63999 LOC_Os01g45160 expressed protein FN3490-S Chr1 25571001 25635000 0 0 Deletion 63999 LOC_Os01g45174 transposon protein, putative, unclassified, expressed FN3490-S Chr1 33912299 33912303 0 0 Deletion 4 HET FN3490-S Chr1 38165152 38165161 0 0 Deletion 9 HET FN3490-S Chr1 5375274 G-A 0 0 Single Base Substitution 0 Homo FN3490-S Chr1 6068268 6068269 0 0 Deletion 1 HET FN3490-S Chr10 10721156 T-A 0 0 Single Base Substitution 0 HET FN3490-S Chr10 15807017 T-C 0 0 Single Base Substitution 0 Homo FN3490-S Chr10 15807026 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os10g30410 cytochrome P450 71D7, putative, expressed FN3490-S Chr10 594543 594551 0 0 Deletion 8 HET FN3490-S Chr10 633868 T-A 0 0 Single Base Substitution 0 HET FN3490-S Chr11 1003684 Chr3 15239893 0 Translocation 0 FN3490-S Chr11 1003684 Chr3 15239893 0 Translocation 0 LOC_Os03g26690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3490-S Chr11 13486782 C-T 0 0 Single Base Substitution 0 Homo FN3490-S Chr11 17345185 A-G 0 0 Single Base Substitution 0 HET FN3490-S Chr11 17536668 17536669 0 0 Insertion 1 HET FN3490-S Chr11 186513 C-T 0 0 Single Base Substitution 0 HET FN3490-S Chr12 12774865 12903188 0 0 Inversion 0 LOC_Os12g22610 retrotransposon protein, putative, unclassified, expressed FN3490-S Chr12 12777199 12903193 0 0 Inversion 0 LOC_Os12g22610 retrotransposon protein, putative, unclassified, expressed FN3490-S Chr12 16284317 C-T 0 0 Single Base Substitution 0 HET FN3490-S Chr12 23693715 23693717 0 0 Insertion 2 HET FN3490-S Chr12 4999622 C-G 0 0 Single Base Substitution 0 HET FN3490-S Chr2 17775595 A-T 0 0 Single Base Substitution 0 Homo FN3490-S Chr2 17775596 A-T 0 0 Single Base Substitution 0 Homo FN3490-S Chr2 17775597 G-T 0 0 Single Base Substitution 0 Homo FN3490-S Chr2 29140617 29140624 0 0 Deletion 7 Homo FN3490-S Chr2 32692759 32692767 0 0 Deletion 8 Homo FN3490-S Chr2 4011308 Chr1 25546675 0 Translocation 0 FN3490-S Chr2 4011308 Chr1 25546675 0 Translocation 0 LOC_Os01g45020 F-box protein interaction domain containing protein, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07700 expressed protein FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07709 expressed protein FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07720 cytidylyltransferase domain containing protein, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07730 haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07740 RNA binding protein, putative, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07750 cell cycle control protein, putative, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07760 aldehyde dehydrogenase, putative, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07770 Myb transcription factor, putative, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07780 OsSPL4 - SBP-box gene family member, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07790 serine/threonine-protein kinase HT1, putative, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07800 transcription factor, putative, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07810 inactive receptor kinase At2g26730 precursor, putative, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07820 DUF581 domain containing protein, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07830 OsHKT1;3 - Na+ transporter, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07840 bZIP transcription factor domain containing protein, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07850 DUF630/DUF632 domains containing protein, putative, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07860 conserved hypothetical protein FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07870 ATP synthase, putative, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07880 DNA binding protein, putative, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07890 60S ribosomal protein L27a-3, putative, expressed FN3490-S Chr2 4015001 4141000 0 0 Deletion 125999 LOC_Os02g07900 ANTH/ENTH domain containing protein, putative, expressed FN3490-S Chr2 4141358 Chr1 25537348 0 Translocation 0 FN3490-S Chr2 4141358 Chr1 25537348 0 Translocation 0 LOC_Os01g45010 expressed protein FN3490-S Chr2 5286695 Chr1 25905213 0 Translocation 0 FN3490-S Chr2 6240090 G-T 0 0 Single Base Substitution 0 HET FN3490-S Chr2 6240091 G-T 0 0 Single Base Substitution 0 HET FN3490-S Chr2 6240285 Chr1 25905088 0 Translocation 0 FN3490-S Chr3 18687970 T-C 0 0 Single Base Substitution 0 Homo FN3490-S Chr3 25112131 25112132 0 0 Deletion 1 Homo FN3490-S Chr3 29194440 Chr1 31269094 0 Translocation 0 FN3490-S Chr3 33881662 A-G 0 0 Single Base Substitution 0 HET FN3490-S Chr3 487107 C-T 0 0 Single Base Substitution 0 Homo