FN3679-S Chr1 1300830 1300837 0 0 Deletion 7 HET FN3679-S Chr1 35197091 T-C 0 0 Single Base Substitution 0 HET FN3679-S Chr1 3951643 3951645 0 0 Deletion 2 HET FN3679-S Chr1 4466197 4466199 0 0 Deletion 2 Homo FN3679-S Chr1 5943189 5943189 0 0 Insertion 281 HET FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11520 RING-H2 finger protein, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11550 TCP family transcription factor, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11570 GDSL-like lipase/acylhydrolase, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11580 bromodomain containing protein, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11590 uncharacterized protein HI0077, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11600 expressed protein FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11620 GDSL-like lipase/acylhydrolase, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11640 expressed protein FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11650 GDSL-like lipase/acylhydrolase, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11660 GDSL-like lipase/acylhydrolase, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11670 OsSCP2 - Putative Serine Carboxypeptidase homologue, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11680 transposon protein, putative, unclassified, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11690 expressed protein FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11700 GDSL-like lipase/acylhydrolase, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11704 hypothetical protein FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11710 GDSL-like lipase/acylhydrolase, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11720 transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11730 GDSL-like lipase/acylhydrolase, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11740 GDSL-like lipase/acylhydrolase, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11750 GDSL-like lipase/acylhydrolase, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11760 GDSL-like lipase/acylhydrolase, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11770 expressed protein FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11780 expressed protein FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11790 GDSL-like lipase/acylhydrolase, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11800 retrotransposon protein, putative, unclassified, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11810 powdery mildew resistant protein 5, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11820 expressed protein FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11830 oryzain alpha chain precursor, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11840 xylem cysteine proteinase 2 precursor, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11850 expressed protein FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11860 DJ-1 family protein, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11870 expressed protein FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11880 DJ-1 family protein, putative, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11900 hhH-GPD superfamily base excision DNA repair protein, expressed FN3679-S Chr1 6195001 6466000 0 0 Deletion 270999 LOC_Os01g11910 basic helix-loop-helix, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g11920 retrotransposon protein, putative, unclassified, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g11940 osFTL1 FT-Like1 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g11946 ABC transporter, ATP-binding protein, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g11952 histone-lysine N-methyltransferase ATX5, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g11960 histone-lysine N-methyltransferase ATX5, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g11970 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g11980 SFT2, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g11990 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12000 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12010 hypothetical protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12020 LTPL18 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12030 endoglucanase precursor, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12040 transposon protein, putative, unclassified, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12060 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12070 endoglucanase precursor, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12080 plant-specific domain TIGR01589 family protein, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12090 ribosomal protein S6 family protein, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12100 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12110 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12120 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12130 nodulin MtN3 family protein, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12140 