FN3528-S Chr1 10740578 G-A 0 0 Single Base Substitution 0 HET FN3528-S Chr1 10740579 C-A 0 0 Single Base Substitution 0 HET FN3528-S Chr1 19038879 A-T 0 0 Single Base Substitution 0 Homo FN3528-S Chr1 22865026 22865049 0 0 Deletion 23 HET FN3528-S Chr1 28135120 28135124 0 0 Insertion 4 HET FN3528-S Chr1 28194448 C-T 0 0 Single Base Substitution 0 HET FN3528-S Chr1 28274337 T-A 0 0 Single Base Substitution 0 HET FN3528-S Chr1 30100439 30100440 0 0 Insertion 1 Homo FN3528-S Chr1 4973339 A-T 0 0 Single Base Substitution 0 HET FN3528-S Chr1 7414694 7414695 0 0 Insertion 1 HET FN3528-S Chr1 99719 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g01210 retrotransposon protein, putative, unclassified FN3528-S Chr1 99720 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g01210 retrotransposon protein, putative, unclassified FN3528-S Chr10 12931596 12931610 0 0 Deletion 14 HET FN3528-S Chr10 14838988 A-G 0 0 Single Base Substitution 0 HET FN3528-S Chr10 3461799 3461800 0 0 Insertion 1 Homo FN3528-S Chr10 6767049 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g12160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3528-S Chr11 10115863 T-C 0 0 Single Base Substitution 0 HET FN3528-S Chr11 14278821 C-T 0 0 Single Base Substitution 0 HET FN3528-S Chr11 18526552 A-T 0 0 Single Base Substitution 0 HET FN3528-S Chr11 3660264 3660274 0 0 Deletion 10 frameshift_variant HET LOC_Os11g07260 expressed protein FN3528-S Chr11 4783877 4783890 0 0 Deletion 13 HET FN3528-S Chr11 6663062 6663712 0 0 Inversion 0 LOC_Os11g11990 NB-ARC domain containing protein, expressed FN3528-S Chr12 10949861 A-G 0 0 Single Base Substitution 0 HET FN3528-S Chr12 11330961 C-T 0 0 Single Base Substitution 0 HET FN3528-S Chr12 11657262 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g20040 retrotransposon, putative, centromere-specific, expressed FN3528-S Chr12 15236001 15289000 0 0 Deletion 52999 LOC_Os12g26150 retrotransposon protein, putative, unclassified, expressed FN3528-S Chr12 15236001 15289000 0 0 Deletion 52999 LOC_Os12g26160 expressed protein FN3528-S Chr12 15236001 15289000 0 0 Deletion 52999 LOC_Os12g26170 expressed protein FN3528-S Chr12 15236001 15289000 0 0 Deletion 52999 LOC_Os12g26180 retrotransposon protein, putative, unclassified, expressed FN3528-S Chr12 15236001 15289000 0 0 Deletion 52999 LOC_Os12g26190 retrotransposon protein, putative, unclassified, expressed FN3528-S Chr12 15236001 15289000 0 0 Deletion 52999 LOC_Os12g26204 transposon protein, putative, unclassified, expressed FN3528-S Chr12 15236001 15289000 0 0 Deletion 52999 LOC_Os12g26220 expressed protein FN3528-S Chr12 15284223 Chr8 5560415 0 Translocation 0 FN3528-S Chr12 18043040 C-A 0 0 Single Base Substitution 0 HET FN3528-S Chr12 3259984 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g06690 retrotransposon protein, putative, unclassified, expressed FN3528-S Chr12 3478755 G-T 0 0 Single Base Substitution 0 HET FN3528-S Chr2 12599628 12600084 0 0 Inversion 0 FN3528-S Chr2 14903683 14903685 0 0 Deletion 2 HET FN3528-S Chr2 18955794 G-T 0 0 Single Base Substitution 0 HET FN3528-S Chr2 19720733 A-G 0 0 Single Base Substitution 0 Homo FN3528-S Chr2 20526845 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g34300 transposon protein, putative, unclassified, expressed FN3528-S Chr2 21245165 C-T 0 0 Single Base Substitution 0 HET FN3528-S Chr2 23120132 23120133 0 0 Deletion 1 frameshift_variant HET LOC_Os02g38220 eukaryotic translation initiation factor 4B, putative, expressed FN3528-S Chr2 27914044 G-A 0 0 Single Base Substitution 0 HET FN3528-S Chr2 29614805 29614808 0 0 Deletion 3 HET FN3528-S Chr2 32493623 32493627 0 0 Deletion 4 Homo FN3528-S Chr2 33718078 33718268 0 0 Inversion 0 LOC_Os02g55030 hydrolase, NUDIX family, domain containing protein, expressed FN3528-S Chr2 35126040 35126180 0 0 Inversion 0 LOC_Os02g57340 tetratricopeptide-like helical, putative, expressed FN3528-S Chr2 9396043 T-C 0 0 Single Base Substitution 0 HET FN3528-S Chr3 103927 103929 0 0 Insertion 2 HET FN3528-S Chr3 1450035 1450036 0 0 Deletion 1 HET FN3528-S Chr3 14709295 G-A 0 0 Single Base Substitution 0 HET FN3528-S Chr3 19144992 T-G 0 0 Single Base Substitution 0 HET FN3528-S Chr3 22749347 C-T 0 0 Single Base Substitution 0 HET FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g01950 transposon protein, putative, unclassified, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g01960 expressed protein FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g01970 THO complex subunit 1, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g01980 KIP1, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g01990 lysM domain containing protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02010 DNA methyltransferase protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02020 stress responsive A/B Barrel domain containing protein, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02030 folylpolyglutamate synthase, mitochondrial precursor, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02040 remorin, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02050 LTPL151 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02060 hypothetical protein FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02070 heavy-metal-associated domain-containing protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02080 expressed protein FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02090 expressed protein FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02100 valyl-tRNA synthetase, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02110 WD domain, G-beta repeat domain containing protein, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02120 transposon protein, putative, Mariner sub-class, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02130 hypothetical protein FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02140 transposon protein, putative, unclassified, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02150 adapitin protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02160 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02170 transmembrane and coiled-coil domain-containing protein 4, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02180 cytochrome P450, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02190 protein kinase domain containing protein, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02200 thymidine kinase, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02210 expressed protein FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02230 expressed protein FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02240 AT-GTL1, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02255 expressed protein FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02260 DnaK family protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02270 expressed protein FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02280 DUF584 domain containing protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02290 kinesin motor domain containing protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02300 expressed protein FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02310 RNA binding protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02320 STE_PAK_Ste20_STLK.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02330 AAA-type ATPase family protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02340 expressed protein FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02350 transposon protein, putative, unclassified, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02360 retrotransposon protein, putative, unclassified, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02370 transposon protein, putative, unclassified, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02380 major facilitator superfamily domain-containing protein 5, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02390 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02400 plastocyanin-like domain containing protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02410 GHMP kinases ATP-binding protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02420 KH domain containing protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02430 PPR repeat domain containing protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02440 WD repeat-containing protein 44, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02450 pyridoxamine 5'-phosphate oxidase family protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02460 retinol dehydrogenase, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02470 expressed protein FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02480 inner membrane protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02500 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02514 hydrolase, alpha/beta fold