FN3517-S Chr1 10696927 C-T 0 0 Single Base Substitution 0 HET FN3517-S Chr1 11488869 11489376 0 0 Deletion 507 disruptive_inframe_deletion HET LOC_Os01g20200 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3517-S Chr1 16285491 16285495 0 0 Deletion 4 frameshift_variant HET LOC_Os01g29090 retrotransposon protein, putative, unclassified FN3517-S Chr1 18337293 A-C 0 0 Single Base Substitution 0 Homo FN3517-S Chr1 191940 G-C 0 0 Single Base Substitution 0 Homo FN3517-S Chr1 23277845 G-C 0 0 Single Base Substitution 0 Homo FN3517-S Chr1 293270 293277 0 0 Deletion 7 frameshift_variant HET LOC_Os01g01580 expressed protein FN3517-S Chr1 38573953 A-G 0 0 Single Base Substitution 0 HET FN3517-S Chr1 7310299 A-G 0 0 Single Base Substitution 0 HET FN3517-S Chr10 14533681 15370720 0 0 Inversion 0 LOC_Os10g28020 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed FN3517-S Chr10 14533681 15370720 0 0 Inversion 0 LOC_Os10g29570 late embryogenesis abundant protein D-34, putative, expressed FN3517-S Chr10 20743550 G-A 0 0 Single Base Substitution 0 HET FN3517-S Chr10 2406213 G-T 0 0 Single Base Substitution 0 HET FN3517-S Chr10 3601587 G-T 0 0 Single Base Substitution 0 HET FN3517-S Chr10 7277012 G-T 0 0 Single Base Substitution 0 Homo FN3517-S Chr11 12876875 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os11g22430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3517-S Chr11 13182313 C-T 0 0 Single Base Substitution 0 Homo FN3517-S Chr11 19401258 C-T 0 0 Single Base Substitution 0 HET FN3517-S Chr11 6097175 G-A 0 0 Single Base Substitution 0 Homo FN3517-S Chr12 10383813 10383814 0 0 Deletion 1 frameshift_variant HET LOC_Os12g18060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3517-S Chr12 13714980 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g24110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3517-S Chr12 14623734 Chr5 12285016 0 Translocation 0 FN3517-S Chr12 22306234 22306240 0 0 Deletion 6 HET FN3517-S Chr12 23184076 Chr8 4009896 0 Translocation 0 LOC_Os12g37760 RGH1A, putative, expressed FN3517-S Chr12 8112667 G-A 0 0 Single Base Substitution 0 HET FN3517-S Chr12 8345717 Chr4 6997594 0 Translocation 0 LOC_Os04g12639 carboxyl-terminal proteinase, putative, expressed FN3517-S Chr12 8345717 Chr4 6997594 0 Translocation 0 LOC_Os12g14610 cysteine-rich receptor-like protein kinase 32 precursor, putative, expressed FN3517-S Chr2 11590335 11590339 0 0 Insertion 4 HET FN3517-S Chr2 15211541 T-C 0 0 Single Base Substitution 0 HET FN3517-S Chr2 25222846 C-A 0 0 Single Base Substitution 0 HET FN3517-S Chr2 9268953 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g16290 transposon protein, putative, Mutator sub-class, expressed FN3517-S Chr3 13362876 13362877 0 0 Deletion 1 frameshift_variant HET LOC_Os03g23110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3517-S Chr3 15988326 15988336 0 0 Deletion 10 HET FN3517-S Chr3 28547526 A-G 0 0 Single Base Substitution 0 Homo FN3517-S Chr3 31074403 G-A 0 0 Single Base Substitution 0 Homo FN3517-S Chr3 33745747 C-A 0 0 Single Base Substitution 0 HET FN3517-S Chr3 4495737 T-A 0 0 Single Base Substitution 0 HET FN3517-S Chr3 9634050 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g17300 TKL_IRAK_CrRLK1L-1.7 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed FN3517-S Chr4 11432482 A-C 0 0 Single Base Substitution 0 Homo FN3517-S Chr4 1224634 1224640 0 0 Deletion 6 Homo FN3517-S Chr4 17297872 Chr3 27525973 0 Translocation 0 LOC_Os03g48330 retrotransposon protein, putative, unclassified, expressed FN3517-S Chr4 17297872 Chr3 27525973 0 Translocation 0 LOC_Os04g29180 retrotransposon protein, putative, unclassified, expressed FN3517-S Chr4 22960340 G-A 0 0 Single Base Substitution 0 HET FN3517-S Chr4 6030433 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os04g11080 retrotransposon protein, putative, unclassified, expressed FN3517-S Chr5 10832188 C-T 0 0 Single Base Substitution 0 HET FN3517-S Chr5 11743402 