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12150 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12160 OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12170 retrotransposon protein, putative, unclassified, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12180 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12190 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12200 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12210 aluminum-activated malate transporter, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12220 uncharacterized protein family UPF0016 domain containing protein, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12230 peptidase C45, acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12240 hypothetical protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12250 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12260 vacuolar ATP synthase subunit E, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12270 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12280 hAT dimerisation domain-containing protein, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12290 S-locus lectin protein kinase family protein, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12304 esterase, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12310 histone deacetylase 19, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12320 GDSL-like lipase/acylhydrolase, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12330 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12340 retrotransposon protein, putative, unclassified, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12350 retrotransposon protein, putative, unclassified, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12360 retrotransposon protein, putative, unclassified, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12374 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12381 GDSL-like lipase/acylhydrolase, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12390 inactive receptor kinase At2g26730 precursor, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12400 S-locus lectin protein kinase family protein, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12410 receptor-like protein kinase, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12420 receptor-like protein kinase, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12430 receptor-like protein kinase, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12440 AP2 domain containing protein, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12460 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12464 CHCH domain containing protein, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12470 mitochondrial carrier protein, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12480 expressed protein FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12490 flavin monooxygenase, putative, expressed FN3679-S Chr1 6480001 6865000 0 0 Deletion 384999 LOC_Os01g12500 expressed protein FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12510 expressed protein FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12520 mitochondrial carrier protein, putative, expressed FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12530 smr domain containing protein, expressed FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12540 GTPase of unknown function domain containing protein, putative, expressed FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12550 expressed protein FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12560 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12570 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12580 late embryogenesis abundant protein, putative, expressed FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12590 retrotransposon protein, putative, unclassified, expressed FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12600 retrotransposon protein, putative, unclassified, expressed FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12610 expressed protein FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12630 retrotransposon protein, putative, unclassified FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12640 expressed protein FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12650 reticulon domain containing protein, putative, expressed FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12660 AAA-type ATPase family protein, putative, expressed FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12670 expressed protein FN3679-S Chr1 6871001 6999000 0 0 Deletion 127999 LOC_Os01g12680 C4-dicarboxylate transporter/malic acid transport protein, expressed FN3679-S Chr10 10345256 G-A 0 0 Single Base Substitution 0 HET FN3679-S Chr10 11626119 11626120 0 0 Deletion 1 HET FN3679-S Chr10 11633835 11633843 0 0 Deletion 8 frameshift_variant HET LOC_Os10g22460 expressed protein FN3679-S Chr10 12522726 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os10g24420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3679-S