FN3542-S Chr1 11317001 11353000 0 0 Deletion 35999 LOC_Os01g19940 expressed protein FN3542-S Chr1 11317001 11353000 0 0 Deletion 35999 LOC_Os01g19950 expressed protein FN3542-S Chr1 11317001 11353000 0 0 Deletion 35999 LOC_Os01g19960 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3542-S Chr1 11317001 11353000 0 0 Deletion 35999 LOC_Os01g19970 MYB family transcription factor, putative, expressed FN3542-S Chr1 11317978 11734439 0 0 Inversion 0 LOC_Os01g19940 expressed protein FN3542-S Chr1 11352896 11734442 0 0 Inversion 0 LOC_Os01g19970 MYB family transcription factor, putative, expressed FN3542-S Chr1 26987284 26987286 0 0 Deletion 2 HET FN3542-S Chr1 6397592 6397593 0 0 Deletion 1 HET FN3542-S Chr1 9965131 A-T 0 0 Single Base Substitution 0 HET FN3542-S Chr10 12580401 Chr8 14922478 0 Translocation 0 FN3542-S Chr10 15244173 15244174 0 0 Deletion 1 Homo FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06610 expressed protein FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06620 hypothetical protein FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06630 peptidyl-prolyl cis-trans isomerase, putative, expressed FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06640 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06650 transposon protein, putative, CACTA, En/Spm sub-class FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06670 U-box protein, putative, expressed FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06680 expressed protein FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06690 expressed protein FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06700 OsFBX375 - F-box domain containing protein, expressed FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06710 amidase, putative, expressed FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06720 aldose 1-epimerase, putative, expressed FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06730 transposon protein, putative, unclassified, expressed FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06740 receptor-like protein kinase precursor, putative, expressed FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06760 receptor-like protein kinase precursor, putative, expressed FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06770 expressed protein FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06780 protein kinase domain containing protein, expressed FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06790 expressed protein FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06800 cyclin-dependent kinase G-2, putative, expressed FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06810 expressed protein FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3542-S Chr10 3424001 3564000 0 0 Deletion 139999 LOC_Os10g06830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08520 hypothetical protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08530 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08540 cytochrome P450, putative, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08550 enolase, putative, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08560 retrotransposon protein, putative, Ty3-gypsy subclass FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08570 RNA recognition motif family protein, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08580 FAD binding domain of DNA photolyase domain containing protein, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08590 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08599 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08610 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08620 chalcone and stilbene synthases, putative, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08630 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08640 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08670 chalcone synthase, putative, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08680 conserved hypothetical protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08690 retrotransposon protein, putative, unclassified, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08696 retrotransposon protein, putative, Ty3-gypsy subclass FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08702 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08710 chalcone synthase, putative, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08720 hypothetical protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08730 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08750 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08754 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08760 hypothetical protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08780 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08790 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08800 retrotransposon protein, putative, Ty3-gypsy subclass FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08810 retrotransposon protein, putative, Ty3-gypsy subclass FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08830 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08840 hydrolase, alpha/beta fold family domain containing protein, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08850 nodulin, putative, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08879 nucleotide-sensitive chloride conductance regulator containing protein, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08910 retrotransposon protein, putative, unclassified, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08920 retrotransposon protein, putative, unclassified, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08930 S10/S20 domain containing ribosomal protein, putative, expressed FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08940 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08950 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08960 expressed protein FN3542-S Chr10 4617001 4851000 0 0 Deletion 233999 LOC_Os10g08970 transposon protein, putative, unclassified, expressed FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09290 expressed protein FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09320 retrotransposon protein, putative, unclassified FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09330 hypothetical protein FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09340 expressed protein FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09350 retrotransposon protein, putative, unclassified, expressed FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09360 SAM dependent carboxyl methyltransferase family protein, putative, expressed FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09370 retrotransposon protein, putative, unclassified, expressed FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09390 retrotransposon protein, putative, Ty3-gypsy subclass FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09410 retrotransposon protein, putative, Ty3-gypsy subclass FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3542-S Chr10 5027001 5094000 0 0 Deletion 66999 LOC_Os10g09440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09529 retrotransposon protein, putative, unclassified, expressed FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09550 