FN3495-S Chr1 22707001 22729000 0 0 Deletion 21999 LOC_Os01g40240 expressed protein FN3495-S Chr1 22707001 22729000 0 0 Deletion 21999 LOC_Os01g40250 down-regulated in metastasis family protein, expressed FN3495-S Chr1 25180949 25180953 0 0 Deletion 4 HET FN3495-S Chr1 29654001 29671000 0 0 Deletion 16999 LOC_Os01g51630 XIE, putative, expressed FN3495-S Chr1 29654001 29671000 0 0 Deletion 16999 LOC_Os01g51632 myosin XI, putative, expressed FN3495-S Chr1 29654001 29671000 0 0 Deletion 16999 LOC_Os01g51634 myosin-2 heavy chain, non muscle, putative, expressed FN3495-S Chr1 30462613 A-G 0 0 Single Base Substitution 0 HET FN3495-S Chr1 40171836 C-T 0 0 Single Base Substitution 0 HET FN3495-S Chr1 614200 614202 0 0 Insertion 2 HET FN3495-S Chr1 875312 875313 0 0 Insertion 1 HET FN3495-S Chr10 10887501 10887502 0 0 Deletion 1 HET FN3495-S Chr10 17729254 17729256 0 0 Deletion 2 HET FN3495-S Chr10 18609001 18620000 0 0 Deletion 10999 LOC_Os10g34880 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN3495-S Chr10 18609001 18620000 0 0 Deletion 10999 LOC_Os10g34884 RIPER7 - Ripening-related family protein precursor, expressed FN3495-S Chr10 20053257 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os10g37468 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3495-S Chr10 5901719 5901724 0 0 Deletion 5 frameshift_variant Homo LOC_Os10g10680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3495-S Chr11 12896705 G-C 0 0 Single Base Substitution 0 Homo FN3495-S Chr11 1543117 C-A 0 0 Single Base Substitution 0 Homo FN3495-S Chr11 6690668 Chr1 43063078 0 Translocation 0 LOC_Os11g12020 disease resistance protein, putative FN3495-S Chr11 8398561 Chr1 43063852 0 Translocation 0 FN3495-S Chr11 8398561 Chr1 43063852 0 Translocation 0 LOC_Os01g74320 ubiquitin ligase, putative, expressed FN3495-S Chr12 14761777 T-C 0 0 Single Base Substitution 0 HET FN3495-S Chr12 25174117 25174119 0 0 Insertion 2 HET FN3495-S Chr12 25198545 T-A 0 0 Single Base Substitution 0 Homo FN3495-S Chr12 8617892 A-C 0 0 Single Base Substitution 0 HET FN3495-S Chr2 24967506 24967515 0 0 Deletion 9 Homo FN3495-S Chr2 3579220 G-A 0 0 Single Base Substitution 0 HET FN3495-S Chr3 2193515 2193516 0 0 Insertion 1 HET FN3495-S Chr3 24716638 G-T 0 0 Single Base Substitution 0 Homo FN3495-S Chr3 24821844 24821857 0 0 Deletion 13 Homo FN3495-S Chr3 24874723 A-G 0 0 Single Base Substitution 0 HET FN3495-S Chr3 24891905 G-A 0 0 Single Base Substitution 0 Homo FN3495-S Chr3 266461 T-G 0 0 Single Base Substitution 0 HET FN3495-S Chr3 30796710 30796713 0 0 Deletion 3 stop_gained&disruptive_inframe_deletion HET LOC_Os03g53710 aldose 1-epimerase, putative, expressed FN3495-S Chr4 13393452 13393458 0 0 Deletion 6 Homo FN3495-S Chr4 19166494 C-G 0 0 Single Base Substitution 0 HET FN3495-S Chr4 26407001 26417000 0 0 Deletion 9999 LOC_Os04g44630 transposon protein, putative, unclassified, expressed FN3495-S Chr4 26407001 26417000 0 0 Deletion 9999 LOC_Os04g44640 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN3495-S Chr4 30262830 30262842 0 0 Deletion 12 disruptive_inframe_deletion HET LOC_Os04g51090 tRNA-splicing endonuclease positive effector-related, putative, expressed FN3495-S Chr4 30450572 30450589 0 0 Deletion 17 HET FN3495-S Chr4 32899475 C-T 0 0 Single Base Substitution 0 HET FN3495-S Chr4 33639617 A-G 0 0 Single Base Substitution 0 Homo FN3495-S Chr5 1205001 1223000 0 0 Deletion 17999 LOC_Os05g03080 expressed protein FN3495-S Chr5 1205001 1223000 0 0 Deletion 17999 LOC_Os05g03090 transposon protein, putative, unclassified, expressed FN3495-S Chr5 12880529 12880534 0 0 Deletion 5 HET FN3495-S Chr5 14794105 G-C 0 0 Single Base Substitution 0 HET FN3495-S Chr5 16525001 16560000 0 0 Deletion 34999 LOC_Os05g28220 retrotransposon protein, putative, unclassified, expressed FN3495-S Chr5 16525001 16560000 0 0 Deletion 34999 LOC_Os05g28240 retrotransposon protein, putative, unclassified FN3495-S Chr5 16525001 16560000 0 0 Deletion 34999 LOC_Os05g28250 retrotransposon, putative, centromere-specific FN3495-S Chr5 16525001 16560000 0 0 Deletion 34999 LOC_Os05g28260 expressed protein FN3495-S Chr5 16525001 16560000 0 0 Deletion 34999 LOC_Os05g28270 transposon protein, putative, unclassified, expressed FN3495-S Chr5 16525001 16560000 0 0 Deletion 34999 LOC_Os05g28280 peptidase, M24 