FN3510-S Chr1 12812091 13670713 0 0 Inversion 0 FN3510-S Chr1 12812091 13670713 0 0 Inversion 0 LOC_Os01g24260 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3510-S Chr1 12812100 13670714 0 0 Inversion 0 FN3510-S Chr1 12812100 13670714 0 0 Inversion 0 LOC_Os01g24260 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28720 hypothetical protein FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28730 protein kinase domain containing protein, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28740 transposon protein, putative, unclassified, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28744 retrotransposon protein, putative, unclassified, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28750 retrotransposon, putative, centromere-specific FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28760 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28770 hypothetical protein FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28780 hypothetical protein FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28790 PRAS-rich protein, putative, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28800 retrotransposon protein, putative, unclassified FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28810 expressed protein FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28820 retrotransposon, putative, centromere-specific, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28830 expressed protein FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28840 C4-dicarboxylate transporter/malic acid transport protein, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28850 expressed protein FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28870 retrotransposon protein, putative, unclassified, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28882 retrotransposon protein, putative, unclassified, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28894 retrotransposon protein, putative, unclassified FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28910 retrotransposon protein, putative, unclassified, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28920 retrotransposon, putative, centromere-specific, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28930 expressed protein FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28940 hypothetical protein FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28980 proton-dependent oligopeptide transport, putative, expressed FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g28989 expressed protein FN3510-S Chr1 16081001 16239000 0 0 Deletion 157999 LOC_Os01g29000 retrotransposon, putative, centromere-specific, expressed FN3510-S Chr1 21398681 G-A 0 0 Single Base Substitution 0 HET FN3510-S Chr1 36379336 G-A 0 0 Single Base Substitution 0 HET FN3510-S Chr1 5943189 5943207 0 0 Insertion 18 HET FN3510-S Chr1 8661627 T-A 0 0 Single Base Substitution 0 HET FN3510-S Chr1 9185006 9185018 0 0 Deletion 12 HET FN3510-S Chr10 15309349 15309357 0 0 Deletion 8 HET FN3510-S Chr10 16829641 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g32030 retrotransposon protein, putative, unclassified, expressed FN3510-S Chr11 20286039 A-C 0 0 Single Base Substitution 0 HET FN3510-S Chr11 22046729 22046730 0 0 Deletion 1 frameshift_variant HET LOC_Os11g37340 OsFBX426 - F-box domain containing protein, expressed FN3510-S Chr11 22931782 22931859 0 0 Deletion 77 HET FN3510-S Chr11 8453011 G-A 0 0 Single Base Substitution 0 HET FN3510-S Chr12 13036374 13036394 0 0 Deletion 20 frameshift_variant Homo LOC_Os12g23060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3510-S Chr12 19509480 G-T 0 0 Single Base Substitution 0 Homo FN3510-S Chr12 21982395 21982396 0 0 Insertion 1 HET FN3510-S Chr12 24498041 24498048 0 0 Deletion 7 HET FN3510-S Chr12 24988289 G-A 0 0 Single Base Substitution 0 Homo FN3510-S