FN3524-S Chr1 10399939 G-A 0 0 Single Base Substitution 0 HET FN3524-S Chr1 10399941 T-A 0 0 Single Base Substitution 0 HET FN3524-S Chr1 11751469 C-T 0 0 Single Base Substitution 0 HET FN3524-S Chr1 37498066 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g64610 retrotransposon protein, putative, unclassified, expressed FN3524-S Chr1 8857518 8857520 0 0 Insertion 2 HET FN3524-S Chr1 952067 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g02740 retrotransposon protein, putative, unclassified, expressed FN3524-S Chr10 10409517 10409519 0 0 Deletion 2 Homo FN3524-S Chr10 11785734 12770111 0 0 Inversion 0 FN3524-S Chr10 12255500 12255501 0 0 Deletion 1 Homo FN3524-S Chr10 12523001 12577000 0 0 Deletion 53999 LOC_Os10g24420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3524-S Chr10 12523001 12577000 0 0 Deletion 53999 LOC_Os10g24430 retrotransposon protein, putative, Ty3-gypsy subclass FN3524-S Chr10 12523001 12577000 0 0 Deletion 53999 LOC_Os10g24450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3524-S Chr10 12523001 12577000 0 0 Deletion 53999 LOC_Os10g24460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3524-S Chr10 12523001 12577000 0 0 Deletion 53999 LOC_Os10g24470 retrotransposon, putative, centromere-specific, expressed FN3524-S Chr10 12523001 12577000 0 0 Deletion 53999 LOC_Os10g24480 retrotransposon, putative, centromere-specific, expressed FN3524-S Chr10 12523001 12577000 0 0 Deletion 53999 LOC_Os10g24490 retrotransposon protein, putative, unclassified FN3524-S Chr10 12523001 12577000 0 0 Deletion 53999 LOC_Os10g24500 expressed protein FN3524-S Chr10 12738163 12770110 0 0 Inversion 0 LOC_Os10g24770 retrotransposon protein, putative, unclassified, expressed FN3524-S Chr10 16927488 C-T 0 0 Single Base Substitution 0 Homo FN3524-S Chr10 8135256 C-G 0 0 Single Base Substitution 0 HET FN3524-S Chr11 11508165 Chr8 19974189 0 Translocation 0 LOC_Os08g32220 retrotransposon protein, putative, Ty3-gypsy subclass FN3524-S Chr11 11508165 Chr8 19974189 0 Translocation 0 LOC_Os11g20000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3524-S Chr11 13709698 Chr1 5361945 0 Translocation 0 LOC_Os01g10195 expressed protein FN3524-S Chr11 13709698 Chr1 5361945 0 Translocation 0 LOC_Os11g24120 expressed protein FN3524-S Chr11 1462848 2004606 0 0 Inversion 0 LOC_Os11g03734 alpha-N-arabinofuranosidase A precursor, putative, expressed FN3524-S Chr11 1462848 2004606 0 0 Inversion 0 LOC_Os11g04700 expressed protein FN3524-S Chr11 1462856 2004606 0 0 Inversion 0 LOC_Os11g03734 alpha-N-arabinofuranosidase A precursor, putative, expressed FN3524-S Chr11 1462856 2004606 0 0 Inversion 0 LOC_Os11g04700 expressed protein FN3524-S Chr11 19390588 Chr2 23245301 0 Translocation 0 LOC_Os11g32820 expressed protein FN3524-S Chr11 22018756 A-G 0 0 Single Base Substitution 0 HET FN3524-S Chr11 368917 368918 0 0 Insertion 1 HET FN3524-S Chr11 6946776 T-C 0 0 Single Base Substitution 0 HET FN3524-S Chr11 8087822 G-A 0 0 Single Base Substitution 0 Homo FN3524-S Chr12 10071189 G-T 0 0 Single Base Substitution 0 HET FN3524-S Chr12 13624840 A-G 0 0 Single Base Substitution 0 HET FN3524-S Chr12 16808031 Chr9 4916671 0 Translocation 0 FN3524-S Chr12 18415929 Chr11 11242628 0 Translocation 0 LOC_Os12g30650 retrotransposon protein, putative, Ty3-gypsy subclass FN3524-S Chr12 25745264 T-A 0 0 Single Base Substitution 0 HET FN3524-S Chr12 7125001 7167000 0 0 Deletion 41999 LOC_Os12g12880 expressed protein FN3524-S Chr12 7125001 7167000 0 0 Deletion 41999 LOC_Os12g12900 hypothetical protein FN3524-S Chr12 7125001 7167000 0 0 Deletion 41999 LOC_Os12g12910 retrotransposon protein, putative, unclassified, expressed FN3524-S Chr12 7125001 7167000 0 0 Deletion 41999 LOC_Os12g12920 