FN3607-S Chr1 22100734 22100735 0 0 Deletion 1 Homo FN3607-S Chr1 26530669 C-T 0 0 Single Base Substitution 0 Homo FN3607-S Chr1 34975675 G-A 0 0 Single Base Substitution 0 HET FN3607-S Chr10 10187515 C-T 0 0 Single Base Substitution 0 HET FN3607-S Chr10 18925465 18925489 0 0 Deletion 24 disruptive_inframe_deletion HET LOC_Os10g35400 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr10 20516343 20516345 0 0 Deletion 2 HET FN3607-S Chr11 13631614 13631623 0 0 Deletion 9 HET FN3607-S Chr11 14447578 14447578 0 0 Insertion 1 HET FN3607-S Chr11 14952169 T-C 0 0 Single Base Substitution 0 HET FN3607-S Chr11 16663719 C-A 0 0 Single Base Substitution 0 HET FN3607-S Chr11 19395122 G-C 0 0 Single Base Substitution 0 HET FN3607-S Chr11 19549020 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g33070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr11 20304055 A-G 0 0 Single Base Substitution 0 HET FN3607-S Chr11 25799317 T-A 0 0 Single Base Substitution 0 HET FN3607-S Chr11 3634168 G-T 0 0 Single Base Substitution 0 HET FN3607-S Chr11 5853090 G-A 0 0 Single Base Substitution 0 HET FN3607-S Chr11 6038604 6038607 0 0 Deletion 3 HET FN3607-S Chr11 7207477 7867332 0 0 Inversion 0 LOC_Os11g14120 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14120 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14130 mTERF family protein, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14140 OsFBK25 - F-box domain and kelch repeat containing protein, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14150 transposon protein, putative, Pong sub-class, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14160 transposon protein, putative, Pong sub-class, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14170 OsDegp12 - Putative Deg protease homologue, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14180 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14190 ARGOS, putative, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14200 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14210 hypothetical protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14220 tubulin/FtsZ domain containing protein, putative, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14230 uncharacterized protein yqxC, putative, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14240 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14250 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14260 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14270 transposon protein, putative, unclassified, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14280 transposon protein, putative, unclassified, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14290 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14300 la domain containing protein, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14310 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14320 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14330 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14360 retrotransposon, putative, centromere-specific FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14370 hypothetical protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14380 resistance protein LR10, putative, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14390 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14400 polygalacturonase, putative, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14410 polygalacturonase, putative, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14420 inactive receptor kinase At1g27190 precursor, putative, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14430 APOBEC1 complementation factor, putative, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14440 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14450 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14470 transposon protein, putative, unclassified FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14480 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14490 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14500 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14510 transposon protein, putative, unclassified, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14520 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14525 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14530 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14544 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14570 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14590 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14600 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14620 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14630 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14640 retrotransposon protein, putative, Ty3-gypsy subclass FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14670 transposon protein, putative, CACTA, En/Spm sub-class FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14680 hypothetical protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14690 hypothetical protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14700 hypothetical protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14710 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14720 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14730 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14740 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14750 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14760 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14770 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14780 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14790 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14810 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14820 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14830 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14840 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14860 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14870 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14880 LTPL32 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14890 expressed protein FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14900 thiol protease SEN102 precursor, putative, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14910 NADP-dependent oxidoreductase, putative, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr11 7867001 8409000 0 0 Deletion 541999 LOC_Os11g14930 expressed