Chr12 6768413 6768420 0 0 Deletion 7 HET FN3510-S Chr2 17753197 A-G 0 0 Single Base Substitution 0 HET FN3510-S Chr2 22336547 22336557 0 0 Deletion 10 HET FN3510-S Chr2 24835023 G-A 0 0 Single Base Substitution 0 Homo FN3510-S Chr2 33565900 G-C 0 0 Single Base Substitution 0 HET FN3510-S Chr2 7400880 C-A 0 0 Single Base Substitution 0 HET FN3510-S Chr2 8448001 8458000 0 0 Deletion 9999 LOC_Os02g15150 glutelin, putative, expressed FN3510-S Chr2 8448001 8458000 0 0 Deletion 9999 LOC_Os02g15160 OsFBX40 - F-box domain containing protein, expressed FN3510-S Chr3 12886513 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os03g22480 transposon protein, putative, unclassified, expressed FN3510-S Chr3 15104043 Chr2 25382838 0 Translocation 0 FN3510-S Chr3 15104043 Chr2 25382838 0 Translocation 0 LOC_Os02g42200 transcription factor-related, putative, expressed FN3510-S Chr3 17140429 T-C 0 0 Single Base Substitution 0 HET FN3510-S Chr3 18202910 G-C 0 0 Single Base Substitution 0 HET FN3510-S Chr3 23168744 G-A 0 0 Single Base Substitution 0 HET FN3510-S Chr3 25404930 G-A 0 0 Single Base Substitution 0 HET FN3510-S Chr3 8832585 8832591 0 0 Deletion 6 inframe_deletion Homo LOC_Os03g16010 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed FN3510-S Chr4 10792584 C-T 0 0 Single Base Substitution 0 HET FN3510-S Chr4 11848579 G-T 0 0 Single Base Substitution 0 HET FN3510-S Chr4 13662766 G-C 0 0 Single Base Substitution 0 HET FN3510-S Chr4 23527552 23527553 0 0 Deletion 1 frameshift_variant HET LOC_Os04g39520 ZOS4-08 - C2H2 zinc finger protein, expressed FN3510-S Chr4 24601642 A-T 0 0 Single Base Substitution 0 HET FN3510-S Chr4 24654252 C-T 0 0 Single Base Substitution 0 HET FN3510-S Chr4 26254531 26254545 0 0 Deletion 14 HET FN3510-S Chr4 8670143 A-T 0 0 Single Base Substitution 0 HET FN3510-S Chr5 10690697 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g18490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3510-S Chr5 16496226 16690526 0 0 Inversion 0 FN3510-S Chr5 16496226 16690526 0 0 Inversion 0 LOC_Os05g28500 ubiquitin family protein, putative, expressed FN3510-S Chr5 16496229 16690531 0 0 Inversion 0 FN3510-S Chr5 16496229 16690531 0 0 Inversion 0 LOC_Os05g28500 ubiquitin family protein, putative, expressed FN3510-S Chr5 16772805 T-A 0 0 Single Base Substitution 0 HET FN3510-S Chr5 23134497 C-T 0 0 Single Base Substitution 0 HET FN3510-S Chr5 8628326 G-T 0 0 Single Base Substitution 0 HET FN3510-S Chr6 12534863 A-G 0 0 Single Base Substitution 0 HET FN3510-S Chr6 17863015 G-A 0 0 Single Base Substitution 0 HET FN3510-S Chr6 25415469 25415484 0 0 Deletion 15 Homo FN3510-S Chr6 2595858 2595874 0 0 Deletion 16 Homo FN3510-S Chr6 4001238 4001244 0 0 Deletion 6 HET FN3510-S Chr6 5336125 5336127 0 0 Insertion 2 Homo FN3510-S Chr7 10638756 T-A 0 0 Single Base Substitution 0 Homo FN3510-S Chr7 18378972 A-G 0 0 Single Base Substitution 0 HET FN3510-S Chr7 18916916 C-T 0 0 Single Base Substitution 0 HET FN3510-S Chr7 18916917 C-T 0 0 Single Base Substitution 0 HET FN3510-S Chr7 18916918 C-T 0 0 Single Base Substitution 0 HET FN3510-S Chr7 19375826 G-A 0 0 Single Base Substitution 0 HET FN3510-S Chr7 25653601 25653605 0 0 Insertion 4 HET FN3510-S Chr7 25894074 C-T 0 0 Single Base Substitution 0 HET FN3510-S Chr7 28525097 28525102 0 0 Deletion 5 HET FN3510-S Chr7 5523817 5523824 0 0 Deletion 7 Homo FN3510-S Chr8 15541355 15541358 0 0 Deletion 3 Homo FN3510-S Chr8 17501948 C-T 0 0 Single Base Substitution 0 HET FN3510-S Chr8 24878641 Chr1 16080391 0 Translocation 0 FN3510-S Chr8 24878669 Chr1 16235170 0 Translocation 0 FN3510-S Chr8 9290990 G-C 0 0 Single Base Substitution 0 Homo FN3510-S Chr9 3195638 A-T 0 0 Single Base Substitution 0 HET FN3510-S Chr9 6162278 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g11110 retrotransposon protein, putative, unclassified, expressed