family protein, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02530 OsRhmbd7 - Putative Rhomboid homologue, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02540 proteasome subunit, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02544 expressed protein FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02550 OsFBX76 - F-box domain containing protein, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02560 cyclin-like F-box, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02570 dihydrodipicolinate reductase, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02580 armadillo, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02590 peroxisomal biogenesis factor 11, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02600 riboflavin biosynthesis protein ribD, putative, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02610 glycosyl hydrolases family 16 protein, protein, expressed FN3528-S Chr3 597001 967000 0 0 Deletion 369999 LOC_Os03g02620 expressed protein FN3528-S Chr3 8169104 C-A 0 0 Single Base Substitution 0 HET FN3528-S Chr3 8169105 G-A 0 0 Single Base Substitution 0 HET FN3528-S Chr4 11114815 C-G 0 0 Single Base Substitution 0 HET FN3528-S Chr4 13079035 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g23030 retrotransposon protein, putative, unclassified, expressed FN3528-S Chr4 1555240 G-A 0 0 Single Base Substitution 0 HET FN3528-S Chr4 2361885 C-A 0 0 Single Base Substitution 0 HET FN3528-S Chr4 28707850 A-T 0 0 Single Base Substitution 0 HET FN3528-S Chr4 7279312 G-A 0 0 Single Base Substitution 0 Homo FN3528-S Chr4 7738367 7738369 0 0 Deletion 2 HET FN3528-S Chr5 10013871 C-T 0 0 Single Base Substitution 0 HET FN3528-S Chr5 11912692 G-C 0 0 Single Base Substitution 0 HET FN3528-S Chr5 12079573 C-T 0 0 Single Base Substitution 0 HET FN3528-S Chr5 15383830 A-C 0 0 Single Base Substitution 0 Homo FN3528-S Chr5 2608421 2608422 0 0 Deletion 1 HET FN3528-S Chr5 27549571 C-A 0 0 Single Base Substitution 0 HET FN3528-S Chr5 29886601 T-A 0 0 Single Base Substitution 0 HET FN3528-S Chr5 5657309 Chr3 4142080 0 Translocation 0 FN3528-S Chr5 5657309 Chr3 4142080 0 Translocation 0 LOC_Os03g08110 hydrolase protein, putative, expressed FN3528-S Chr5 9507976 9507990 0 0 Deletion 14 frameshift_variant HET LOC_Os05g16720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3528-S Chr6 11460097 C-A 0 0 Single Base Substitution 0 HET FN3528-S Chr6 12574917 C-T 0 0 Single Base Substitution 0 HET FN3528-S Chr6 24301677 24301877 0 0 Inversion 0 FN3528-S Chr6 27535646 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g45520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3528-S Chr6 29723571 29723573 0 0 Insertion 2 HET FN3528-S Chr6 29862591 C-T 0 0 Single Base Substitution 0 Homo FN3528-S Chr6 30063018 30063021 0 0 Deletion 3 HET FN3528-S Chr6 7373029 7373036 0 0 Deletion 7 HET FN3528-S Chr6 9271842 C-G 0 0 Single Base Substitution 0 Homo FN3528-S Chr6 9473710 Chr3 16475641 0 Translocation 0 FN3528-S Chr6 9473710 Chr3 16475641 0 Translocation 0 LOC_Os03g29020 transposon protein, putative, CACTA, En/Spm sub-class FN3528-S Chr7 10104806 G-C 0 0 Single Base Substitution 0 Homo FN3528-S Chr7 15959729 16928925 0 0 Inversion 0 FN3528-S Chr7 15959731 16928931 0 0 Inversion 0 FN3528-S Chr7 16411541 T-A 0 0 Single Base Substitution 0 Homo FN3528-S Chr7 17189874 17189876 0 0 Deletion 2 HET FN3528-S Chr7 892722 G-T 0 0 Single Base Substitution 0 HET FN3528-S Chr7 892723 A-T 0 0 Single Base Substitution 0 HET FN3528-S Chr8 15224406 15224417 0 0 Deletion 11 Homo FN3528-S Chr8 17421341 17421354 0 0 Deletion 13 Homo FN3528-S Chr8 22407995 22408496 0 0 Inversion 0 FN3528-S Chr8 22407995 22408496 0 0 Inversion 0 LOC_Os08g35570 expressed protein FN3528-S Chr8 2355477 Chr1 19809220 0 Translocation 0 FN3528-S Chr8 25081573 C-T 0 0 Single Base Substitution 0 HET FN3528-S Chr8 5086551 G-A 0 0 Single Base Substitution 0 SPLICE_SITE_ACCEPTOR HET LOC_Os08g08770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3528-S Chr8 8832160 T-A 0 0 Single Base Substitution 0 HET FN3528-S Chr9 10050985 10050987 0 0 Deletion 2 HET FN3528-S Chr9 10142985 10142986 0 0 Deletion 1 HET FN3528-S Chr9 13054395 T-G 0 0 Single Base Substitution 0 Homo FN3528-S Chr9 13155112 C-A 0 0 Single Base Substitution 0 HET FN3528-S Chr9 21729836 21729970 0 0 Inversion 0 LOC_Os09g37700 proteophosphoglycan ppg4, putative, expressed FN3528-S Chr9 4091276 C-T 0 0 Single Base Substitution 0 Homo