protein FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g14950 ACT domain containing protein, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g14960 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g14970 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g14980 pentatricopeptide, putative, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g14990 expressed protein FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15000 expressed protein FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15010 transposon protein, putative, Mutator sub-class, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15020 expressed protein FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15030 SAM dependent carboxyl methyltransferase, putative, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15040 S-adenosyl-L-methionine:benzoic acid/salicylic acid carboxyl methyltransferase, putative, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15050 expressed protein FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15060 SAM dependent carboxyl methyltransferase, putative, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15110 nucleic acid binding protein, putative, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15130 jasmonate O-methyltransferase, putative, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15140 retrotransposon, putative, centromere-specific, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15150 retrotransposon, putative, centromere-specific, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15170 transposon protein, putative, unclassified, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15180 SAM dependent carboxyl methyltransferase, putative, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15190 RGH1A, putative, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15200 expressed protein FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15210 anthocyanin regulatory Lc protein, putative, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15220 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15230 expressed protein FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15240 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15250 THION31 - Plant thionin family protein precursor, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15280 TNP1, putative, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15300 SAM dependent carboxyl methyltransferase, putative, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15310 methyltransferase, putative, expressed FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15320 expressed protein FN3607-S Chr11 8415001 8690000 0 0 Deletion 274999 LOC_Os11g15340 SAM dependent carboxyl methyltransferase family protein, putative, expressed FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15370 sulfotransferase domain containing protein, expressed FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15390 hypothetical protein FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15400 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15410 S-adenosyl-L-methionine:benzoic acid/salicylic acid carboxyl methyltransferase, putative, expressed FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15420 expressed protein FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15440 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15450 retrotransposon protein, putative, unclassified FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15460 expressed protein FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15470 expressed protein FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15490 expressed protein FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15500 stripe rust resistance protein Yr10, putative, expressed FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15510 expressed protein FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15520 OsSub62 - Putative Subtilisin homologue, expressed FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15530 conserved hypothetical protein FN3607-S Chr11 8700001 8809000 0 0 Deletion 108999 LOC_Os11g15540 hypothetical protein FN3607-S Chr12 10449721 G-T 0 0 Single Base Substitution 0 HET FN3607-S Chr12 13442219 G-A 0 0 Single Base Substitution 0 HET FN3607-S Chr12 2056500 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g04810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3607-S Chr12 5661205 C-T 0 0 Single Base Substitution 0 HET FN3607-S Chr12 8776163 A-C 0 0 Single Base Substitution 0 HET FN3607-S Chr2 14626305 C-T 0 0 Single Base Substitution 0 HET FN3607-S Chr2 29738090 29738099 0 0 Deletion 9 inframe_deletion Homo LOC_Os02g48570 peptide transporter PTR2, putative, expressed FN3607-S Chr3 27785563 G-C 0 0 Single Base Substitution 0 HET FN3607-S Chr3 487107 C-T 0 0 Single Base Substitution 0 Homo FN3607-S Chr4 11987306 C-G 0 0 Single Base Substitution 0 Homo FN3607-S Chr4 28771870 28771880 0 0 Deletion 10 Homo FN3607-S Chr4 28813802 T-C 0 0 Single Base Substitution 0 Homo FN3607-S Chr4 3292769 T-C 0 0 Single Base Substitution 0 Homo FN3607-S Chr4 8534995 8534997 0 0 Deletion 2 HET FN3607-S Chr5 10811556 10811561 0 0 Deletion 5 Homo FN3607-S Chr5 13287153 13287156 0 0 Deletion 3 HET FN3607-S Chr5 29939605 29939605 0 0 Insertion 25 HET FN3607-S Chr5 345018 345020 0 0 Deletion 2 HET FN3607-S Chr6 28272821 C-T 0 0 Single Base Substitution 0 HET FN3607-S Chr6 30179384 T-A 0 0 Single Base Substitution 0 HET FN3607-S Chr6 30436203 G-A 0 0 Single Base Substitution 0 Homo FN3607-S Chr7 11481459 C-T 0 0 Single Base Substitution 0 Homo FN3607-S Chr7 11481464 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g19400 pentatricopeptide domain containing protein, putative, expressed FN3607-S Chr7 15107283 15107284 0 0 Deletion 1 frameshift_variant HET LOC_Os07g26270 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr7 21044866 A-T 0 0 Single Base Substitution 0 Homo FN3607-S Chr7 28677582 G-A 0 0 Single Base Substitution 0 Homo FN3607-S Chr8 11821485 C-T 0 0 Single Base Substitution 0 HET FN3607-S Chr8 15634249 15634250 0 0 Deletion 1 HET FN3607-S Chr8 7683212 7683213 0 0 Deletion 1 frameshift_variant HET LOC_Os08g12920 retrotransposon protein, putative, unclassified, expressed FN3607-S Chr9 15932587 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g26380 aminotransferase, classes I and II, domain containing protein, expressed FN3607-S Chr9 4757267 Chr4 1178866 0 Translocation 0 FN3607-S Chr9 7831493 T-C 0 0 Single Base Substitution 0 Homo