FN3664-S Chr1 42766057 C-T 0 0 Single Base Substitution 0 HET FN3664-S Chr1 42907122 G-A 0 0 Single Base Substitution 0 HET FN3664-S Chr1 6824492 6824496 0 0 Deletion 4 HET FN3664-S Chr1 856312 856320 0 0 Deletion 8 Homo FN3664-S Chr10 15163769 A-G 0 0 Single Base Substitution 0 HET FN3664-S Chr10 407975 407975 0 0 Insertion 110 disruptive_inframe_insertion HET LOC_Os10g016 FN3664-S Chr10 6582742 Chr9 7136331 0 Translocation 0 LOC_Os09g12480 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN3664-S Chr10 6582742 Chr9 7136331 0 Translocation 0 LOC_Os10g11870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3664-S Chr10 7673651 7673651 0 0 Insertion 27 HET FN3664-S Chr11 12715180 G-A 0 0 Single Base Substitution 0 Homo FN3664-S Chr11 18713895 18713897 0 0 Deletion 2 frameshift_variant HET LOC_Os11g31840 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3664-S Chr11 21351857 21351890 0 0 Deletion 33 HET FN3664-S Chr11 26129070 T-A 0 0 Single Base Substitution 0 HET FN3664-S Chr11 5994556 5994561 0 0 Deletion 5 Homo FN3664-S Chr12 14315179 C-T 0 0 Single Base Substitution 0 HET FN3664-S Chr12 18521479 Chr9 1654382 0 Translocation 0 LOC_Os12g30824 terpene synthase, putative, expressed FN3664-S Chr12 22212635 22212636 0 0 Deletion 1 HET FN3664-S Chr12 324082 324084 0 0 Deletion 2 Homo FN3664-S Chr12 326506 A-T 0 0 Single Base Substitution 0 Homo FN3664-S Chr12 326515 A-G 0 0 Single Base Substitution 0 Homo FN3664-S Chr12 4505540 T-C 0 0 Single Base Substitution 0 Homo FN3664-S Chr12 9856110 9856110 0 0 Insertion 1 HET FN3664-S Chr2 18935512 G-C 0 0 Single Base Substitution 0 Homo FN3664-S Chr2 20697209 20697211 0 0 Deletion 2 HET FN3664-S Chr2 31327455 31327455 0 0 Insertion 1 HET FN3664-S Chr3 12959400 12959416 0 0 Deletion 16 Homo FN3664-S Chr3 25967591 25967593 0 0 Deletion 2 Homo FN3664-S Chr3 30360194 A-G 0 0 Single Base Substitution 0 HET FN3664-S Chr3 3124275 3124279 0 0 Deletion 4 Homo FN3664-S Chr4 23944044 C-T 0 0 Single Base Substitution 0 HET FN3664-S Chr4 27335682 T-A 0 0 Single Base Substitution 0 HET FN3664-S Chr4 2824948 G-A 0 0 Single Base Substitution 0 HET FN3664-S Chr4 6601743 G-A 0 0 Single Base Substitution 0 HET FN3664-S Chr5 15262473 15266391 0 0 Inversion 0 LOC_Os05g26230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15262473 15266391 0 0 Inversion 0 LOC_Os05g26240 PROLM1 - Prolamin precursor, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26240 PROLM1 - Prolamin precursor, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26250 PROLM3 - Prolamin precursor, putative, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26280 retrotransposon protein, putative, Ty3-gypsy subclass FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26300 retrotransposon protein, putative, unclassified, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26340 retrotransposon protein, putative, Ty3-gypsy subclass FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26350 PROLM4 - Prolamin precursor, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26359 PROLM6 - Prolamin precursor, putative, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26368 prolamin precursor, putative, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26377 PROLM9 - Prolamin precursor, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26386 prolamin precursor, putative, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26400 prolamin precursor, putative, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26440 PROLM10 - Prolamin precursor, putative, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26450 retrotransposon protein, putative, unclassified FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26460 PROLM11 - Prolamin precursor, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26480 PROLM12 - Prolamin precursor, putative, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26490 PROLM13 - Prolamin precursor, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26520 transposon protein, putative, unclassified, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26530 retrotransposon protein, putative, Ty3-gypsy subclass FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26540 retrotransposon protein, putative, unclassified FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26550 retrotransposon protein, putative, unclassified FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26560 retrotransposon protein, putative, Ty3-gypsy subclass FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26564 