T-A 0 0 Single Base Substitution 0 HET FN3517-S Chr5 12047001 12061000 0 0 Deletion 13999 LOC_Os05g20520 retrotransposon protein, putative, Ty3-gypsy subclass FN3517-S Chr5 12047001 12061000 0 0 Deletion 13999 LOC_Os05g20530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3517-S Chr5 12047001 12061000 0 0 Deletion 13999 LOC_Os05g20540 expressed protein FN3517-S Chr5 12065001 12097000 0 0 Deletion 31999 LOC_Os05g20560 retrotransposon protein, putative, unclassified, expressed FN3517-S Chr5 12065001 12097000 0 0 Deletion 31999 LOC_Os05g20570 invertase/pectin methylesterase inhibitor family protein, putative, expressed FN3517-S Chr5 12065001 12097000 0 0 Deletion 31999 LOC_Os05g20590 expressed protein FN3517-S Chr5 12065001 12097000 0 0 Deletion 31999 LOC_Os05g20600 retrotransposon, putative, centromere-specific FN3517-S Chr5 12065001 12097000 0 0 Deletion 31999 LOC_Os05g20610 retrotransposon protein, putative, unclassified FN3517-S Chr5 12065001 12097000 0 0 Deletion 31999 LOC_Os05g20620 retrotransposon protein, putative, unclassified, expressed FN3517-S Chr5 779931 C-T 0 0 Single Base Substitution 0 HET FN3517-S Chr5 9266570 9527793 0 0 Inversion 0 LOC_Os05g16360 expressed protein FN3517-S Chr5 9530904 9717904 0 0 Inversion 0 FN3517-S Chr5 9530904 9717904 0 0 Inversion 0 LOC_Os05g17040 retrotransposon protein, putative, unclassified, expressed FN3517-S Chr5 9723239 9723241 0 0 Deletion 2 HET FN3517-S Chr5 9730419 10068599 0 0 Inversion 0 LOC_Os05g17050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3517-S Chr5 9730419 10068599 0 0 Inversion 0 LOC_Os05g17530 retrotransposon protein, putative, unclassified FN3517-S Chr6 11827213 11827214 0 0 Insertion 1 HET FN3517-S Chr6 14036988 G-A 0 0 Single Base Substitution 0 HET FN3517-S Chr6 21488561 G-A 0 0 Single Base Substitution 0 HET FN3517-S Chr6 23833971 C-T 0 0 Single Base Substitution 0 HET FN3517-S Chr6 24180715 C-T 0 0 Single Base Substitution 0 Homo FN3517-S Chr6 7673893 7673907 0 0 Deletion 14 Homo FN3517-S Chr7 14195060 Chr4 13542770 0 Translocation 0 FN3517-S Chr7 15109261 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g26280 retrotransposon protein, putative, unclassified, expressed FN3517-S Chr7 18889321 18889494 0 0 Inversion 0 FN3517-S Chr7 24289012 24289014 0 0 Insertion 2 Homo FN3517-S Chr7 28169912 G-A 0 0 Single Base Substitution 0 Homo FN3517-S Chr7 2973530 2973531 0 0 Insertion 1 HET FN3517-S Chr7 4239704 4246328 0 0 Inversion 0 FN3517-S Chr7 4239704 4246328 0 0 Inversion 0 LOC_Os07g08300 major facilitator superfamily antiporter, putative, expressed FN3517-S Chr7 4239852 4246352 0 0 Inversion 0 FN3517-S Chr7 4239852 4246352 0 0 Inversion 0 LOC_Os07g08300 major facilitator superfamily antiporter, putative, expressed FN3517-S Chr7 4290461 5083422 0 0 Inversion 0 FN3517-S Chr7 4290461 5083422 0 0 Inversion 0 LOC_Os07g09590 bHLH transcription factor, putative, expressed FN3517-S Chr7 4290473 5083426 0 0 Inversion 0 FN3517-S Chr7 4290473 5083426 0 0 Inversion 0 LOC_Os07g09590 bHLH transcription factor, putative, expressed FN3517-S Chr7 5489355 G-A 0 0 Single Base Substitution 0 HET FN3517-S Chr7 8338880 8338882 0 0 Insertion 2 HET FN3517-S Chr7 8592986 T-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os07g14980 retrotransposon protein, putative, unclassified FN3517-S Chr7 8592987 A-T 0 0 Single Base Substitution 0 HET FN3517-S Chr8 14385480 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g23770 retrotransposon protein, putative, unclassified, expressed FN3517-S Chr8 16114190 T-C 0 0 Single Base Substitution 0 HET FN3517-S Chr8 7516616 T-C 0 0 Single Base Substitution 0 HET FN3517-S Chr9 12289512 G-A 0 0 Single Base Substitution 0 HET FN3517-S Chr9 22594118 G-A 0 0 Single Base Substitution 0 Homo FN3517-S Chr9 2334785 2334787 0 0 Deletion 2 frameshift_variant Homo LOC_Os09g04410 retrotransposon, putative, centromere-specific, expressed FN3517-S Chr9 6002510 C-T 0 0 Single Base Substitution 0 HET