FN3555-S Chr1 31467218 C-T 0 0 Single Base Substitution 0 HET FN3555-S Chr1 36840827 36840829 0 0 Deletion 2 frameshift_variant HET LOC_Os01g63540 cytochrome P450, putative, expressed FN3555-S Chr1 39189657 39189660 0 0 Deletion 3 HET FN3555-S Chr10 18345193 Chr3 19836123 0 Translocation 0 LOC_Os03g35788 retrotransposon protein, putative, unclassified, expressed FN3555-S Chr10 18345193 Chr3 19836123 0 Translocation 0 LOC_Os10g34400 expressed protein FN3555-S Chr10 18360383 Chr3 19836111 0 Translocation 0 FN3555-S Chr10 18360383 Chr3 19836111 0 Translocation 0 LOC_Os03g35788 retrotransposon protein, putative, unclassified, expressed FN3555-S Chr10 18360408 Chr4 23051272 0 Translocation 0 FN3555-S Chr10 2500273 G-A 0 0 Single Base Substitution 0 HET FN3555-S Chr10 3877374 T-A 0 0 Single Base Substitution 0 HET FN3555-S Chr10 7133929 G-A 0 0 Single Base Substitution 0 HET FN3555-S Chr10 9293701 G-C 0 0 Single Base Substitution 0 HET FN3555-S Chr11 12833650 Chr5 4754789 0 Translocation 0 FN3555-S Chr11 12834238 Chr5 4754764 0 Translocation 0 FN3555-S Chr11 20677631 T-G 0 0 Single Base Substitution 0 HET FN3555-S Chr11 21101144 C-T 0 0 Single Base Substitution 0 HET FN3555-S Chr11 26113599 A-T 0 0 Single Base Substitution 0 Homo FN3555-S Chr11 3160972 T-A 0 0 Single Base Substitution 0 Homo FN3555-S Chr11 9785251 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os11g17570 transposon protein, putative, unclassified FN3555-S Chr12 17332918 17332921 0 0 Deletion 3 Homo FN3555-S Chr2 11167251 T-A 0 0 Single Base Substitution 0 HET FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g19890 stripe rust resistance protein Yr10, putative, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g19900 expressed protein FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g19924 aminotransferase, classes I and II, domain containing protein, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g19950 expressed protein FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g19960 transposon protein, putative, unclassified, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g19970 aminotransferase, classes I and II, domain containing protein, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g19980 expressed protein FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g19990 reticulon domain containing protein, putative, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20000 expressed protein FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20010 retrotransposon protein, putative, LINE subclass, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20040 loricrin, putative, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20060 expressed protein FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20070 retrotransposon protein, putative, unclassified, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20080 retrotransposon protein, putative, unclassified FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20090 retrotransposon protein, putative, unclassified FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20130 DEFL72 - Defensin and Defensin-like DEFL family FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20140 protein kinase domain containing protein, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20150 expressed protein FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20160 PPR repeat domain containing protein, putative, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20170 drought induced 19 protein, putative, expressed FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20180 hypothetical protein FN3555-S Chr2 11700001 11897000 0 0 Deletion 196999 LOC_Os02g20190 Leucine Rich Repeat family protein, expressed FN3555-S Chr2 15438294 A-C 0 0 Single Base Substitution 0 Homo FN3555-S Chr2 24780058 G-C 0 0 Single Base Substitution 0 HET FN3555-S Chr2 3847445 T-C 0 0 Single Base Substitution 0 Homo FN3555-S Chr3 10645047 T-A 0 0 Single Base Substitution 0 Homo FN3555-S Chr3 27046998 27047000 0 0 Deletion 2 frameshift_variant HET LOC_Os03g47720 ankyrin, putative, expressed FN3555-S Chr3 3247750 3247755 0 0 Deletion 5 Homo FN3555-S Chr4 12756645 12756648 0 0 Deletion 3 Homo FN3555-S Chr4 24390688 24390689 0 0 Deletion 1 frameshift_variant Homo LOC_Os04g41120 pentatricopeptide, putative, expressed FN3555-S Chr4 258681 C-T 0 0 Single Base Substitution 0 HET FN3555-S Chr4 3083424 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g05950 expressed