OsWAK106 - OsWAK receptor-like protein kinase, expressed FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09560 expressed protein FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09570 OsWAK107 - OsWAK receptor-like protein OsWAK-RLP, expressed FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09590 expressed protein FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09600 transposon protein, putative, unclassified, expressed FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09610 retrotransposon protein, putative, unclassified, expressed FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09620 OsWAK108 - OsWAK receptor-like protein kinase, expressed FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09630 retrotransposon protein, putative, unclassified FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09640 retrotransposon, putative, centromere-specific FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09650 retrotransposon, putative, centromere-specific, expressed FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09660 retrotransposon protein, putative, unclassified, expressed FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09670 expressed protein FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09680 expressed protein FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09684 expressed protein FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09690 OsWAK109 - OsWAK receptor-like protein kinase, expressed FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09700 OsWAK110 - OsWAK receptor-like protein kinase, expressed FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09710 auxin-induced protein 5NG4, putative, expressed FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09740 expressed protein FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09750 expressed protein FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09760 expressed protein FN3542-S Chr10 5135001 5289000 0 0 Deletion 153999 LOC_Os10g09770 expressed protein FN3542-S Chr11 13388055 C-T 0 0 Single Base Substitution 0 HET FN3542-S Chr11 22733859 22733909 0 0 Insertion 50 HET FN3542-S Chr11 23797110 23797113 0 0 Deletion 3 HET FN3542-S Chr11 26285179 Chr2 10494306 0 Translocation 0 LOC_Os02g18070 NB-ARC domain containing protein, expressed FN3542-S Chr11 26285179 Chr2 10494306 0 Translocation 0 LOC_Os11g43550 OsGrx_C14 - glutaredoxin subgroup III, expressed FN3542-S Chr11 27705538 27795818 0 0 Inversion 0 LOC_Os11g45790 NB-ARC domain containing protein, expressed FN3542-S Chr11 27705538 27795818 0 0 Inversion 0 LOC_Os11g45930 NBS-LRR type disease resistance protein, putative, expressed FN3542-S Chr11 3428468 Chr9 10912591 0 Translocation 0 LOC_Os11g06934 expressed protein FN3542-S Chr11 4403635 4403640 0 0 Deletion 5 HET FN3542-S Chr12 14196377 T-C 0 0 Single Base Substitution 0 HET FN3542-S Chr12 2543637 2543646 0 0 Deletion 9 Homo FN3542-S Chr2 35101604 A-C 0 0 Single Base Substitution 0 Homo FN3542-S Chr2 35154304 T-C 0 0 Single Base Substitution 0 Homo FN3542-S Chr2 6346038 C-A 0 0 Single Base Substitution 0 Homo FN3542-S Chr2 6346039 C-A 0 0 Single Base Substitution 0 Homo FN3542-S Chr2 6415872 A-T 0 0 Single Base Substitution 0 Homo FN3542-S Chr2 6415873 C-T 0 0 Single Base Substitution 0 Homo FN3542-S Chr3 22195886 G-A 0 0 Single Base Substitution 0 HET FN3542-S Chr3 23006070 T-C 0 0 Single Base Substitution 0 HET FN3542-S Chr4 11200415 C-T 0 0 Single Base Substitution 0 HET FN3542-S Chr4 20301789 20301790 0 0 Deletion 1 HET FN3542-S Chr4 25227863 C-T 0 0 Single Base Substitution 0 HET FN3542-S Chr4 29635199 Chr1 38797770 0 Translocation 0 FN3542-S Chr4 30570864 30570868 0 0 Deletion 4 frameshift_variant&splice_acceptor_variant&splice_region_variant&intron_variant Homo LOC_Os04g51600 expressed protein FN3542-S Chr4 5642611 T-A 0 0 Single Base Substitution 0 Homo FN3542-S Chr4 703349 703361 0 0 Insertion 12 HET FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13130 hypothetical protein FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13140 vignain precursor, putative, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13150 OsFBX125 - F-box domain containing protein, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13160 OsFBD9 - F-box and FBD domain containing protein, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13170 OsFBD10 - F-box and FBD domain containing protein, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13180 retrotransposon protein, putative, unclassified, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13190 expressed protein FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13200 expressed protein FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13210 multidrug resistance-associated protein, putative, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13220 ABC transporter family protein, putative, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13230 expressed protein FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13240 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13250 retrotransposon protein, putative, unclassified, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13260 expressed protein FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13280 expressed protein FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13290 retrotransposon protein, putative, unclassified, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13300 hypothetical protein FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13310 retrotransposon protein, putative, unclassified, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13320 retrotransposon protein, putative, unclassified, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13330 retrotransposon protein, putative, unclassified FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13340 retrotransposon protein, putative, unclassified FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13350 retrotransposon protein, putative, unclassified, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13364 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13380 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3542-S Chr4 7243001 7451000 0 0 Deletion 207999 LOC_Os04g13390 retrotransposon protein, putative, unclassified FN3542-S Chr5 3045286 T-C 0 0 Single Base Substitution 0 HET FN3542-S Chr5 4594945 C-T 0 0 Single Base Substitution 0 HET FN3542-S Chr5 7552571 A-G 0 0 Single Base Substitution 0 HET FN3542-S Chr6 16047129 16047198 0 0 Insertion 69 HET FN3542-S Chr6 23447455 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g39480 SPOC domain containing protein, putative, expressed FN3542-S Chr6 24892635 24892649 0 0 Deletion 14 Homo FN3542-S Chr6 5868075 G-A 0 0 Single Base Substitution 0 Homo FN3542-S Chr6 7521744 Chr3 25342952 0 Translocation 0 FN3542-S Chr6 7521744 Chr3 25342952 0 Translocation 0 LOC_Os03g44900 CCR4-NOT transcription factor, putative, expressed FN3542-S Chr6 9172724 T-C 0 0 Single Base Substitution 0 Homo FN3542-S Chr8 18661180 T-C 0 0 Single Base Substitution 0 Homo FN3542-S Chr8 20398983 G-A 0 0 Single Base Substitution 0 HET FN3542-S Chr8 2795062 T-A 0 0 Single Base Substitution 0 HET FN3542-S Chr8 7261310 C-A 0 0 Single Base Substitution 0 HET FN3542-S Chr9 10796996 C-T 0 0 Single Base Substitution 0 HET