FN3599-S Chr1 16890129 G-C 0 0 Single Base Substitution 0 HET FN3599-S Chr1 17514854 G-C 0 0 Single Base Substitution 0 Homo FN3599-S Chr1 33510736 33510738 0 0 Insertion 2 HET FN3599-S Chr1 33615147 G-A 0 0 Single Base Substitution 0 HET FN3599-S Chr1 3564035 3564036 0 0 Deletion 1 frameshift_variant HET LOC_Os01g07490 RST1, putative, expressed FN3599-S Chr1 36595681 36595683 0 0 Insertion 2 HET FN3599-S Chr1 39776964 C-G 0 0 Single Base Substitution 0 HET FN3599-S Chr10 855924 C-T 0 0 Single Base Substitution 0 HET FN3599-S Chr11 11801298 11801302 0 0 Deletion 4 HET FN3599-S Chr11 12558462 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g21870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3599-S Chr11 14480752 G-A 0 0 Single Base Substitution 0 Homo FN3599-S Chr11 15489054 15489060 0 0 Deletion 6 HET FN3599-S Chr11 24897488 25828857 0 0 Inversion 0 FN3599-S Chr11 25769559 C-T 0 0 Single Base Substitution 0 HET FN3599-S Chr11 25828842 Chr9 22933528 0 Translocation 0 FN3599-S Chr11 28844126 28844149 0 0 Deletion 23 HET FN3599-S Chr11 863138 863151 0 0 Deletion 13 HET FN3599-S Chr11 9558645 Chr4 13186225 0 Translocation 0 FN3599-S Chr12 11289335 C-A 0 0 Single Base Substitution 0 Homo FN3599-S Chr12 12261671 C-G 0 0 Single Base Substitution 0 HET FN3599-S Chr12 21049593 21049614 0 0 Deletion 21 HET FN3599-S Chr12 22617570 A-C 0 0 Single Base Substitution 0 HET FN3599-S Chr12 22867847 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g37270 retrotransposon protein, putative, unclassified, expressed FN3599-S Chr12 395411 395431 0 0 Deletion 20 HET FN3599-S Chr2 1025414 1025415 0 0 Deletion 1 HET FN3599-S Chr2 11385050 C-T 0 0 Single Base Substitution 0 Homo FN3599-S Chr2 17618723 17618727 0 0 Deletion 4 HET FN3599-S Chr2 23709001 23739000 0 0 Deletion 29999 LOC_Os02g39250 retrotransposon protein, putative, unclassified FN3599-S Chr2 23709001 23739000 0 0 Deletion 29999 LOC_Os02g39260 cyclin, putative, expressed FN3599-S Chr2 23709001 23739000 0 0 Deletion 29999 LOC_Os02g39280 C2 domain containing protein, putative, expressed FN3599-S Chr2 23709001 23739000 0 0 Deletion 29999 LOC_Os02g39290 TRAF-type zinc finger family protein, expressed FN3599-S Chr2 23709001 23739000 0 0 Deletion 29999 LOC_Os02g39300 RNA-binding protein Luc7-like, putative, expressed FN3599-S Chr2 23709001 23739000 0 0 Deletion 29999 LOC_Os02g39310 expressed protein FN3599-S Chr2 2390211 C-T 0 0 Single Base Substitution 0 Homo FN3599-S Chr2 29922257 29922572 0 0 Inversion 0 LOC_Os02g48920 ubiquitin-conjugating enzyme, putative, expressed FN3599-S Chr2 30345982 30345990 0 0 Deletion 8 Homo FN3599-S Chr3 10212104 T-A 0 0 Single Base Substitution 0 HET FN3599-S Chr3 14297982 14297986 0 0 Deletion 4 HET FN3599-S Chr3 14311635 A-T 0 0 Single Base Substitution 0 HET FN3599-S Chr3 14311636 A-T 0 0 Single Base Substitution 0 HET FN3599-S Chr3 17366444 C-T 0 0 Single Base Substitution 0 Homo FN3599-S Chr3 18313720 G-A 0 0 Single Base