family protein, putative, expressed FN3495-S Chr5 16525001 16560000 0 0 Deletion 34999 LOC_Os05g28290 ranBP1 domain containing protein, expressed FN3495-S Chr5 16736557 T-A 0 0 Single Base Substitution 0 HET FN3495-S Chr5 27850188 27850211 0 0 Deletion 23 frameshift_variant HET LOC_Os05g48590 OsIAA19 - Auxin-responsive Aux/IAA gene family member, expressed FN3495-S Chr5 5492909 A-C 0 0 Single Base Substitution 0 HET FN3495-S Chr6 10602566 C-T 0 0 Single Base Substitution 0 Homo FN3495-S Chr6 12733345 12733346 0 0 Deletion 1 Homo FN3495-S Chr6 12982487 12982846 0 0 Inversion 0 FN3495-S Chr6 19620837 19620838 0 0 Insertion 1 frameshift_variant Homo LOC_Os06g33720 flavin-containing monooxygenase family protein, putative, expressed FN3495-S Chr6 23207489 Chr2 17614215 0 Translocation 0 LOC_Os06g39090 transposon protein, putative, unclassified, expressed FN3495-S Chr6 28211001 28225000 0 0 Deletion 13999 LOC_Os06g46475 WD domain, G-beta repeat domain containing protein, expressed FN3495-S Chr7 18249996 18250001 0 0 Deletion 5 HET FN3495-S Chr7 6837035 6837051 0 0 Deletion 16 Homo FN3495-S Chr7 9948262 9948282 0 0 Deletion 20 Homo FN3495-S Chr8 13525340 Chr6 23975322 0 Translocation 0 LOC_Os06g40240 retrotransposon protein, putative, unclassified, expressed FN3495-S Chr8 13525340 Chr6 23975322 0 Translocation 0 LOC_Os08g22410 retrotransposon protein, putative, unclassified, expressed FN3495-S Chr8 16576616 16576617 0 0 Deletion 1 HET FN3495-S Chr8 20490212 20490222 0 0 Deletion 10 Homo FN3495-S Chr8 26323932 T-C 0 0 Single Base Substitution 0 HET FN3495-S Chr8 26449260 G-C 0 0 Single Base Substitution 0 HET FN3495-S Chr8 300448 A-G 0 0 Single Base Substitution 0 Homo FN3495-S Chr8 4115814 T-C 0 0 Single Base Substitution 0 Homo FN3495-S Chr8 9912028 Chr3 23252460 0 Translocation 0 FN3495-S Chr9 1116956 1116962 0 0 Deletion 6 HET FN3495-S Chr9 12783356 12783359 0 0 Insertion 3 HET FN3495-S Chr9 14806864 14806866 0 0 Insertion 2 Homo FN3495-S Chr9 18583835 18583845 0 0 Deletion 10 Homo FN3495-S Chr9 18585360 C-G 0 0 Single Base Substitution 0 Homo FN3495-S Chr9 18897080 C-T 0 0 Single Base Substitution 0 Homo FN3495-S Chr9 3381506 Chr3 20592854 0 Translocation 0 FN3495-S Chr9 3381506 Chr3 20592854 0 Translocation 0 LOC_Os03g37140 expressed protein FN3495-S Chr9 3381671 Chr3 20592861 0 Translocation 0 FN3495-S Chr9 3381671 Chr3 20592861 0 Translocation 0 LOC_Os03g37140 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g09880 transposon protein, putative, CACTA, En/Spm sub-class FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g09890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g09900 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g09910 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g09920 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g09930 heavy metal transport/detoxification protein, putative, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g09940 hypothetical protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g09944 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g09960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g09970 retrotransposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g09980 glucan endo-1,3-beta-glucosidase precursor, putative, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g09990 transposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10000 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10010 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10020 transposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10030 retrotransposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10054 disease resistance protein RPS2, putative, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10090 retrotransposon protein, putative, unclassified FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10100 retrotransposon protein, putative, unclassified FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10109 retrotransposon protein, putative, Ty3-gypsy subclass FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10120 retrotransposon protein, putative, unclassified FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10130 retrotransposon protein, putative, Ty3-gypsy subclass FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10140 retrotransposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10149 retrotransposon protein, putative, Ty3-gypsy subclass FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10160 retrotransposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10180 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10190 transposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10200 Skp1 family, dimerisation domain containing protein, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10201 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10204 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10210 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10220 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10230 Skp1 family, dimerisation domain containing protein, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10240 retrotransposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10250 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10260 Skp1 family, dimerisation domain containing protein, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10270 SKP1-like protein 1B, putative, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10274 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10280 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10290 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10300 Skp1 family, dimerisation domain containing protein, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10310 retrotransposon protein, putative, Ty3-gypsy subclass FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10320 transposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10330 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10340 cytochrome P450, putative, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10350 transposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10360 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10370 hypothetical protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10380 transposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10390 retrotransposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10400 transposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10410 retrotransposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10420 retrotransposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10430 retrotransposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10440 retrotransposon protein, putative, Ty3-gypsy subclass FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10460 transposon protein, putative, unclassified FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10480 retrotransposon protein, putative, Ty3-gypsy subclass FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10500 retrotransposon protein, putative, Ty3-gypsy subclass FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10520 hypothetical protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10530 retrotransposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10550 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10560 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10570 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10580 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10600 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10610 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10620 seed maturation protein LEA 4, putative, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10630 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10640 retrotransposon protein, putative, unclassified, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10650 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10660 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10670 hypothetical protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10680 hypothetical protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10690 expressed protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10700 hypothetical protein FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10710 R-interacting factor 1, putative, expressed FN3495-S Chr9 5366001 5856000 0 0 Deletion 489999 LOC_Os09g10720 AP2-associated protein kinase 1, putative, expressed FN3495-S Chr9 5893682 C-A 0 0 Single Base Substitution 0 HET FN3495-S Chr9 643220 C-A 0 0 Single Base Substitution 0 HET