FN3504-S Chr1 14730745 14730750 0 0 Deletion 5 frameshift_variant HET LOC_Os01g25990 expressed protein FN3504-S Chr1 20892452 T-C 0 0 Single Base Substitution 0 HET FN3504-S Chr10 10690268 10690274 0 0 Deletion 6 disruptive_inframe_deletion Homo LOC_Os10g21080 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3504-S Chr10 20333481 C-T 0 0 Single Base Substitution 0 HET FN3504-S Chr10 6399086 6399087 0 0 Insertion 1 HET FN3504-S Chr10 6592390 6592398 0 0 Deletion 8 HET FN3504-S Chr11 14925446 14925447 0 0 Insertion 1 HET FN3504-S Chr11 15387837 G-A 0 0 Single Base Substitution 0 Homo FN3504-S Chr11 25851500 Chr6 16300080 0 Translocation 0 FN3504-S Chr12 1909145 G-A 0 0 Single Base Substitution 0 HET FN3504-S Chr12 21551763 T-C 0 0 Single Base Substitution 0 HET FN3504-S Chr12 22272343 T-G 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os12g36380 retrotransposon protein, putative, unclassified FN3504-S Chr12 4411035 4518699 0 0 Inversion 0 FN3504-S Chr12 4411918 4518726 0 0 Inversion 0 FN3504-S Chr12 4496162 C-A 0 0 Single Base Substitution 0 HET FN3504-S Chr2 20888121 G-A 0 0 Single Base Substitution 0 HET FN3504-S Chr2 2201745 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g04790 expressed protein FN3504-S Chr2 29919230 C-A 0 0 Single Base Substitution 0 HET FN3504-S Chr2 8255173 A-G 0 0 Single Base Substitution 0 HET FN3504-S Chr3 10251828 C-T 0 0 Single Base Substitution 0 HET FN3504-S Chr3 10366811 A-T 0 0 Single Base Substitution 0 HET FN3504-S Chr3 13406413 C-T 0 0 Single Base Substitution 0 HET FN3504-S Chr3 21653261 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g38970 metal ion binding protein, putative, expressed FN3504-S Chr3 2294012 C-A 0 0 Single Base Substitution 0 HET FN3504-S Chr3 30670734 Chr2 13966354 0 Translocation 0 FN3504-S Chr3 30670734 Chr2 13966354 0 Translocation 0 LOC_Os02g24100 expressed protein FN3504-S Chr3 3268638 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g06510 KIP1, putative, expressed FN3504-S Chr4 2364561 Chr3 25310490 0 Translocation 0 FN3504-S Chr4 4057488 4089228 0 0 Inversion 0 LOC_Os04g07630 hypothetical protein FN3504-S Chr4 4057488 4089228 0 0 Inversion 0 LOC_Os04g07680 retrotransposon protein, putative, unclassified, expressed FN3504-S Chr5 23949027 G-A 0 0 Single Base Substitution 0 HET FN3504-S Chr5 28818821 28818830 0 0 Deletion 9 Homo FN3504-S Chr5 4672482 A-G 0 0 Single Base Substitution 0 HET FN3504-S Chr6 112388 G-A 0 0 Single Base Substitution 0 HET FN3504-S Chr6 24034677 24034684 0 0 Deletion 7 frameshift_variant Homo LOC_Os06g40360 OsFBL30 - F-box domain and LRR containing protein, expressed FN3504-S Chr6 24119678 24119681 0 0 Deletion 3 inframe_deletion Homo LOC_Os06g40480 retrotransposon protein, putative, unclassified, expressed FN3504-S Chr6 5385871 G-C 0 0 Single Base Substitution 0 HET FN3504-S Chr7 10524798 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g17790 retrotransposon protein, putative, Ty3-gypsy subclass FN3504-S Chr7 10524799 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g17790 retrotransposon protein, putative, Ty3-gypsy subclass FN3504-S Chr7 22930813 22930814 0 0 Deletion 1 Homo FN3504-S Chr7 24388627 24388641 0 0 Deletion 14 HET FN3504-S Chr7 2489231 Chr4 6509205 0 Translocation 0 LOC_Os07g05420 anthocyanidin 3-O-glucosyltransferase, putative, expressed FN3504-S Chr7 2489235 Chr4 6506603 0 Translocation 0 LOC_Os07g05420 anthocyanidin 3-O-glucosyltransferase, putative, expressed FN3504-S Chr7 6895376 Chr1 28157002 0 Translocation 0 LOC_Os07g12270 retrotransposon protein, putative, unclassified, expressed FN3504-S Chr7 6895906 Chr1 28157011 0 Translocation 0 LOC_Os07g12270 retrotransposon protein, putative, unclassified, expressed FN3504-S Chr7 8387901 G-T 0 0 Single Base Substitution 0 HET FN3504-S Chr8 11209419 11210414 0 0 Deletion 995 stop_lost&inframe_deletion&splice_region_variant HET LOC_Os08g18780 retrotransposon protein, putative, unclassified, expressed FN3504-S Chr8 14737591 Chr7 5214181 0 Translocation 0 FN3504-S Chr8 17969694 17969743 0 0 Insertion 49 HET FN3504-S Chr8 19350608 G-A 0 0 Single Base Substitution 0 HET FN3504-S Chr8 25009067 A-G 0 0 Single Base Substitution 0 Homo FN3504-S Chr8 270772 C-T 0 0 Single Base Substitution 0 HET FN3504-S Chr8 6533021 T-C 0 0 Single Base Substitution 0 Homo FN3504-S Chr9 16765231 Chr1 32057943 0 Translocation 0 FN3504-S Chr9 16765231 Chr1 32057943 0 Translocation 0 LOC_Os01g55640 seven in absentia protein family protein, putative, expressed FN3504-S Chr9 2823796 2823797 0 0 Insertion 1 HET FN3504-S Chr9 6881544 Chr4 15380380 0 Translocation 0 FN3504-S Chr9 9179939 G-A 0 0 Single Base Substitution 0 Homo