FN3570-S Chr1 19468120 19683897 0 0 Inversion 0 LOC_Os01g35170 tRNA methyltransferase, putative, expressed FN3570-S Chr1 19468120 19683897 0 0 Inversion 0 LOC_Os01g35580 expressed protein FN3570-S Chr1 21436772 C-T 0 0 Single Base Substitution 0 HET FN3570-S Chr1 23841417 23841431 0 0 Deletion 14 HET FN3570-S Chr1 3670591 G-C 0 0 Single Base Substitution 0 HET FN3570-S Chr1 42913102 C-T 0 0 Single Base Substitution 0 HET FN3570-S Chr1 6508172 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g11952 histone-lysine N-methyltransferase ATX5, putative, expressed FN3570-S Chr1 7132307 G-T 0 0 Single Base Substitution 0 HET FN3570-S Chr10 17995540 17995544 0 0 Deletion 4 HET FN3570-S Chr10 6398993 G-A 0 0 Single Base Substitution 0 HET FN3570-S Chr11 3563302 G-A 0 0 Single Base Substitution 0 HET FN3570-S Chr11 3694145 T-A 0 0 Single Base Substitution 0 HET FN3570-S Chr12 1008619 T-A 0 0 Single Base Substitution 0 HET FN3570-S Chr12 26566014 26684861 0 0 Inversion 0 LOC_Os12g42950 expressed protein FN3570-S Chr12 26566060 26684888 0 0 Inversion 0 LOC_Os12g42950 expressed protein FN3570-S Chr12 5322036 A-T 0 0 Single Base Substitution 0 HET FN3570-S Chr12 8225166 A-G 0 0 Single Base Substitution 0 HET FN3570-S Chr2 1534001 1572000 0 0 Deletion 37999 LOC_Os02g03670 expressed protein FN3570-S Chr2 1534001 1572000 0 0 Deletion 37999 LOC_Os02g03680 expressed protein FN3570-S Chr2 1534001 1572000 0 0 Deletion 37999 LOC_Os02g03690 beta-amylase, putative, expressed FN3570-S Chr2 1534001 1572000 0 0 Deletion 37999 LOC_Os02g03700 expressed protein FN3570-S Chr2 1534001 1572000 0 0 Deletion 37999 LOC_Os02g03710 UP-9A, putative, expressed FN3570-S Chr2 1534001 1572000 0 0 Deletion 37999 LOC_Os02g03720 expressed protein FN3570-S Chr2 1534001 1572000 0 0 Deletion 37999 LOC_Os02g03730 SWIB/MDM2 domain containing protein, expressed FN3570-S Chr2 1534001 1572000 0 0 Deletion 37999 LOC_Os02g03740 pyridoxal biosynthesis protein PDX2, putative, expressed FN3570-S Chr2 1534001 1572000 0 0 Deletion 37999 LOC_Os02g03750 polygalacturonase, putative, expressed FN3570-S Chr2 17046560 A-G 0 0 Single Base Substitution 0 HET FN3570-S Chr2 22209188 G-T 0 0 Single Base Substitution 0 HET FN3570-S Chr2 3346723 T-A 0 0 Single Base Substitution 0 HET FN3570-S Chr2 7455386 G-A 0 0 Single Base Substitution 0 HET FN3570-S Chr3 13788612 A-G 0 0 Single Base Substitution 0 HET FN3570-S Chr3 14540190 C-T 0 0 Single Base Substitution 0 HET FN3570-S Chr3 15022558 15022571 0 0 Deletion 13 frameshift_variant Homo LOC_Os03g26260 NB-ARC domain containing protein, expressed FN3570-S Chr3 23612071 G-A 0 0 Single Base Substitution 0 HET FN3570-S Chr3 32732401 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g57400 expressed protein FN3570-S Chr3 5201873 C-A 0 0 Single Base Substitution 0 HET FN3570-S Chr4 10560549 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g19000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3570-S Chr4 1223030 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g03000 transposon protein, putative, unclassified, expressed FN3570-S Chr4 1517874 A-G 0 0 Single Base Substitution 0 HET FN3570-S Chr4 16107307 A-G 0 0 Single Base Substitution 0 HET FN3570-S Chr4 2601822 C-T 0 0 Single Base Substitution 0 HET FN3570-S Chr4 4265149 Chr3 24861154 0 Translocation 0 LOC_Os03g44240 retrotransposon protein, putative, unclassified, expressed FN3570-S Chr4 5486302 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g10160 cytochrome P450, putative, expressed FN3570-S Chr4 6545209 G-A 0 0 Single Base Substitution 0 HET FN3570-S Chr5 18313228 T-A 0 0 Single Base Substitution 0 Homo FN3570-S Chr5 26328883 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g45380 expressed protein FN3570-S Chr5 5658200 5692975 0 0 Inversion 0 LOC_Os05g10380 RWP-RK, putative, expressed FN3570-S Chr5 5658200 5692975 0 0 Inversion 0 LOC_Os05g10460 transposon protein, putative, CACTA, En/Spm sub-class FN3570-S Chr5 5658208 5903155 0 0 Inversion 0 LOC_Os05g10380 RWP-RK, putative, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10470 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10480 expressed protein FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10490 expressed protein FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10500 retrotransposon protein, putative, unclassified FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10510 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10520 retrotransposon protein, putative, unclassified, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10530 retrotransposon protein, putative, unclassified, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10540 retrotransposon protein, putative, unclassified, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10550 expressed protein FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10560 expressed protein FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10570 expressed protein FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10580 cullin family domain containing