FN3715-S Chr1 10370889 10370891 0 0 Deletion 2 HET FN3715-S Chr1 14932021 G-A 0 0 Single Base Substitution 0 HET FN3715-S Chr1 17433860 18302220 0 0 Inversion 0 LOC_Os01g33230 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed FN3715-S Chr1 17433867 18306961 0 0 Inversion 0 LOC_Os01g33240 transposon protein, putative, unclassified, expressed FN3715-S Chr1 1895463 1895732 0 0 Inversion 0 FN3715-S Chr1 20151602 A-G 0 0 Single Base Substitution 0 HET FN3715-S Chr1 20287439 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g36550 protein kinase family protein, putative, expressed FN3715-S Chr1 26013917 T-C 0 0 Single Base Substitution 0 HET FN3715-S Chr1 35960229 G-A 0 0 Single Base Substitution 0 Homo FN3715-S Chr1 39564825 A-T 0 0 Single Base Substitution 0 HET FN3715-S Chr1 4982251 5159122 0 0 Inversion 0 LOC_Os01g09670 pollen-specific protein SF21, putative, expressed FN3715-S Chr1 4982254 5159127 0 0 Inversion 0 LOC_Os01g09670 pollen-specific protein SF21, putative, expressed FN3715-S Chr1 7463146 A-G 0 0 Single Base Substitution 0 HET FN3715-S Chr1 8333217 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g14860 CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed FN3715-S Chr10 15911545 C-A 0 0 Single Base Substitution 0 HET FN3715-S Chr10 18026260 C-A 0 0 Single Base Substitution 0 HET FN3715-S Chr10 20986732 C-T 0 0 Single Base Substitution 0 HET FN3715-S Chr10 22815472 T-A 0 0 Single Base Substitution 0 HET FN3715-S Chr10 327627 Chr4 11184837 0 Translocation 0 FN3715-S Chr10 4437110 C-G 0 0 Single Base Substitution 0 HET FN3715-S Chr11 12690001 12706000 0 0 Deletion 15999 LOC_Os11g22100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3715-S Chr11 12690001 12706000 0 0 Deletion 15999 LOC_Os11g22110 retrotransposon, putative, centromere-specific, expressed FN3715-S Chr11 12690001 12706000 0 0 Deletion 15999 LOC_Os11g22120 hypothetical protein FN3715-S Chr11 12690001 12706000 0 0 Deletion 15999 LOC_Os11g22130 retrotransposon, putative, centromere-specific, expressed FN3715-S Chr11 12690001 12706000 0 0 Deletion 15999 LOC_Os11g22140 retrotransposon, putative, centromere-specific FN3715-S Chr11 12690001 12706000 0 0 Deletion 15999 LOC_Os11g22150 retrotransposon protein, putative, unclassified, expressed FN3715-S Chr11 18639097 G-A 0 0 Single Base Substitution 0 HET FN3715-S Chr11 1904348 Chr4 33677755 0 Translocation 0 LOC_Os04g56500 expressed protein FN3715-S Chr11 1904348 Chr4 33677755 0 Translocation 0 LOC_Os11g04520 PP2A regulatory subunit TAP46, putative, expressed FN3715-S Chr11 1905779 Chr1 18302219 0 Translocation 0 LOC_Os01g33230 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed FN3715-S Chr11 1905779 Chr1 18302219 0 Translocation 0 LOC_Os11g04520 PP2A regulatory subunit TAP46, putative, expressed FN3715-S Chr11 19434257 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g32900 retinoblastoma-related protein-like, putative, expressed FN3715-S Chr11 21379748 21379748 0 0 Insertion 22 HET FN3715-S Chr11 23726883 23726898 0 0 Deletion 15 HET FN3715-S Chr11 24049107 24049118 0 0 Deletion 11 HET FN3715-S Chr11 5488045 A-T 0 0 Single Base Substitution 0 HET FN3715-S Chr11 8787501 A-C 0 0 Single Base Substitution 0 HET FN3715-S Chr11 9851443 C-T 0 0 Single Base Substitution 0 Homo FN3715-S Chr12 17923304 17923314 0 0 Deletion 10 Homo FN3715-S Chr12 20969001 20983000 0 0 Deletion 13999 LOC_Os12g34600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3715-S Chr12 20969001 20983000 0 0 Deletion 13999 LOC_Os12g34610 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3715-S Chr12 21842070 T-C 0 0 Single Base Substitution 0 HET FN3715-S Chr12 4728059 4728060 0 0 Deletion 1 HET FN3715-S Chr12 4929817 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g09400 retrotransposon protein, putative, Ty1-copia subclass FN3715-S Chr12 7349008 G-A 0 0 Single Base Substitution 0 HET FN3715-S Chr2 14618543 G-A 0 0 Single Base Substitution 0 HET FN3715-S Chr2 22708085 G-A 0 0 Single Base Substitution 0 HET FN3715-S Chr2 25648139 25648140 0 0 Deletion 1 HET FN3715-S Chr2 26249444 T-C 0 0 Single