hypothetical protein FN3524-S Chr12 7125001 7167000 0 0 Deletion 41999 LOC_Os12g12934 peptide transporter PTR3-A, putative, expressed FN3524-S Chr12 9518113 C-A 0 0 Single Base Substitution 0 HET FN3524-S Chr2 14606479 G-A 0 0 Single Base Substitution 0 Homo FN3524-S Chr2 15148528 A-G 0 0 Single Base Substitution 0 HET FN3524-S Chr2 15262017 C-T 0 0 Single Base Substitution 0 HET FN3524-S Chr2 21927307 C-T 0 0 Single Base Substitution 0 Homo FN3524-S Chr3 11884541 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g20949 phospholipid-transporting ATPase, putative, expressed FN3524-S Chr3 20637990 20637991 0 0 Insertion 1 HET FN3524-S Chr3 32050378 32050382 0 0 Deletion 4 Homo FN3524-S Chr3 36360952 36360953 0 0 Deletion 1 frameshift_variant Homo LOC_Os03g64330 aquaporin protein, putative, expressed FN3524-S Chr4 27980408 28100629 0 0 Inversion 0 FN3524-S Chr4 27980419 28100635 0 0 Inversion 0 FN3524-S Chr4 3036752 3212947 0 0 Inversion 0 FN3524-S Chr4 3036752 3212947 0 0 Inversion 0 LOC_Os04g06170 expressed protein FN3524-S Chr4 30697667 T-A 0 0 Single Base Substitution 0 HET FN3524-S Chr4 30851457 G-A 0 0 Single Base Substitution 0 Homo FN3524-S Chr4 31894861 A-G 0 0 Single Base Substitution 0 Homo FN3524-S Chr4 33453799 33453808 0 0 Deletion 9 HET FN3524-S Chr4 7691310 7691322 0 0 Deletion 12 HET FN3524-S Chr4 8587746 8587747 0 0 Deletion 1 HET FN3524-S Chr5 10382097 10382106 0 0 Deletion 9 disruptive_inframe_deletion HET LOC_Os05g18050 retrotransposon protein, putative, unclassified FN3524-S Chr5 10686298 10686299 0 0 Deletion 1 HET FN3524-S Chr5 16439555 16439572 0 0 Deletion 17 Homo FN3524-S Chr5 17078725 Chr4 12974764 0 Translocation 0 FN3524-S Chr5 17078725 Chr4 12974764 0 Translocation 0 LOC_Os04g22880 conserved hypothetical protein FN3524-S Chr5 18525806 C-T 0 0 Single Base Substitution 0 Homo FN3524-S Chr5 19909272 19909277 0 0 Deletion 5 Homo FN3524-S Chr5 22032778 C-T 0 0 Single Base Substitution 0 HET FN3524-S Chr5 2405200 2405201 0 0 Deletion 1 HET FN3524-S Chr5 49552 49554 0 0 Deletion 2 HET FN3524-S Chr6 16046926 16046936 0 0 Insertion 10 HET FN3524-S Chr6 5487850 5487858 0 0 Insertion 8 HET FN3524-S Chr7 24384730 24563737 0 0 Inversion 0 LOC_Os07g40690 NAD dependent epimerase/dehydratase family protein, putative, expressed FN3524-S Chr7 24384730 24563737 0 0 Inversion 0 LOC_Os07g41060 dihydroflavonol-4-reductase, putative, expressed FN3524-S Chr7 27604320 27604323 0 0 Insertion 3 disruptive_inframe_insertion HET LOC_Os07g46260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3524-S Chr7 8810635 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g15270 RNA-binding region RNP-1, putative, expressed FN3524-S Chr7 9453152 T-C 0 0 Single Base Substitution 0 HET FN3524-S Chr8 13074400 G-A 0 0 Single Base Substitution 0 HET FN3524-S Chr8 14202095 Chr3 18188387 0 Translocation 0 FN3524-S Chr8 18077820 Chr5 17234027 0 Translocation 0 LOC_Os08g29490 retrotransposon protein, putative, unclassified, expressed FN3524-S Chr8 18643401 C-T 0 0 Single Base Substitution 0 Homo FN3524-S Chr8 18716274 18717375 0 0 Inversion 0 FN3524-S Chr8 18741391 Chr5 10771550 0 Translocation 0 FN3524-S Chr8 18741391 Chr5 10771550 0 Translocation 0 LOC_Os05g18604 OsSCP28 - Putative Serine Carboxypeptidase homologue, expressed FN3524-S Chr8 8040105 8040112 0 0 Deletion 7 frameshift_variant HET LOC_Os08g13520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3524-S Chr8 8364104 8364107 0 0 Deletion 3 HET FN3524-S Chr8 9744489 9744490 0 0 Deletion 1 HET FN3524-S Chr9 14139870 G-A 0 0 Single Base Substitution 0 HET FN3524-S Chr9 2505683 2505687 0 0 Deletion 4 HET FN3524-S Chr9 267776 A-G 0 0 Single Base Substitution 0 HET FN3524-S Chr9 5298719 5298720 0 0 Insertion 1 HET