protein, putative, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10590 expressed protein FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10600 expressed protein FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10620 no apical meristem protein, putative, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10625 expressed protein FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10630 O-sialoglycoprotein endopeptidase, putative, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10640 hAT dimerisation domain-containing protein, putative, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10650 6-phosphofructokinase, putative, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10670 zinc finger CCCH type family protein, putative, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10680 expressed protein FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10690 Myb transcription factor, putative, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10700 retrotransposon protein, putative, unclassified, expressed FN3570-S Chr5 5695001 5900000 0 0 Deletion 204999 LOC_Os05g10710 retrotransposon protein, putative, unclassified, expressed FN3570-S Chr5 5903966 G-A 0 0 Single Base Substitution 0 HET FN3570-S Chr5 5903973 G-C 0 0 Single Base Substitution 0 HET FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11380 OsMADS66 - MADS-box family gene with MIKCc type-box, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11390 retrotransposon protein, putative, Ty3-gypsy subclass FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11414 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11428 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11460 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11470 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11490 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11500 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11510 B-box zinc finger family protein, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11520 zinc knuckle family protein, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11530 hypothetical protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11540 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11550 serine/threonine protein phosphatase 5, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11560 aquaporin protein, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11570 NLI interacting factor-like phosphatase, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11580 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11590 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11600 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11610 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11620 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11630 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11640 hypothetical protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11650 GIL1, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11660 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11670 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11680 retrotransposon protein, putative, unclassified FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11700 PPR repeat containing protein, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11710 ribosomal protein L5, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11720 zinc finger, C3HC4 type domain containing protein, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11730 CGMC_GSK.7 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11740 hypothetical protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11750 protein kinase, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11760 hypothetical protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11770 ulp1 protease family protein, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11780 mitochondrial carrier protein, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11790 CAMK_KIN1/SNF1/Nim1_like.19 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11810 gibberellin 2-beta-dioxygenase 1, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11820 retrotransposon protein, putative, unclassified, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11840 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11850 glycosyl hydrolase family 47 domain contain protein, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11860 zinc finger, C3HC4 type domain containing protein, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11870 hydrolase, NUDIX family, domain containing protein, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11890 retrotransposon protein, putative, Ty3-gypsy subclass FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11900 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11910 GDSL-like lipase/acylhydrolase, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11920 hypothetical protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11930 