Base Substitution 0 HET FN3715-S Chr2 27779915 G-T 0 0 Single Base Substitution 0 HET FN3715-S Chr2 29332827 T-A 0 0 Single Base Substitution 0 HET FN3715-S Chr2 32334814 32334822 0 0 Deletion 8 Homo FN3715-S Chr2 33527278 33527287 0 0 Deletion 9 HET FN3715-S Chr2 3959001 4002000 0 0 Deletion 42999 LOC_Os02g07640 expressed protein FN3715-S Chr2 3959001 4002000 0 0 Deletion 42999 LOC_Os02g07650 zinc-binding protein, putative, expressed FN3715-S Chr2 3959001 4002000 0 0 Deletion 42999 LOC_Os02g07654 expressed protein FN3715-S Chr2 3959001 4002000 0 0 Deletion 42999 LOC_Os02g07670 URED, putative, expressed FN3715-S Chr2 3959001 4002000 0 0 Deletion 42999 LOC_Os02g07680 cytochrome P450, putative, expressed FN3715-S Chr3 10239492 G-A 0 0 Single Base Substitution 0 HET FN3715-S Chr3 14884106 14884116 0 0 Deletion 10 Homo FN3715-S Chr3 19418343 G-T 0 0 Single Base Substitution 0 Homo FN3715-S Chr3 21107928 21108143 0 0 Inversion 0 FN3715-S Chr3 25176740 A-G 0 0 Single Base Substitution 0 Homo FN3715-S Chr3 4184679 T-A 0 0 Single Base Substitution 0 HET FN3715-S Chr3 5282317 5282319 0 0 Deletion 2 HET FN3715-S Chr3 9889227 9889239 0 0 Deletion 12 HET FN3715-S Chr4 11339432 T-A 0 0 Single Base Substitution 0 HET FN3715-S Chr4 236537 A-G 0 0 Single Base Substitution 0 Homo FN3715-S Chr4 32705973 32705985 0 0 Deletion 12 HET FN3715-S Chr4 33677754 Chr1 18306966 0 Translocation 0 LOC_Os01g33240 transposon protein, putative, unclassified, expressed FN3715-S Chr4 33677754 Chr1 18306966 0 Translocation 0 LOC_Os04g56500 expressed protein FN3715-S Chr4 4271371 C-A 0 0 Single Base Substitution 0 HET FN3715-S Chr4 7082544 7082545 0 0 Deletion 1 frameshift_variant HET LOC_Os04g12820 expressed protein FN3715-S Chr4 8605518 G-A 0 0 Single Base Substitution 0 HET FN3715-S Chr5 11533062 C-T 0 0 Single Base Substitution 0 Homo FN3715-S Chr5 29249791 29249791 0 0 Insertion 1 Homo FN3715-S Chr5 89936 G-A 0 0 Single Base Substitution 0 HET FN3715-S Chr6 14331446 A-G 0 0 Single Base Substitution 0 HET FN3715-S Chr6 17499979 17499982 0 0 Deletion 3 Homo FN3715-S Chr6 17639993 T-C 0 0 Single Base Substitution 0 HET FN3715-S Chr6 23088753 23088753 0 0 Insertion 1 HET FN3715-S Chr6 24491556 25148078 0 0 Inversion 0 FN3715-S Chr6 24491571 25148127 0 0 Inversion 0 FN3715-S Chr6 25210040 C-A 0 0 Single Base Substitution 0 HET FN3715-S Chr6 25210041 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g41990 M16 domain containing zinc peptidase, putative, expressed FN3715-S Chr6 3141570 C-G 0 0 Single Base Substitution 0 Homo FN3715-S Chr6 3768167 3768179 0 0 Deletion 12 HET FN3715-S Chr6 994255 G-A 0 0 Single Base Substitution 0 Homo FN3715-S Chr7 10724598 10724754 0 0 Inversion 0 LOC_Os07g18120 aldehyde oxidase, putative, expressed FN3715-S Chr7 1279555 1870094 0 0 Inversion 0 FN3715-S Chr7 1279559 1870095 0 0 Inversion 0 FN3715-S Chr7 1602539 C-T 0 0 Single Base Substitution 0 HET FN3715-S Chr7 20211383 A-T 0 0 Single Base Substitution 0 Homo FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02150 3-5 exonuclease domain-containing protein, putative, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02170 3-5 exonuclease domain-containing protein, putative, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02180 3-5 exonuclease domain-containing protein, putative, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02192 expressed protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02200 plastocyanin-like domain containing protein, putative, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02210 eukaryotic translation initiation factor 5A, putative, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02230 retrotransposon protein, putative, unclassified, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02240 transcription factor X1, putative, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02250 expressed protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02260 expressed protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02270 expressed protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02280 