Chr10 13072854 G-A 0 0 Single Base Substitution 0 HET FN3679-S Chr10 4082823 G-A 0 0 Single Base Substitution 0 HET FN3679-S Chr11 16561518 G-C 0 0 Single Base Substitution 0 Homo FN3679-S Chr11 188043 188046 0 0 Deletion 3 HET FN3679-S Chr11 25058816 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g41730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3679-S Chr11 27654129 27672413 0 0 Inversion 0 LOC_Os11g45710 Os11bglu36 SFR2 homologue, expressed FN3679-S Chr11 27654129 27672413 0 0 Inversion 0 LOC_Os11g45740 MYB family transcription factor, putative, expressed FN3679-S Chr11 27654158 27672463 0 0 Inversion 0 LOC_Os11g45710 Os11bglu36 SFR2 homologue, expressed FN3679-S Chr11 27654158 27672463 0 0 Inversion 0 LOC_Os11g45740 MYB family transcription factor, putative, expressed FN3679-S Chr12 20997560 C-T 0 0 Single Base Substitution 0 HET FN3679-S Chr12 4228624 G-C 0 0 Single Base Substitution 0 HET FN3679-S Chr2 21082102 A-G 0 0 Single Base Substitution 0 HET FN3679-S Chr2 28185138 28185138 0 0 Insertion 1 HET FN3679-S Chr2 8224809 G-A 0 0 Single Base Substitution 0 Homo FN3679-S Chr3 16903637 G-C 0 0 Single Base Substitution 0 Homo FN3679-S Chr3 17335820 17335820 0 0 Insertion 2 HET FN3679-S Chr3 24210432 T-C 0 0 Single Base Substitution 0 Homo FN3679-S Chr3 26928145 C-T 0 0 Single Base Substitution 0 Homo FN3679-S Chr3 28171880 28171881 0 0 Deletion 1 frameshift_variant HET LOC_Os03g49500 ethylene receptor, putative, expressed FN3679-S Chr3 33651096 T-C 0 0 Single Base Substitution 0 HET FN3679-S Chr3 34295198 A-G 0 0 Single Base Substitution 0 HET FN3679-S Chr3 6304221 6323277 0 0 Inversion 0 LOC_Os03g12030 3-ketoacyl-CoA synthase, putative, expressed FN3679-S Chr3 6304221 6323277 0 0 Inversion 0 LOC_Os03g12050 expressed protein FN3679-S Chr3 6304238 6323285 0 0 Inversion 0 LOC_Os03g12030 3-ketoacyl-CoA synthase, putative, expressed FN3679-S Chr3 6304238 6323285 0 0 Inversion 0 LOC_Os03g12050 expressed protein FN3679-S Chr3 7537959 G-A 0 0 Single Base Substitution 0 HET FN3679-S Chr4 12372415 G-A 0 0 Single Base Substitution 0 HET FN3679-S Chr4 14474520 14474521 0 0 Deletion 1 HET FN3679-S Chr4 19293177 19293177 0 0 Insertion 3 HET FN3679-S Chr4 25490943 25490944 0 0 Deletion 1 Homo FN3679-S Chr4 27831752 27831780 0 0 Deletion 28 HET FN3679-S Chr4 29894349 29894349 0 0 Insertion 6 HET FN3679-S Chr5 15605207 Chr1 17720060 0 Translocation 0 FN3679-S Chr5 15605217 Chr1 17704526 0 Translocation 0 LOC_Os01g32280 transmembrane protein, putative, expressed FN3679-S Chr5 15845504 C-T 0 0 Single Base Substitution 0 HET FN3679-S Chr5 17736053 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g30610 retrotransposon protein, putative, unclassified, expressed FN3679-S Chr5 27723612 27723621 0 0 Deletion 9 HET FN3679-S Chr5 29687352 29687353 0 0 Deletion 1 HET FN3679-S Chr5 29775827 29775827 0 0 Insertion 1 frameshift_variant HET LOC_Os05g51890 retrotransposon protein, putative, unclassified, expressed FN3679-S Chr5 414944 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g01690 expressed protein FN3679-S Chr6 11107823 T-C 0 0 Single Base Substitution 0 HET FN3679-S Chr6 13528212 A-G 0 0 Single Base Substitution 0 HET FN3679-S Chr6 25391518 C-A 0 0 Single Base Substitution 0 HET FN3679-S Chr6 26354404 G-A 0 0 Single Base Substitution 0 Homo FN3679-S Chr6 26568781 G-A 0 0 Single Base Substitution 0 HET FN3679-S Chr6 26733005 A-T 0 0 Single Base Substitution 0 HET FN3679-S Chr6 5496827 C-A 0 0 Single Base Substitution 0 Homo FN3679-S Chr6 7189165 7189183 0 0 Deletion 18 HET FN3679-S Chr7 11308437 11308438 0 0 Deletion 1 HET FN3679-S Chr7 2256048 A-C 0 0 Single Base Substitution 0 HET FN3679-S Chr7 28366635 28366642 0 0 Deletion 7 frameshift_variant HET LOC_Os07g47440 retrotransposon protein, putative, unclassified, expressed FN3679-S Chr7 29023159 C-T 0 0 Single Base Substitution 0 HET FN3679-S Chr8 11631622 11631623 0 0 Deletion 1 HET FN3679-S Chr8 1351904 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g03030 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3679-S Chr8 15873733 15873734 0 0 Deletion 1 frameshift_variant HET LOC_Os08g26100 hypothetical protein FN3679-S Chr8 17510117 17510118 0 0 Deletion 1 HET FN3679-S Chr8 18822109 C-T 0 0 Single Base Substitution 0 HET FN3679-S Chr8 20501964 C-T 0 0 Single Base Substitution 0 HET FN3679-S Chr8 25127247 25127247 0 0 Insertion 67 HET FN3679-S Chr8 25229551 Chr2 27366667 0 Translocation 0 FN3679-S Chr8 25232016 Chr2 27366661 0 Translocation 0 FN3679-S Chr8 26401549 A-G 0 0 Single Base Substitution 0 HET FN3679-S Chr8 3232481 3232481 0 0 Insertion 3 HET FN3679-S Chr8 3369910 T-G 0 0 Single Base Substitution 0 HET FN3679-S Chr8 6119525 A-G 0 0 Single Base Substitution 0 HET FN3679-S Chr9 12720336 G-A 0 0 Single Base Substitution 0 HET FN3679-S Chr9 19428417 19428427 0 0 Deletion 10 frameshift_variant Homo LOC_Os09g32540 expressed protein FN3679-S Chr9 21577067 A-G 0 0 Single Base Substitution 0 HET FN3679-S Chr9 22450266 22450274 0 0 Deletion 8 HET FN3679-S Chr9 3197569 C-T 0 0 Single Base Substitution 0 HET