FN3559-S Chr1 12522338 C-T 0 0 Single Base Substitution 0 HET FN3559-S Chr1 12818190 C-T 0 0 Single Base Substitution 0 Homo FN3559-S Chr1 14935433 14966170 0 0 Inversion 0 FN3559-S Chr1 14935433 14966170 0 0 Inversion 0 LOC_Os01g26390 TKL_IRAK_DUF26-lh.1 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3559-S Chr1 14936872 14966203 0 0 Inversion 0 FN3559-S Chr1 14936872 14966203 0 0 Inversion 0 LOC_Os01g26390 TKL_IRAK_DUF26-lh.1 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3559-S Chr1 31136580 31199463 0 0 Inversion 0 LOC_Os01g54140 expressed protein FN3559-S Chr1 42783316 A-G 0 0 Single Base Substitution 0 Homo FN3559-S Chr1 8113181 C-T 0 0 Single Base Substitution 0 HET FN3559-S Chr1 8544237 8544238 0 0 Deletion 1 Homo FN3559-S Chr10 15824395 T-A 0 0 Single Base Substitution 0 HET FN3559-S Chr10 18159399 T-A 0 0 Single Base Substitution 0 HET FN3559-S Chr10 18210815 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g34120 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3559-S Chr10 385586 385598 0 0 Deletion 12 HET FN3559-S Chr11 12078673 12078693 0 0 Insertion 20 HET FN3559-S Chr11 13143695 G-A 0 0 Single Base Substitution 0 HET FN3559-S Chr11 20807447 A-T 0 0 Single Base Substitution 0 HET FN3559-S Chr11 28860513 G-A 0 0 Single Base Substitution 0 HET FN3559-S Chr11 4620878 4620885 0 0 Deletion 7 frameshift_variant HET LOC_Os11g08660 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed FN3559-S Chr12 11889645 C-A 0 0 Single Base Substitution 0 HET FN3559-S Chr12 1664294 A-G 0 0 Single Base Substitution 0 HET FN3559-S Chr12 20681373 C-T 0 0 Single Base Substitution 0 HET FN3559-S Chr12 23308386 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g37939 unc-93 homolog A, putative, expressed FN3559-S Chr12 25871599 G-T 0 0 Single Base Substitution 0 HET FN3559-S Chr12 7937441 C-T 0 0 Single Base Substitution 0 HET FN3559-S Chr2 34469466 G-A 0 0 Single Base Substitution 0 Homo FN3559-S Chr2 8579206 Chr1 31199469 0 Translocation 0 FN3559-S Chr2 8582566 Chr1 31136612 0 Translocation 0 LOC_Os01g54140 expressed protein FN3559-S Chr2 8582566 Chr1 31136612 0 Translocation 0 LOC_Os02g15340 no apical meristem protein, putative, expressed FN3559-S Chr2 9978346 G-A 0 0 Single Base Substitution 0 HET FN3559-S Chr3 11169112 Chr2 34566126 0 Translocation 0 FN3559-S Chr3 11417106 11487244 0 0 Inversion 0 FN3559-S Chr3 11522641 11522642 0 0 Deletion 1 HET FN3559-S Chr3 12171836 A-T 0 0 Single Base Substitution 0 HET FN3559-S Chr3 14872144 C-T 0 0 Single Base Substitution 0 Homo FN3559-S Chr3 21776121 21776124 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os03g39210 retrotransposon protein, putative, unclassified, expressed FN3559-S Chr3 24251328 24251330 0 0 Deletion 2 frameshift_variant Homo LOC_Os03g43470 pentatricopeptide, putative, expressed FN3559-S Chr3 31934337 C-T 0 0 Single Base Substitution 0 Homo FN3559-S Chr3 8763986 G-C 0 0 Single Base Substitution 0 HET FN3559-S Chr3 