FN369-S Chr1 21109752 21109752 0 0 Insertion 1 FN369-S Chr1 27782763 27782763 0 0 Insertion 2 FN369-S Chr1 35633897 35663588 0 0 Deletion 29691 LOC_Os01g61610 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN369-S Chr1 35633897 35663588 0 0 Deletion 29691 LOC_Os01g61620 protein kinase family protein, putative, expressed FN369-S Chr1 35633897 35663588 0 0 Deletion 29691 LOC_Os01g61630 expressed protein FN369-S Chr1 35633897 35663588 0 0 Deletion 29691 LOC_Os01g61640 NLI interacting factor-like phosphatase, putative, expressed FN369-S Chr1 7083788 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN369-S Chr10 13946149 13946167 0 0 Deletion 18 FN369-S Chr10 18950549 18950550 0 0 Deletion 1 FN369-S Chr10 3206423 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g06250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr11 10526323 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN369-S Chr11 12796622 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN369-S Chr11 16137483 16137489 0 0 Deletion 6 LOC_Os11g28070 retrotransposon protein, putative, unclassified FN369-S Chr11 26929026 26929027 0 0 Deletion 1 LOC_Os11g44530 retrotransposon protein, putative, unclassified, expressed FN369-S Chr11 9415292 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN369-S Chr12 10034894 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN369-S Chr12 16566157 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN369-S Chr12 18431894 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN369-S Chr12 18804177 18804194 0 0 Deletion 17 FN369-S Chr12 18804700 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN369-S Chr12 24242495 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN369-S Chr12 26402118 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN369-S Chr12 5143181 6229526 0 0 Inversion 1086345 LOC_Os12g09739 pollen signalling protein with adenylyl cyclase activity, putative, expressed FN369-S Chr12 5143224 Chr11 1270190 0 Translocation 0 LOC_Os11g03370 no apical meristem protein, putative, expressed FN369-S Chr12 5143224 Chr11 1270190 0 Translocation 0 LOC_Os12g09739 pollen signalling protein with adenylyl cyclase activity, putative, expressed FN369-S Chr12 6926405 6926417 0 0 Deletion 12 FN369-S Chr12 9779744 10277549 0 0 Inversion 497805 LOC_Os12g17080 pentatricopeptide, putative, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17080 pentatricopeptide, putative, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17090 stripe rust resistance protein Yr10, putative, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17100 retrotransposon protein, putative, Ty1-copia subclass, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17110 retrotransposon protein, putative, Ty1-copia subclass FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17120 retrotransposon protein, putative, Ty1-copia subclass, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17130 expressed protein FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17140 mla1, putative, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17150 expressed protein FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17160 flavonol sulfotransferase, putative, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17190 retrotransposon protein, putative, unclassified, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17200 hypothetical protein FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17230 expressed protein FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17240 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17250 expressed protein FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17270 transposon protein, putative, CACTA, En/Spm sub-class FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17280 expressed protein FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17310 prefoldin, putative, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17320 polyprenyl synthetase, putative, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17330 conserved hypothetical protein FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17340 CC-NBS-LRR resistance protein MLA13, putative, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17350 retrotransposon protein, putative, unclassified, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17360 retrotransposon protein, putative, unclassified, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17370 expressed protein FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17390 retrotransposon protein, putative, unclassified, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17400 retrotransposon protein, putative, unclassified FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17410 NB-ARC domain containing protein, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17420 resistance protein, putative, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17424 retrotransposon protein, putative, unclassified FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17430 NBS-LRR disease resistance protein, putative, expressed FN369-S Chr12 9780001 9999000 0 0 Deletion 219000 LOC_Os12g17440 retrotransposon protein, putative, unclassified FN369-S Chr12 9999384 10277549 0 0 Inversion 278165 FN369-S Chr2 11218389 11218390 0 0 