protein FN3555-S Chr4 3167959 4157205 0 0 Inversion 0 LOC_Os04g06100 transposon protein, putative, CACTA, En/Spm sub-class FN3555-S Chr4 3167959 4157205 0 0 Inversion 0 LOC_Os04g07770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3555-S Chr4 3167969 4155597 0 0 Inversion 0 LOC_Os04g06100 transposon protein, putative, CACTA, En/Spm sub-class FN3555-S Chr5 1582214 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g03650 retrotransposon protein, putative, unclassified, expressed FN3555-S Chr5 22560122 T-C 0 0 Single Base Substitution 0 Homo FN3555-S Chr5 2494267 C-A 0 0 Single Base Substitution 0 Homo FN3555-S Chr5 5603717 5603718 0 0 Deletion 1 frameshift_variant Homo LOC_Os05g10270 expressed protein FN3555-S Chr6 19283438 Chr1 17779578 0 Translocation 0 FN3555-S Chr6 19283438 Chr1 17779578 0 Translocation 0 LOC_Os01g32410 retrotransposon protein, putative, unclassified, expressed FN3555-S Chr6 19877534 G-A 0 0 Single Base Substitution 0 Homo FN3555-S Chr6 29494900 C-G 0 0 Single Base Substitution 0 HET FN3555-S Chr7 11092250 C-T 0 0 Single Base Substitution 0 HET FN3555-S Chr7 11598160 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g19570 expressed protein FN3555-S Chr7 25953488 A-G 0 0 Single Base Substitution 0 HET FN3555-S Chr7 5698208 5698216 0 0 Deletion 8 HET FN3555-S Chr8 19054327 19054333 0 0 Deletion 6 Homo FN3555-S Chr8 28404342 28404343 0 0 Deletion 1 HET FN3555-S Chr8 583409 662343 0 0 Inversion 0 LOC_Os08g01940 non-lysosomal glucosylceramidase, putative, expressed FN3555-S Chr8 583409 662343 0 0 Inversion 0 LOC_Os08g02050 protein kinase family protein, putative, expressed FN3555-S Chr8 583412 662344 0 0 Inversion 0 LOC_Os08g01940 non-lysosomal glucosylceramidase, putative, expressed FN3555-S Chr8 583412 662344 0 0 Inversion 0 LOC_Os08g02050 protein kinase family protein, putative, expressed FN3555-S Chr8 9191549 C-T 0 0 Single Base Substitution 0 Homo FN3555-S Chr8 9306293 Chr3 19340992 0 Translocation 0 LOC_Os03g33860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3555-S Chr8 9306293 Chr3 19340992 0 Translocation 0 LOC_Os08g15300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3555-S Chr9 1179858 C-G 0 0 Single Base Substitution 0 HET FN3555-S Chr9 13239282 13365607 0 0 Inversion 0 FN3555-S Chr9 13239282 13365607 0 0 Inversion 0 LOC_Os09g22080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g21860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g21870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g21880 hypothetical protein FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g21890 retrotransposon protein, putative, unclassified, expressed FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g21900 expressed protein FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g21910 retrotransposon protein, putative, unclassified, expressed FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g21919 expressed protein FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g21930 expressed protein FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g21940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g21950 retrotransposon protein, putative, Ty3-gypsy subclass FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g21960 transposon protein, putative, CACTA, En/Spm sub-class FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g21970 transposon protein, putative, CACTA, En/Spm sub-class FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g21980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g21990 transposon protein, putative, unclassified FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g22000 hydrolase, HAD superfamily, Cof family, putative, expressed FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g22010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g22020 retrotransposon protein, putative, unclassified, expressed FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g22030 retrotransposon protein, putative, unclassified, expressed FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g22040 expressed protein FN3555-S Chr9 13245001 13355000 0 0 Deletion 109999 LOC_Os09g22050 expressed protein FN3555-S Chr9 18384009 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g30200 ATP binding protein, putative, expressed FN3555-S Chr9 19875789 C-T 0 0 Single Base Substitution 0 HET FN3555-S Chr9 2473277 C-T 0 0 Single Base Substitution 0 HET FN3555-S Chr9 7747075 7747076 0 0 Deletion 1 HET