pentatricopeptide, putative, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02290 OsFBX208 - F-box domain containing protein, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02300 tetratricopeptide repeat domain containing protein, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02330 protein phosphatase 2C, putative, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02340 expressed protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02350 casein kinase II subunit alpha-2, putative, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02360 expressed protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02370 expressed protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02380 expressed protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02390 hypothetical protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02400 expressed protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02410 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02420 expressed protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02430 expressed protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02440 peroxidase precursor, putative, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02450 receptor-like protein kinase 2 precursor, putative, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02460 expressed protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02470 expressed protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02480 expressed protein FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02490 retrotransposon protein, putative, unclassified, expressed FN3715-S Chr7 688001 874000 0 0 Deletion 185999 LOC_Os07g02500 expressed protein FN3715-S Chr7 8546411 C-T 0 0 Single Base Substitution 0 Homo FN3715-S Chr7 885001 955000 0 0 Deletion 69999 LOC_Os07g02520 expressed protein FN3715-S Chr7 885001 955000 0 0 Deletion 69999 LOC_Os07g02530 hypothetical protein FN3715-S Chr7 885001 955000 0 0 Deletion 69999 LOC_Os07g02540 HLS, putative, expressed FN3715-S Chr7 885001 955000 0 0 Deletion 69999 LOC_Os07g02550 expressed protein FN3715-S Chr7 885001 955000 0 0 Deletion 69999 LOC_Os07g02560 NB-ARC domain containing protein, expressed FN3715-S Chr7 885001 955000 0 0 Deletion 69999 LOC_Os07g02570 NB-ARC domain containing protein, expressed FN3715-S Chr7 885001 955000 0 0 Deletion 69999 LOC_Os07g02580 ubiquinone oxidoreductase, putative, expressed FN3715-S Chr7 885001 955000 0 0 Deletion 69999 LOC_Os07g02590 expressed protein FN3715-S Chr7 885001 955000 0 0 Deletion 69999 LOC_Os07g02600 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3715-S Chr7 885001 955000 0 0 Deletion 69999 LOC_Os07g02610 expressed protein FN3715-S Chr7 885001 955000 0 0 Deletion 69999 LOC_Os07g02620 NB-ARC domain containing protein, expressed FN3715-S Chr7 885001 955000 0 0 Deletion 69999 LOC_Os07g02624 expressed protein FN3715-S Chr7 885001 955000 0 0 Deletion 69999 LOC_Os07g02630 expressed protein FN3715-S Chr8 10521500 10521504 0 0 Deletion 4 frameshift_variant HET LOC_Os08g17170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3715-S Chr8 16227174 G-C 0 0 Single Base Substitution 0 HET FN3715-S Chr8 17986257 G-A 0 0 Single Base Substitution 0 HET FN3715-S Chr8 19390030 T-A 0 0 Single Base Substitution 0 HET FN3715-S Chr8 20575137 20575139 0 0 Deletion 2 HET FN3715-S Chr8 25524893 25524900 0 0 Deletion 7 frameshift_variant HET LOC_Os08g40310 transposon protein, putative, unclassified, expressed FN3715-S Chr8 26190001 26190010 0 0 Deletion 9 HET FN3715-S Chr8 26831456 26831458 0 0 Deletion 2 HET FN3715-S Chr8 27699635 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os08g44000 uncharacterized protein ycf39, putative, expressed FN3715-S Chr8 8187614 T-C 0 0 Single Base Substitution 0 HET FN3715-S Chr9 17290128 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g28400 alpha-amylase precursor, putative, expressed FN3715-S Chr9 4867313 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g09100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3715-S Chr9 9676857 G-T 0 0 Single Base Substitution 0 Homo