retrotransposon protein, putative, Ty3-gypsy subclass FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26570 retrotransposon protein, putative, unclassified, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26580 retrotransposon protein, putative, unclassified, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26590 retrotransposon protein, putative, unclassified, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26610 expressed protein FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26620 PROLM14 - Prolamin precursor, putative, expressed FN3664-S Chr5 15264001 15473000 0 0 Deletion 208999 LOC_Os05g26630 expressed protein FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26660 NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26670 expressed protein FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26680 retrotransposon protein, putative, unclassified, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26690 PROLM15 - Prolamin precursor, putative, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26700 hypothetical protein FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26710 retrotransposon protein, putative, unclassified FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26720 PROLM16 - Prolamin precursor, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26730 retrotransposon protein, putative, LINE subclass, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26740 retrotransposon protein, putative, unclassified, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26750 PROLM17 - Prolamin precursor, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26760 expressed protein FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26770 PROLM18 - Prolamin precursor, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26780 retrotransposon protein, putative, unclassified, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26790 retrotransposon protein, putative, unclassified, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26800 retrotransposon protein, putative, unclassified, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26820 CAMK_KIN1/SNF1/Nim1_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26830 expressed protein FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26840 permease domain containing protein, putative, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26850 hypothetical protein FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26860 expressed protein FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26870 CAMK_KIN1/SNF1/Nim1_like.21 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN3664-S Chr5 15481001 15617000 0 0 Deletion 135999 LOC_Os05g26890 G-protein alpha subunit, putative, expressed FN3664-S Chr5 25659693 25659693 0 0 Insertion 2 HET FN3664-S Chr5 27036903 C-A 0 0 Single Base Substitution 0 Homo FN3664-S Chr5 8667222 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g15280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr6 14356532 C-T 0 0 Single Base Substitution 0 HET FN3664-S Chr6 14715432 14715433 0 0 Deletion 1 HET FN3664-S Chr6 15489823 G-A 0 0 Single Base Substitution 0 HET FN3664-S Chr6 20565754 Chr3 23167128 0 Translocation 0 LOC_Os03g41700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3664-S Chr6 27996549 C-T 0 0 Single Base Substitution 0 Homo FN3664-S Chr7 13196716 C-A 0 0 Single Base Substitution 0 Homo FN3664-S Chr7 24898569 24898570 0 0 Deletion 1 HET FN3664-S Chr7 27208430 G-A 0 0 Single Base Substitution 0 HET FN3664-S Chr7 462462 T-A 0 0 Single Base Substitution 0 HET FN3664-S Chr7 959249 Chr5 28724711 0 Translocation 0 LOC_Os05g50120 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed FN3664-S Chr7 959249 Chr5 28724711 0 Translocation 0 LOC_Os07g02650 retrotransposon protein, putative, unclassified, expressed FN3664-S Chr8 12081048 12081057 0 0 Deletion 9 inframe_deletion Homo LOC_Os08g20160 SWIM zinc finger family protein, putative, expressed FN3664-S Chr8 17661295 17661298 0 0 Deletion 3 HET FN3664-S Chr8 3818340 3954499 0 0 Inversion 0 FN3664-S Chr8 3818347 3954498 0 0 Inversion 0 FN3664-S Chr8 4960220 G-A 0 0 Single Base Substitution 0 HET FN3664-S Chr8 5075884 5075906 0 0 Deletion 22 Homo FN3664-S Chr8 8786113 C-T 0 0 Single Base Substitution 0 HET FN3664-S Chr9 11656895 C-G 0 0 Single Base Substitution 0 HET FN3664-S Chr9 20593320 20593322 0 0 Deletion 2 HET FN3664-S Chr9 5534964 5605166 0 0 Inversion 0 FN3664-S Chr9 5534977 5605185 0 0 Inversion 0