FN3490-S Chr4 10891672 G-A 0 0 Single Base Substitution 0 Homo FN3490-S Chr4 12158426 12158433 0 0 Deletion 7 frameshift_variant HET LOC_Os04g21500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3490-S Chr4 14166662 14166664 0 0 Insertion 2 HET FN3490-S Chr4 27485279 27485289 0 0 Insertion 10 HET FN3490-S Chr4 30850001 30861000 0 0 Deletion 10999 LOC_Os04g51970 synaptic vesicle 2-related protein, putative, expressed FN3490-S Chr4 30850001 30861000 0 0 Deletion 10999 LOC_Os04g51980 transferase family domain containing protein, expressed FN3490-S Chr4 34832270 34832271 0 0 Deletion 1 HET FN3490-S Chr4 35159243 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g59100 retrotransposon protein, putative, unclassified, expressed FN3490-S Chr5 19314821 19809031 0 0 Inversion 0 FN3490-S Chr5 5661449 5661450 0 0 Insertion 1 HET FN3490-S Chr6 10177701 Chr2 13594352 0 Translocation 0 FN3490-S Chr6 11374790 T-A 0 0 Single Base Substitution 0 HET FN3490-S Chr6 11837088 G-C 0 0 Single Base Substitution 0 HET FN3490-S Chr6 1273654 1273672 0 0 Deletion 18 Homo FN3490-S Chr6 15619361 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os06g27600 retrotransposon protein, putative, unclassified FN3490-S Chr6 19463369 C-T 0 0 Single Base Substitution 0 HET FN3490-S Chr6 25087126 25943753 0 0 Inversion 0 LOC_Os06g41840 reductase, putative, expressed FN3490-S Chr6 25087156 Chr5 27395775 0 Translocation 0 LOC_Os06g41840 reductase, putative, expressed FN3490-S Chr6 25091440 A-T 0 0 Single Base Substitution 0 Homo FN3490-S Chr6 25943761 Chr5 27392575 0 Translocation 0 FN3490-S Chr7 15662842 T-A 0 0 Single Base Substitution 0 Homo FN3490-S Chr7 2738610 C-T 0 0 Single Base Substitution 0 HET FN3490-S Chr7 29086688 29086689 0 0 Deletion 1 HET FN3490-S Chr7 3407927 3407928 0 0 Deletion 1 HET FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02120 flavin-containing monooxygenase family protein, putative, expressed FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02130 flavin-containing monooxygenase family protein, putative, expressed FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02140 flavin-containing monooxygenase family protein, putative, expressed FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02150 3-5 exonuclease domain-containing protein, putative, expressed FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02170 3-5 exonuclease domain-containing protein, putative, expressed FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02180 3-5 exonuclease domain-containing protein, putative, expressed FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02192 expressed protein FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02200 plastocyanin-like domain containing protein, putative, expressed FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02210 eukaryotic translation initiation factor 5A, putative, expressed FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02230 retrotransposon protein, putative, unclassified, expressed FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02240 transcription factor X1, putative, expressed FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02250 expressed protein FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02260 expressed protein FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02270 expressed protein FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02280 pentatricopeptide, putative, expressed FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02290 OsFBX208 - F-box domain containing protein, expressed FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02300 tetratricopeptide repeat domain containing protein, expressed FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3490-S Chr7 672001 786000 0 0 Deletion 113999 LOC_Os07g02330 protein phosphatase 2C, putative, expressed FN3490-S Chr8 10000723 C-A 0 0 Single Base Substitution 0 Homo FN3490-S Chr8 10904277 Chr6 31115349 0 Translocation 0 LOC_Os08g17784 purple acid phosphatase, putative, expressed FN3490-S Chr8 13925288 13925298 0 0 Deletion 10 HET FN3490-S Chr8 16820588 Chr4 10714575 0 Translocation 0 LOC_Os08g27590 retrotransposon protein, putative, unclassified, expressed FN3490-S Chr9 10850315 C-T 0 0 Single Base Substitution 0 HET FN3490-S Chr9 19177732 19177735 0 0 Deletion 3 Homo FN3490-S Chr9 8228159 Chr5 8546761 0 Translocation 0 FN3490-S Chr9 9235241 T-G 0 0 Single Base Substitution 0 HET FN3490-S Chr9 9243188 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g15220 retrotransposon protein, putative, unclassified, expressed FN3490-S Chr9 9243190 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g15220 retrotransposon protein, putative, unclassified, expressed