FN3758-S Chr1 10348131 10348131 0 0 Insertion 11 HET FN3758-S Chr1 23655638 23655652 0 0 Deletion 14 Homo FN3758-S Chr1 32488012 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g56370 wax synthase, putative, expressed FN3758-S Chr10 1331061 Chr7 28606608 0 Translocation 0 LOC_Os07g47890 retrotransposon protein, putative, unclassified FN3758-S Chr10 1331061 Chr7 28606608 0 Translocation 0 LOC_Os10g03150 retrotransposon protein, putative, unclassified FN3758-S Chr10 3469150 C-T 0 0 Single Base Substitution 0 Homo FN3758-S Chr10 5375191 Chr3 12796599 0 Translocation 0 LOC_Os03g22330 blue-light photoreceptor PHR2, putative, expressed FN3758-S Chr10 5375747 Chr3 12796598 0 Translocation 0 LOC_Os03g22330 blue-light photoreceptor PHR2, putative, expressed FN3758-S Chr10 9368367 A-G 0 0 Single Base Substitution 0 Homo FN3758-S Chr11 11508165 Chr8 19974189 0 Translocation 0 LOC_Os08g32220 retrotransposon protein, putative, Ty3-gypsy subclass FN3758-S Chr11 11508165 Chr8 19974189 0 Translocation 0 LOC_Os11g20000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12796001 12823000 0 0 Deletion 26999 LOC_Os11g22330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12796001 12823000 0 0 Deletion 26999 LOC_Os11g22336 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12796001 12823000 0 0 Deletion 26999 LOC_Os11g22342 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12796001 12823000 0 0 Deletion 26999 LOC_Os11g22350 white-brown complex homolog protein, putative, expressed FN3758-S Chr11 12796001 12823000 0 0 Deletion 26999 LOC_Os11g22360 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22380 retrotransposon protein, putative, unclassified FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22390 retrotransposon protein, putative, unclassified, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22396 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22404 protein phosphatase 2C, putative, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22420 retrotransposon, putative, centromere-specific, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22440 retrotransposon, putative, centromere-specific, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22449 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22460 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22470 retrotransposon, putative, centromere-specific FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22480 retrotransposon, putative, centromere-specific, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22490 hypothetical protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22500 retrotransposon, putative, centromere-specific, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22560 retrotransposon protein, putative, Ty3-gypsy subclass FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22580 retrotransposon protein, putative, unclassified, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22590 retrotransposon protein, putative, Ty1-copia subclass FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22600 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22610 retrotransposon, putative, centromere-specific, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22620 retrotransposon protein, putative, LINE subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22630 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22640 retrotransposon protein, putative, unclassified, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22650 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22660 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22670 retrotransposon protein, putative, unclassified, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22690 retrotransposon protein, putative, unclassified, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22700 retrotransposon protein, putative, unclassified, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22710 retrotransposon protein, putative, unclassified, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22720 retrotransposon protein, putative, Ty3-gypsy subclass FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22730 retrotransposon protein, putative, unclassified FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22740 retrotransposon protein, putative, Ty3-gypsy subclass FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22750 retrotransposon protein, putative, Ty3-gypsy subclass FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22760 hypothetical protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22770 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22780 retrotransposon, putative, centromere-specific, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22800 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22820 retrotransposon