Substitution 0 Homo FN3599-S Chr3 1838424 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g04030 HVA22, putative, expressed FN3599-S Chr3 25159324 T-A 0 0 Single Base Substitution 0 HET FN3599-S Chr3 30216494 A-C 0 0 Single Base Substitution 0 HET FN3599-S Chr3 30815278 30815281 0 0 Insertion 3 HET FN3599-S Chr3 8965179 8965205 0 0 Deletion 26 frameshift_variant&splice_acceptor_variant&splice_region_variant&intron_variant HET LOC_Os03g16260 protein kinase, putative, expressed FN3599-S Chr4 15325223 C-A 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os04g26290 retrotransposon protein, putative, unclassified, expressed FN3599-S Chr4 16406571 C-T 0 0 Single Base Substitution 0 HET FN3599-S Chr4 19543288 19543294 0 0 Deletion 6 HET FN3599-S Chr4 27250912 G-T 0 0 Single Base Substitution 0 HET FN3599-S Chr4 5736256 5736257 0 0 Deletion 1 HET FN3599-S Chr5 18217872 T-C 0 0 Single Base Substitution 0 Homo FN3599-S Chr5 19201354 T-A 0 0 Single Base Substitution 0 HET FN3599-S Chr5 19201355 A-C 0 0 Single Base Substitution 0 HET FN3599-S Chr5 19487331 19487335 0 0 Deletion 4 HET FN3599-S Chr5 19923217 T-A 0 0 Single Base Substitution 0 HET FN3599-S Chr5 20369899 T-A 0 0 Single Base Substitution 0 Homo FN3599-S Chr5 21823612 C-T 0 0 Single Base Substitution 0 HET FN3599-S Chr5 873162 A-G 0 0 Single Base Substitution 0 HET FN3599-S Chr6 12145358 12894647 0 0 Inversion 0 LOC_Os06g21020 methyltransferase, putative, expressed FN3599-S Chr6 12145358 12894647 0 0 Inversion 0 LOC_Os06g22230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3599-S Chr6 12145372 12894671 0 0 Inversion 0 LOC_Os06g21020 methyltransferase, putative, expressed FN3599-S Chr6 12145372 12894671 0 0 Inversion 0 LOC_Os06g22230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3599-S Chr6 13121296 13121301 0 0 Deletion 5 HET FN3599-S Chr6 20211010 G-A 0 0 Single Base Substitution 0 HET FN3599-S Chr6 20791057 C-T 0 0 Single Base Substitution 0 HET FN3599-S Chr6 2755618 2755620 0 0 Insertion 2 HET FN3599-S Chr6 6694607 6694616 0 0 Deletion 9 HET FN3599-S Chr7 19292417 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g32430 pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative, expressed FN3599-S Chr7 20457901 20457905 0 0 Insertion 4 HET FN3599-S Chr7 23574105 C-G 0 0 Single Base Substitution 0 HET FN3599-S Chr7 27832954 A-C 0 0 Single Base Substitution 0 HET FN3599-S Chr7 6991719 6991724 0 0 Deletion 5 Homo FN3599-S Chr8 12700390 A-G 0 0 Single Base Substitution 0 HET FN3599-S Chr8 1528888 1528893 0 0 Deletion 5 HET FN3599-S Chr8 20636061 A-G 0 0 Single Base Substitution 0 HET FN3599-S Chr8 2147240 C-T 0 0 Single Base Substitution 0 HET FN3599-S Chr8 586655 G-A 0 0 Single Base Substitution 0 HET FN3599-S Chr9 12514176 G-A 0 0 Single Base Substitution 0 Homo FN3599-S Chr9 22239851 C-A 0 0 Single Base Substitution 0 HET FN3599-S Chr9 22239852 C-A 0 0 Single Base Substitution 0 HET FN3599-S Chr9 5333792 5333794 0 0 Insertion 2 HET