FN3540-S Chr1 14652280 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g25839 retrotransposon protein, putative, Ty1-copia subclass FN3540-S Chr1 17894348 T-C 0 0 Single Base Substitution 0 Homo FN3540-S Chr1 20451151 G-C 0 0 Single Base Substitution 0 Homo FN3540-S Chr1 313757 C-T 0 0 Single Base Substitution 0 HET FN3540-S Chr1 35803612 35803625 0 0 Deletion 13 HET FN3540-S Chr10 3216749 C-T 0 0 Single Base Substitution 0 HET FN3540-S Chr11 12994104 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g22580 retrotransposon protein, putative, unclassified, expressed FN3540-S Chr11 16155475 16155491 0 0 Deletion 16 HET FN3540-S Chr11 20195144 G-A 0 0 Single Base Substitution 0 Homo FN3540-S Chr11 22130893 22130923 0 0 Insertion 30 HET FN3540-S Chr11 2725572 2725573 0 0 Insertion 1 HET FN3540-S Chr11 6475659 6475667 0 0 Deletion 8 HET FN3540-S Chr12 10803927 T-A 0 0 Single Base Substitution 0 HET FN3540-S Chr12 11898597 11898598 0 0 Deletion 1 HET FN3540-S Chr12 657398 657407 0 0 Deletion 9 Homo FN3540-S Chr2 14886328 14886338 0 0 Deletion 10 frameshift_variant Homo LOC_Os02g25490 retrotransposon protein, putative, Ty1-copia subclass FN3540-S Chr2 14890120 C-T 0 0 Single Base Substitution 0 Homo FN3540-S Chr2 25068168 T-G 0 0 Single Base Substitution 0 HET FN3540-S Chr2 29995292 29995293 0 0 Deletion 1 HET FN3540-S Chr2 86063 86066 0 0 Deletion 3 Homo FN3540-S Chr3 13898051 C-T 0 0 Single Base Substitution 0 HET FN3540-S Chr3 23285144 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g41920 expressed protein FN3540-S Chr3 24947817 24947821 0 0 Deletion 4 HET FN3540-S Chr3 31972004 G-T 0 0 Single Base Substitution 0 HET FN3540-S Chr3 5999250 T-A 0 0 Single Base Substitution 0 HET FN3540-S Chr4 26887272 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g45440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45650 expressed protein FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45665 hypothetical protein FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45670 src homology-3 domain protein 3, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45690 B-box zinc finger family protein, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45700 COBRA, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45710 expressed protein FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45720 aldehyde dehydrogenase, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45730 protein kinase domain containing protein, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45740 hypothetical protein FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45750 expressed protein FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45760 retrotransposon protein, putative, unclassified FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45770 retrotransposon protein, putative, unclassified, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45780 retrotransposon protein, putative, unclassified, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45790 expressed protein FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45800 diacylglycerol kinase, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45810 homeobox associated leucine zipper, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45821 expressed protein FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45834 DUF584 domain containing protein, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45850 transposon protein, putative, unclassified, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45860 transposon protein, putative, unclassified, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45870 expressed protein FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45880 expressed protein FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45890 retrotransposon protein, putative, unclassified, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45900 transposon protein, putative, unclassified, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45910 placental protein 11 precursor, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45920 protein kinase domain containing protein, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45930 RNA recognition motif containing protein, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45940 transcription factor like protein, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45950 amino acid permease family protein, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45960 OsSub42 - Putative Subtilisin homologue, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45970 glutamate dehydrogenase protein, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45980 glycine-rich cell wall protein, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g45990 histone-lysine N-methyltransferase, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g46000 cyclin, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g46010 PPR repeat domain containing protein, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g46020 GATA zinc finger domain containing protein, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g46030 expressed protein FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g46040 hypothetical protein FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g46050 Alg9-like mannosyltransferase protein, putative, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g46060 WRKY36, expressed FN3540-S Chr4 26998001 27309000 0 0 Deletion 310999 LOC_Os04g46079 ELMO/CED-12 family protein, putative, expressed FN3540-S Chr5 2429594 2429595 0 0 Insertion 1 frameshift_variant HET LOC_Os05g05000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3540-S Chr5 25731407 C-T 0 0 Single Base Substitution 0 Homo FN3540-S Chr5 28489189 T-A 0 0 Single Base Substitution 0 HET FN3540-S Chr5 8129612 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g14420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3540-S Chr6 14023792 14023799 0 0 Deletion 7 Homo FN3540-S Chr6 15005547 C-T 0 0 Single Base Substitution 0 Homo FN3540-S Chr6 17296289 T-A 0 0 Single Base Substitution 0 Homo FN3540-S Chr6 28769077 T-C 0 0 Single Base Substitution 0 HET FN3540-S Chr6 3751694 T-A 0 0 Single Base Substitution 0 HET FN3540-S Chr6 3751695 G-A 0 0 Single Base Substitution 0 HET FN3540-S Chr7 14390183 14390185 0 0 Deletion 2 Homo FN3540-S Chr7 1812890 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g04190 receptor protein kinase CLAVATA1 precursor, putative, expressed FN3540-S Chr7 27255463 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g45650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3540-S Chr8 19513012 G-T 0 0 Single Base Substitution 0 Homo FN3540-S Chr8 19513013 C-T 0 0 Single Base Substitution 0 Homo FN3540-S Chr8 6393009 C-T 0 0 Single Base Substitution 0 HET FN3540-S Chr9 11649636 Chr4 18885957 0 Translocation 0 FN3540-S Chr9 13641628 13641635 0 0 Deletion 7 Homo