protein, putative, unclassified FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22860 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22880 retrotransposon, putative, centromere-specific FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22890 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22920 retrotransposon protein, putative, unclassified, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22950 retrotransposon, putative, centromere-specific, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22960 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22970 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g22980 transposon protein, putative, CACTA, En/Spm sub-class FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g23000 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g23010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g23020 transposon protein, putative, CACTA, En/Spm sub-class FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g23030 expressed protein FN3758-S Chr11 12830001 13254000 0 0 Deletion 423999 LOC_Os11g23040 retrotransposon protein, putative, unclassified, expressed FN3758-S Chr11 13447192 13496490 0 0 Inversion 0 FN3758-S Chr11 17500943 T-C 0 0 Single Base Substitution 0 HET FN3758-S Chr11 23814776 T-G 0 0 Single Base Substitution 0 Homo FN3758-S Chr11 24977834 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g41620 transposon protein, putative, unclassified, expressed FN3758-S Chr11 873688 C-T 0 0 Single Base Substitution 0 HET FN3758-S Chr12 11576825 C-G 0 0 Single Base Substitution 0 HET FN3758-S Chr12 18332201 18332202 0 0 Deletion 1 Homo FN3758-S Chr12 24527926 24527927 0 0 Deletion 1 frameshift_variant HET LOC_Os12g39710 expressed protein FN3758-S Chr12 3533353 3533354 0 0 Deletion 1 frameshift_variant HET LOC_Os12g07190 CBS domain-containing protein, putative, expressed FN3758-S Chr12 9247561 9247563 0 0 Deletion 2 Homo FN3758-S Chr2 4617672 4617676 0 0 Deletion 4 HET FN3758-S Chr3 11466679 11466688 0 0 Deletion 9 HET FN3758-S Chr3 21952716 C-G 0 0 Single Base Substitution 0 HET FN3758-S Chr3 24494539 24494539 0 0 Insertion 2 HET FN3758-S Chr3 3413028 3413031 0 0 Deletion 3 HET FN3758-S Chr3 8613755 C-T 0 0 Single Base Substitution 0 HET FN3758-S Chr4 1787471 C-T 0 0 Single Base Substitution 0 HET FN3758-S Chr4 18205487 C-T 0 0 Single Base Substitution 0 HET FN3758-S Chr4 24942526 25112929 0 0 Inversion 0 LOC_Os04g42130 integral membrane transporter family protein, putative, expressed FN3758-S Chr4 24942526 25112929 0 0 Inversion 0 LOC_Os04g42430 EF hand family protein, putative, expressed FN3758-S Chr4 25112948 25280107 0 0 Inversion 0 LOC_Os04g42430 EF hand family protein, putative, expressed FN3758-S Chr4 3560657 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g06770 argonaute, putative, expressed FN3758-S Chr4 8749036 8749036 0 0 Insertion 1 HET FN3758-S Chr4 9756003 G-A 0 0 Single Base Substitution 0 HET FN3758-S Chr5 2026318 T-A 0 0 Single Base Substitution 0 HET FN3758-S Chr5 23630318 G-A 0 0 Single Base Substitution 0 HET FN3758-S Chr5 26858211 26862000 0 0 Inversion 0 FN3758-S Chr5 26859212 26862005 0 0 Inversion 0 LOC_Os05g46340 expressed protein FN3758-S Chr6 13256873 G-A 0 0 Single Base Substitution 0 HET FN3758-S Chr6 23398482 Chr3 22535157 0 Translocation 0 FN3758-S Chr6 23801288 T-G 0 0 Single Base Substitution 0 HET FN3758-S Chr6 26229075 26259600 0 0 Inversion 0 FN3758-S Chr6 26229861 26259605 0 0 Inversion 0 LOC_Os06g43610 formamidopyrimidine-DNA glycosylase, putative, expressed FN3758-S Chr7 10460797 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os07g17710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3758-S Chr7 10524318 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g17790 retrotransposon protein, putative, Ty3-gypsy subclass FN3758-S Chr7 12817642 G-A 0 0 Single Base Substitution 0 Homo FN3758-S Chr7 15948286 C-T 0 0 Single Base Substitution 0 Homo FN3758-S Chr7 28216500 Chr4 17793219 0 Translocation 0 LOC_Os07g47201 adenyl cyclase, putative, expressed FN3758-S Chr8 13244766 C-T 0 0 Single Base Substitution 0 HET FN3758-S Chr8 16474622 16474623 0 0 Deletion 1 frameshift_variant HET LOC_Os08g26970 retrotransposon protein, putative, unclassified, expressed FN3758-S Chr8 25193353 25193354 0 0 Deletion 1 frameshift_variant HET LOC_Os08g39800 retrotransposon protein, putative, unclassified FN3758-S Chr8 2596687 C-T 0 0 Single Base Substitution 0 Homo FN3758-S Chr9 13587946 13587947 0 0 Deletion 1 HET FN3758-S Chr9 22434275 22434276 0 0 Deletion 1 Homo FN3758-S Chr9 22785139 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g39710 retrotransposon protein, putative, unclassified, expressed FN3758-S Chr9 4160493 4160493 0 0 Insertion 26 HET FN3758-S Chr9 4757267 Chr4 1178866 0 Translocation 0