Deletion 1 FN369-S Chr2 13485243 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN369-S Chr2 19811708 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g33340 retrotransposon protein, putative, Ty1-copia subclass, expressed FN369-S Chr2 2223974 2777995 0 0 Inversion 554021 LOC_Os02g04820 retrotransposon protein, putative, unclassified, expressed FN369-S Chr2 2223974 2777995 0 0 Inversion 554021 LOC_Os02g05680 apoptosis-inducing factor 2, putative, expressed FN369-S Chr2 2223988 2778000 0 0 Inversion 554012 LOC_Os02g04820 retrotransposon protein, putative, unclassified, expressed FN369-S Chr2 2223988 2778000 0 0 Inversion 554012 LOC_Os02g05680 apoptosis-inducing factor 2, putative, expressed FN369-S Chr2 2309783 2309784 0 0 Deletion 1 FN369-S Chr2 27936918 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN369-S Chr2 27936924 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN369-S Chr2 7189071 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN369-S Chr3 21399439 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN369-S Chr3 24411460 24411470 0 0 Deletion 10 FN369-S Chr3 27362661 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN369-S Chr3 30194412 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN369-S Chr3 3312217 3312217 0 0 Insertion 1 FN369-S Chr3 9863238 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN369-S Chr4 1325723 1325733 0 0 Deletion 10 FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04360 expressed protein FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04370 retrotransposon protein, putative, unclassified FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04380 retrotransposon protein, putative, unclassified FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04390 retrotransposon protein, putative, unclassified, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04400 FAR1 family protein, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04410 expressed protein FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04440 retrotransposon protein, putative, unclassified FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04460 retrotransposon protein, putative, unclassified FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04470 retrotransposon, putative, centromere-specific, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04480 retrotransposon protein, putative, unclassified, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04500 retrotransposon protein, putative, unclassified, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04540 retrotransposon, putative, centromere-specific, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04574 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04600 retrotransposon protein, putative, Ty3-gypsy subclass FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04610 retrotransposon protein, putative, Ty3-gypsy subclass FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04620 retrotransposon protein, putative, Ty3-gypsy subclass FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04640 decarboxylase, putative, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04650 hypothetical protein FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04660 expressed protein FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04670 protein kinase, putative, expressed FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04680 expressed protein FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04690 legume lectins beta domain containing protein, putative FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04700 retrotransposon protein, putative, unclassified FN369-S Chr4 2050001 2265000 0 0 Deletion 215000 LOC_Os04g04710 retrotransposon protein, putative, unclassified, expressed FN369-S Chr4 653372 2050060 0 0 Inversion 1396688 FN369-S Chr4 9898730 A-G 0 0 Single Base Substitution 0 INTRON HET FN369-S Chr5 10520036 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN369-S Chr5 14200338 T-G 0 0 Single Base Substitution 0 INTRON HET FN369-S Chr5 15257521 15257538 0 0 Deletion 17 FN369-S Chr5 27405988 27405998 0 0 Deletion 10 FN369-S Chr5 27798790 27798791 0 0 Deletion 1 FN369-S Chr5 28370325 28370337 0 0 Deletion 12 FN369-S Chr5 3830368 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN369-S Chr6 10776806 10776815 0 0 Deletion 9 FN369-S Chr6 15066808 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN369-S Chr6 26575902 26575910 0 0 Deletion 8 FN369-S Chr6 30066308 30066313 0 0 Deletion 5 LOC_Os06g49690 expressed protein FN369-S Chr7 1065828 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN369-S Chr7 16749123 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g28614 expressed protein FN369-S Chr7 16946291 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g28900 PPR repeat domain containing protein, putative, expressed FN369-S Chr7 9849918 9849923 0 0 Deletion 5 LOC_Os07g16780 retrotransposon protein, putative, Ty3-gypsy subclass FN369-S Chr8 23931351 23931358 0 0 Deletion 7 FN369-S Chr8 23987722 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN369-S Chr9 12081052 T-C 0 0 Single Base Substitution 0 INTRON HET FN369-S Chr9 14705826 14705828 0 0 Deletion 2 FN369-S Chr9 9120978 G-A 0 0 Single Base Substitution 0 INTRON HET