FN3569-S Chr1 10858673 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g19190 retrotransposon protein, putative, unclassified, expressed FN3569-S Chr1 24389579 A-T 0 0 Single Base Substitution 0 HET FN3569-S Chr1 24397332 T-A 0 0 Single Base Substitution 0 HET FN3569-S Chr1 24397333 A-T 0 0 Single Base Substitution 0 HET FN3569-S Chr1 24409241 24409261 0 0 Deletion 20 frameshift_variant HET LOC_Os01g42900 ABC-2 type transporter domain containing protein, expressed FN3569-S Chr1 32658328 32658329 0 0 Deletion 1 Homo FN3569-S Chr1 33165636 G-C 0 0 Single Base Substitution 0 Homo FN3569-S Chr1 34047786 34047787 0 0 Insertion 1 HET FN3569-S Chr1 35770112 35770114 0 0 Insertion 2 HET FN3569-S Chr1 5004743 C-T 0 0 Single Base Substitution 0 HET FN3569-S Chr1 6058526 C-T 0 0 Single Base Substitution 0 HET FN3569-S Chr1 6058527 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g11300 cytochrome P450, putative, expressed FN3569-S Chr1 7668607 A-C 0 0 Single Base Substitution 0 HET FN3569-S Chr10 12206886 T-C 0 0 Single Base Substitution 0 HET FN3569-S Chr10 16637009 C-T 0 0 Single Base Substitution 0 HET FN3569-S Chr10 18474711 A-G 0 0 Single Base Substitution 0 HET FN3569-S Chr10 19987204 G-T 0 0 Single Base Substitution 0 HET FN3569-S Chr10 3886393 3908396 0 0 Inversion 0 FN3569-S Chr10 3886393 3908396 0 0 Inversion 0 LOC_Os10g07400 disease resistance RPP13-like protein 1, putative, expressed FN3569-S Chr10 3886413 3908435 0 0 Inversion 0 FN3569-S Chr10 3886413 3908435 0 0 Inversion 0 LOC_Os10g07400 disease resistance RPP13-like protein 1, putative, expressed FN3569-S Chr10 3978938 C-G 0 0 Single Base Substitution 0 Homo FN3569-S Chr11 1358010 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os11g03510 1-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed FN3569-S Chr11 2326007 C-T 0 0 Single Base Substitution 0 Homo FN3569-S Chr11 26960166 Chr5 27709523 0 Translocation 0 LOC_Os11g44590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3569-S Chr11 27121659 27121699 0 0 Insertion 40 HET FN3569-S Chr11 3949472 G-C 0 0 Single Base Substitution 0 Homo FN3569-S Chr12 27207326 C-A 0 0 Single Base Substitution 0 HET FN3569-S Chr12 414016 414035 0 0 Deletion 19 HET FN3569-S Chr12 6784257 6784258 0 0 Deletion 1 Homo FN3569-S Chr12 7236857 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g13030 osFTL7 FT-Like7 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed FN3569-S Chr2 13641254 13641409 0 0 Deletion 155 HET FN3569-S Chr2 16371377 C-T 0 0 Single Base Substitution 0 HET FN3569-S Chr2 20280340 20280350 0 0 Deletion 10 Homo FN3569-S Chr2 20280421 20280422 0 0 Insertion 1 HET FN3569-S Chr3 11666633 11666636 0 0 Deletion 3 HET FN3569-S Chr3 13393001 13430000 0 0 Deletion 36999 LOC_Os03g23190 retrotransposon protein, putative, unclassified FN3569-S Chr3 13393001 13430000 0 0 Deletion 36999 LOC_Os03g23200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3569-S Chr3 13393001 13430000 0 0 Deletion 36999 LOC_Os03g23210 retrotransposon protein, putative, unclassified, expressed FN3569-S Chr3 13586553 Chr1 37809771 0 Translocation 0 FN3569-S Chr3 21960582 21960600 0 0 Insertion 18 HET FN3569-S Chr3 23042012 G-A 0 0 Single Base Substitution 0 HET FN3569-S Chr3 23660906 23660908 0 0 Deletion 2 HET FN3569-S Chr3 28124398 A-G 0 0 Single Base Substitution 0 HET FN3569-S Chr3 31963539 C-T 0 0 Single Base Substitution 0 HET FN3569-S Chr3 7881323 A-C 0 0 Single Base Substitution 0 Homo FN3569-S Chr3 9074989 9074991 0 0 Deletion 2 frameshift_variant Homo LOC_Os03g16450 pentatricopeptide, putative, expressed FN3569-S Chr4 11663448 11663451 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os04g20790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3569-S Chr4 12111001 12147000 0 0 Deletion 35999 LOC_Os04g21430 expressed protein FN3569-S Chr4 12111001 12147000 0 0 Deletion 35999 LOC_Os04g21450 retrotransposon, putative, centromere-specific FN3569-S Chr4 12111001 12147000 0 0 Deletion 35999 LOC_Os04g21460 expressed protein FN3569-S Chr4 12111001 12147000 0 0 Deletion 35999 LOC_Os04g21470 PPR repeat domain containing protein, putative, expressed FN3569-S Chr4 12111001 12147000 0 0 Deletion 35999 LOC_Os04g21480 retrotransposon protein, putative, unclassified, expressed FN3569-S Chr4 12547651 C-A 0 0 Single Base Substitution 0 HET FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22750 hypothetical protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22760 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22770 hypothetical protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22780 transposon protein, putative, unclassified FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22800 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22810 transposon protein, putative, CACTA, En/Spm sub-class FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22820 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22830 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22850 transposon protein, putative, CACTA, En/Spm sub-class FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22860 protein phosphatase 1 regulatory subunit 11, putative, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22870 rpp14 family protein, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22880 conserved hypothetical protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22890 hypothetical protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22900 jasmonate-induced protein, putative, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22910 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22920 