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11940 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11950 GDSL-like lipase/acylhydrolase, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11960 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11970 GDSL-like lipase/acylhydrolase, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11980 timeless protein, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g11990 TTL1, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12000 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12010 hypothetical protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12020 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12030 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12040 cytochrome P450 51, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12050 retrotransposon protein, putative, unclassified FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12060 retrotransposon protein, putative, unclassified, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12070 retrotransposon protein, putative, unclassified, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12080 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12090 VQ domain containing protein, putative FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12094 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12100 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12110 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12120 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12130 EMB2261, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12140 Leucine Rich Repeat family protein, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12150 endoglucanase precursor, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12160 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12170 plant-specific domain TIGR01589 family protein, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12180 chalcone synthase, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12190 chalcone synthase, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12200 transposon protein, putative, CACTA, En/Spm sub-class FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12210 chalcone synthase, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12220 hypothetical protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12230 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12240 chalcone synthase, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12250 hypothetical protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12260 CAPIP1, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12270 expressed protein FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12280 clumping factor A precursor, putative, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12290 retrotransposon protein, putative, unclassified, expressed FN3570-S Chr5 6432001 7071000 0 0 Deletion 638999 LOC_Os05g12300 expressed protein FN3570-S Chr5 7783236 C-T 0 0 Single Base Substitution 0 HET FN3570-S Chr5 9181951 T-A 0 0 Single Base Substitution 0 HET FN3570-S Chr5 9870527 Chr4 15936440 0 Translocation 0 FN3570-S Chr6 14262516 T-A 0 0 Single Base Substitution 0 HET FN3570-S Chr6 15645443 G-A 0 0 Single Base Substitution 0 HET FN3570-S Chr6 16595162 G-A 0 0 Single Base Substitution 0 HET FN3570-S Chr6 21610001 21641000 0 0 Deletion 30999 LOC_Os06g36710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3570-S Chr6 21610001 21641000 0 0 Deletion 30999 LOC_Os06g36720 retrotransposon protein, putative, unclassified, expressed FN3570-S Chr6 21610001 21641000 0 0 Deletion 30999 LOC_Os06g36730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3570-S Chr6 21610001 21641000 0 0 Deletion 30999 LOC_Os06g36740 pollen-specific protein SF21, putative, expressed FN3570-S Chr6 28561850 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g47130 C2 domain containing protein, expressed FN3570-S Chr6 28607046 28607046 0 0 Insertion 140 HET FN3570-S Chr6 9736108 G-A 0 0 Single Base Substitution 0 HET FN3570-S Chr6 9736110 C-T 0 0 Single Base Substitution 0 HET FN3570-S Chr7 17055318 T-C 0 0 Single Base Substitution 0 HET FN3570-S Chr7 22831816 T-C 0 0 Single Base Substitution 0 HET FN3570-S Chr8 11633139 A-G 0 0 Single Base Substitution 0 HET FN3570-S Chr8 21890634 21890634 0 0 Insertion 1 HET FN3570-S Chr8 24110152 24110165 0 0 Deletion 13 HET FN3570-S Chr8 25164756 Chr4 18033538 0 Translocation 0 FN3570-S Chr8 25165494 Chr2 27987816 0 Translocation 0 LOC_Os02g45920 expressed protein FN3570-S Chr8 25195036 A-T 0 0 Single Base Substitution 0 Homo FN3570-S Chr8 25195037 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os08g39810 retrotransposon protein, putative, unclassified, expressed FN3570-S Chr9 11760160 T-C 0 0 Single Base Substitution 0 HET FN3570-S Chr9 15492382 C-T 0 0 Single Base Substitution 0 HET FN3570-S Chr9 19652745 C-T 0 0 Single Base Substitution 0 HET FN3570-S Chr9 22414570 G-T 0 0 Single Base Substitution 0 HET FN3570-S Chr9 4453214 Chr8 19754312 0 Translocation 0