FN3499-S Chr1 14954797 G-A 0 0 Single Base Substitution 0 Homo FN3499-S Chr1 22243003 C-T 0 0 Single Base Substitution 0 HET FN3499-S Chr10 10543218 10543284 0 0 Insertion 66 HET FN3499-S Chr10 14189811 A-T 0 0 Single Base Substitution 0 HET FN3499-S Chr10 7673651 7673652 0 0 Insertion 1 HET FN3499-S Chr10 7831266 Chr2 17726635 0 Translocation 0 LOC_Os02g29790 retrotransposon, putative, centromere-specific, expressed FN3499-S Chr10 7831266 Chr2 17726635 0 Translocation 0 LOC_Os10g14940 retrotransposon, putative, centromere-specific, expressed FN3499-S Chr11 13306791 Chr4 31987972 0 Translocation 0 FN3499-S Chr11 13306791 Chr4 31987972 0 Translocation 0 LOC_Os04g53670 expressed protein FN3499-S Chr11 15573338 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g27050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3499-S Chr11 16307186 T-A 0 0 Single Base Substitution 0 HET FN3499-S Chr11 1903429 T-A 0 0 Single Base Substitution 0 Homo FN3499-S Chr11 24451275 Chr3 12581340 0 Translocation 0 LOC_Os11g40870 expressed protein FN3499-S Chr11 24621641 Chr8 9667766 0 Translocation 0 FN3499-S Chr11 24621641 Chr8 9667766 0 Translocation 0 LOC_Os08g15880 NBS-LRR disease resistance protein, putative, expressed FN3499-S Chr11 29010103 Chr3 31102232 0 Translocation 0 FN3499-S Chr11 3564956 T-C 0 0 Single Base Substitution 0 HET FN3499-S Chr11 5734082 Chr1 10234078 0 Translocation 0 FN3499-S Chr11 8178189 8178190 0 0 Insertion 1 frameshift_variant Homo LOC_Os11g14560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3499-S Chr11 9674140 G-A 0 0 Single Base Substitution 0 HET FN3499-S Chr12 17264478 G-A 0 0 Single Base Substitution 0 HET FN3499-S Chr2 11589556 11589563 0 0 Deletion 7 Homo FN3499-S Chr2 3392717 3392718 0 0 Insertion 1 HET FN3499-S Chr2 34580198 G-C 0 0 Single Base Substitution 0 HET FN3499-S Chr2 6074949 A-T 0 0 Single Base Substitution 0 Homo FN3499-S Chr2 7832011 7832129 0 0 Deletion 118 HET FN3499-S Chr3 10041905 G-T 0 0 Single Base Substitution 0 HET FN3499-S Chr3 21755617 C-T 0 0 Single Base Substitution 0 HET FN3499-S Chr3 8416359 A-G 0 0 Single Base Substitution 0 HET FN3499-S Chr3 9004988 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g16310 retrotransposon protein, putative, LINE subclass, expressed FN3499-S Chr4 18106256 18548948 0 0 Inversion 0 LOC_Os04g30340 wall-associated receptor kinase, putative, expressed FN3499-S Chr4 18106256 18548948 0 0 Inversion 0 LOC_Os04g31030 nitrate-induced NOI protein, expressed FN3499-S Chr4 18106260 Chr2 15962863 0 Translocation 0 LOC_Os02g27130 expressed protein FN3499-S Chr4 18106260 Chr2 15962863 0 Translocation 0 LOC_Os04g30340 wall-associated receptor kinase, putative, expressed FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31030 nitrate-induced NOI protein, expressed FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31040 violaxanthin de-epoxidase, putative, expressed FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31050 expressed protein FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31070 acyl-desaturase, chloroplast precursor, putative, expressed FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31080 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31090 expressed protein FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31110 expressed protein FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31120 OsFBK14 - F-box domain and kelch repeat containing protein, expressed FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31130 retrotransposon protein, putative, unclassified, expressed FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31140 expressed protein FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31150 hypothetical protein FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31160 hypothetical protein FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31170 expressed protein FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31180 retrotransposon protein, putative, unclassified, expressed FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31190 dynamin family protein, putative, expressed FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31200 hypothetical protein FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31210 bile acid sodium symporter family protein, putative, expressed FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31220 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31230 expressed protein FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31240 hydrolase, alpha/beta fold family protein, putative, expressed FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31250 DEFL49 - Defensin and Defensin-like DEFL family, expressed FN3499-S Chr4 18546001 18700000 0 0 Deletion 153999 LOC_Os04g31260 hypothetical protein FN3499-S Chr4 21386815 C-G 0 0 Single Base Substitution 0 Homo FN3499-S Chr4 23541906 23541909 0 0 Deletion 3 Homo FN3499-S Chr4 26891556 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g45440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3499-S Chr4 9667818 C-T 0 0 Single Base Substitution 0 HET FN3499-S Chr5 1851293 Chr4 1112498 0 Translocation 0 FN3499-S Chr5 1851293 Chr4 1112498 0 Translocation 0 LOC_Os04g02850 pentatricopeptide, putative, expressed FN3499-S Chr5 21493063 A-G 0 0 Single Base Substitution 0 HET FN3499-S Chr5 25765823 25765826 0 0 Deletion 3 Homo FN3499-S Chr5 6568742 G-C 0 0 Single Base Substitution 0 HET FN3499-S Chr6 10425054 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os06g17930 NBS-LRR disease resistance protein, putative, expressed FN3499-S Chr6 11968567 G-A 0 0 Single Base Substitution 0 HET FN3499-S Chr6 24324859 T-C 0 0 Single Base Substitution 0 HET FN3499-S Chr6 5543356 5543359 0 0 Insertion 3 HET FN3499-S Chr8 18183008 18183010 0 0 Deletion 2 HET FN3499-S Chr8 18249104 C-T 0 0 Single Base Substitution 0 Homo FN3499-S Chr8 23386247 Chr7 24488804 0 Translocation 0 FN3499-S Chr8 5249389 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g09020 Cupin domain containing protein, expressed FN3499-S Chr8 6973838 6973839 0 0 Deletion 1 HET FN3499-S Chr9 13074142 G-A 0 0 Single Base Substitution 0 HET FN3499-S Chr9 8294683 Chr2 16818162 0 Translocation 0