retrotransposon protein, putative, unclassified, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22930 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22940 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22950 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22960 retrotransposon protein, putative, unclassified, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22970 retrotransposon protein, putative, unclassified, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g22990 retrotransposon protein, putative, unclassified, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23000 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23010 retrotransposon protein, putative, unclassified FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23020 retrotransposon protein, putative, unclassified, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23030 retrotransposon protein, putative, unclassified, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23040 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23050 retrotransposon protein, putative, unclassified FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23060 retrotransposon protein, putative, unclassified, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23070 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23090 hypothetical protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23100 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23120 hypothetical protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23130 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23140 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23170 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23180 cation efflux family protein, putative, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23190 retrotransposon protein, putative, unclassified, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23200 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23210 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23220 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23230 expressed protein FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23240 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3569-S Chr4 12892001 13296000 0 0 Deletion 403999 LOC_Os04g23290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3569-S Chr4 15937864 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g26940 retrotransposon protein, putative, unclassified FN3569-S Chr4 18899222 G-T 0 0 Single Base Substitution 0 HET FN3569-S Chr4 19950274 G-T 0 0 Single Base Substitution 0 Homo FN3569-S Chr4 25818962 25818963 0 0 Deletion 1 Homo FN3569-S Chr4 27959258 27959259 0 0 Deletion 1 Homo FN3569-S Chr4 29380342 A-T 0 0 Single Base Substitution 0 HET FN3569-S Chr4 512989 Chr3 19927156 0 Translocation 0 FN3569-S Chr4 5709717 T-G 0 0 Single Base Substitution 0 HET FN3569-S Chr5 10219489 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g17780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3569-S Chr5 13102503 T-G 0 0 Single Base Substitution 0 HET FN3569-S Chr5 18987591 18987593 0 0 Deletion 2 Homo FN3569-S Chr5 29776453 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g51890 retrotransposon protein, putative, unclassified, expressed FN3569-S Chr5 6683215 6683226 0 0 Deletion 11 HET FN3569-S Chr5 8884872 8884883 0 0 Deletion 11 frameshift_variant HET LOC_Os05g15720 expressed protein FN3569-S Chr6 22853265 Chr1 33907213 0 Translocation 0 FN3569-S Chr6 22853265 Chr1 33907213 0 Translocation 0 LOC_Os01g58650 LTPL35 - Protease inhibitor/seed storage/LTP family protein precursor, putative FN3569-S Chr6 31526 31528 0 0 Insertion 2 HET FN3569-S Chr6 5420727 C-T 0 0 Single Base Substitution 0 HET FN3569-S Chr7 10682045 A-T 0 0 Single Base Substitution 0 HET FN3569-S Chr7 26050219 26050225 0 0 Insertion 6 HET FN3569-S Chr7 28250481 28250491 0 0 Deletion 10 Homo FN3569-S Chr7 28479262 T-G 0 0 Single Base Substitution 0 Homo FN3569-S Chr7 4411655 A-T 0 0 Single Base Substitution 0 HET FN3569-S Chr7 4686934 4686935 0 0 Deletion 1 frameshift_variant HET LOC_Os07g09000 WD domain, G-beta repeat domain containing protein, expressed FN3569-S Chr7 4961001 4987000 0 0 Deletion 25999 LOC_Os07g09400 RNA ligase isoform 1, putative, expressed FN3569-S Chr7 4961001 4987000 0 0 Deletion 25999 LOC_Os07g09410 retrotransposon protein, putative, unclassified FN3569-S Chr7 4961001 4987000 0 0 Deletion 25999 LOC_Os07g09420 ATPase, putative, expressed FN3569-S Chr7 4961001 4987000 0 0 Deletion 25999 LOC_Os07g09430 expressed protein FN3569-S Chr7 4961001 4987000 0 0 Deletion 25999 LOC_Os07g09450 heat shock protein DnaJ, putative, expressed FN3569-S Chr7 4961001 4987000 0 0 Deletion 25999 LOC_Os07g09460 expressed protein FN3569-S Chr7 4998650 C-T 0 0 Single Base Substitution 0 HET FN3569-S Chr7 6894587 C-T 0 0 Single Base Substitution 0 HET FN3569-S Chr8 1037257 T-C 0 0 Single Base Substitution 0 HET FN3569-S Chr8 13161677 13161694 0 0 Deletion 17 HET FN3569-S Chr8 19117960 Chr3 13463548 0 Translocation 0 FN3569-S Chr8 19117960 Chr3 13463548 0 Translocation 0 LOC_Os03g23760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3569-S Chr8 6339422 6339427 0 0 Deletion 5 HET FN3569-S Chr8 7449336 7449344 0 0 Deletion 8 HET FN3569-S Chr8 9484637 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g15610 expressed protein FN3569-S Chr8 9484812 9484815 0 0 Deletion 3 inframe_deletion HET LOC_Os08g15610 expressed protein FN3569-S Chr9 6039860 6039881 0 0 Deletion 21 disruptive_inframe_deletion Homo LOC_Os09g10960 SWP, putative, expressed