9185269 9185274 0 0 Deletion 5 HET FN3559-S Chr4 10438485 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g18770 retrotransposon protein, putative, unclassified, expressed FN3559-S Chr4 14520980 C-T 0 0 Single Base Substitution 0 Homo FN3559-S Chr4 22157492 C-T 0 0 Single Base Substitution 0 Homo FN3559-S Chr4 22591209 22591217 0 0 Deletion 8 HET FN3559-S Chr4 27127547 C-A 0 0 Single Base Substitution 0 HET FN3559-S Chr4 33409623 33409633 0 0 Deletion 10 frameshift_variant Homo LOC_Os04g56090 S-locus-like receptor protein kinase, putative, expressed FN3559-S Chr4 3444022 G-A 0 0 Single Base Substitution 0 Homo FN3559-S Chr4 9848734 9848740 0 0 Deletion 6 Homo FN3559-S Chr5 10398219 10400892 0 0 Inversion 0 FN3559-S Chr5 10398219 10400892 0 0 Inversion 0 LOC_Os05g18080 retrotransposon protein, putative, Ty3-gypsy subclass FN3559-S Chr5 10398220 10400894 0 0 Inversion 0 FN3559-S Chr5 10398220 10400894 0 0 Inversion 0 LOC_Os05g18080 retrotransposon protein, putative, Ty3-gypsy subclass FN3559-S Chr5 15237200 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g26180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3559-S Chr5 16649648 16649666 0 0 Deletion 18 Homo FN3559-S Chr5 1787615 1787625 0 0 Deletion 10 HET FN3559-S Chr5 20754910 Chr3 11417125 0 Translocation 0 FN3559-S Chr5 20756122 Chr3 14880498 0 Translocation 0 FN3559-S Chr5 20756122 Chr3 14880498 0 Translocation 0 LOC_Os03g25980 polypyrimidine tract-binding protein, putative, expressed FN3559-S Chr5 2363551 C-T 0 0 Single Base Substitution 0 HET FN3559-S Chr5 29891083 29891437 0 0 Deletion 354 HET FN3559-S Chr6 1298545 1298547 0 0 Deletion 2 Homo FN3559-S Chr7 13672517 G-A 0 0 Single Base Substitution 0 HET FN3559-S Chr7 16635614 G-A 0 0 Single Base Substitution 0 HET FN3559-S Chr8 1408920 1408926 0 0 Deletion 6 Homo FN3559-S Chr8 1524068 C-T 0 0 Single Base Substitution 0 Homo FN3559-S Chr9 1612432 Chr5 15682773 0 Translocation 0 LOC_Os05g26990 phospholipid-transporting ATPase 2, putative, expressed FN3559-S Chr9 1612432 Chr5 15682773 0 Translocation 0 LOC_Os09g03310 phospholipid-transporting ATPase 2, putative, expressed FN3559-S Chr9 1678299 C-G 0 0 Single Base Substitution 0 HET FN3559-S Chr9 18682342 18682344 0 0 Deletion 2 HET FN3559-S Chr9 20205966 C-T 0 0 Single Base Substitution 0 HET FN3559-S Chr9 20265840 G-T 0 0 Single Base Substitution 0 HET FN3559-S Chr9 22488364 22493068 0 0 Inversion 0 LOC_Os09g39160 thiol protease SEN102 precursor, putative, expressed FN3559-S Chr9 22488364 22493068 0 0 Inversion 0 LOC_Os09g39170 cysteine proteinase COT44 precursor, putative, expressed FN3559-S Chr9 22488433 22493104 0 0 Inversion 0 LOC_Os09g39160 thiol protease SEN102 precursor, putative, expressed FN3559-S Chr9 22488433 22493104 0 0 Inversion 0 LOC_Os09g39170 cysteine proteinase COT44 precursor, putative, expressed FN3559-S Chr9 4161428 Chr8 6664978 0 Translocation 0 FN3559-S Chr9 9006346 T-C 0 0 Single Base Substitution 0 HET