FN3765-S Chr1 28599146 C-A 0 0 Single Base Substitution 0 Homo FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28430 expressed protein FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28440 retrotransposon protein, putative, Ty1-copia subclass FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28450 hypothetical protein FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28460 expressed protein FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28470 expressed protein FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28480 expressed protein FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28490 ent-kaurene synthase B, chloroplast precursor, putative, expressed FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28500 terpene synthase, N-terminal domain containing protein FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28510 expressed protein FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28520 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28530 terpene synthase, putative, expressed FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28540 expressed protein FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28550 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3765-S Chr11 16369001 16490000 0 0 Deletion 120999 LOC_Os11g28590 retrotransposon protein, putative, Ty1-copia subclass FN3765-S Chr11 16369217 16528230 0 0 Inversion 0 FN3765-S Chr11 17077001 17149000 0 0 Deletion 71999 LOC_Os11g29410 expressed protein FN3765-S Chr11 17077001 17149000 0 0 Deletion 71999 LOC_Os11g29420 LTPL30 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN3765-S Chr11 17077001 17149000 0 0 Deletion 71999 LOC_Os11g29430 expressed protein FN3765-S Chr11 17077001 17149000 0 0 Deletion 71999 LOC_Os11g29440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3765-S Chr11 17077001 17149000 0 0 Deletion 71999 LOC_Os11g29450 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr11 17077001 17149000 0 0 Deletion 71999 LOC_Os11g29470 expressed protein FN3765-S Chr11 17077001 17149000 0 0 Deletion 71999 LOC_Os11g29480 expressed protein FN3765-S Chr11 17077001 17149000 0 0 Deletion 71999 LOC_Os11g29490 plasma membrane ATPase, putative, expressed FN3765-S Chr11 17077001 17149000 0 0 Deletion 71999 LOC_Os11g29500 expressed protein FN3765-S Chr11 17077001 17149000 0 0 Deletion 71999 LOC_Os11g29510 cysteine-rich receptor-like protein kinase 35 precursor, putative, expressed FN3765-S Chr11 17077001 17149000 0 0 Deletion 71999 LOC_Os11g29520 NBS-LRR disease resistance protein, putative, expressed FN3765-S Chr11 17077001 17149000 0 0 Deletion 71999 LOC_Os11g29530 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr11 17077001 17149000 0 0 Deletion 71999 LOC_Os11g29540 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr11 17077001 17149000 0 0 Deletion 71999 LOC_Os11g29550 retrotransposon protein, putative, unclassified FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30560 dehydrogenase/reductase, putative, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30570 expressed protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30590 transposon protein, putative, Ac/Ds sub-class, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30600 hypothetical protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30620 expressed protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30640 expressed protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30650 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30660 conserved hypothetical protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30670 retrotransposon protein, putative, LINE subclass, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30690 expressed protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30700 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30720 conserved hypothetical protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30740 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30750 expressed protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30760 expressed protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30770 expressed protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30780 expressed protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30790 expressed protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30810 sulfotransferase domain containing protein, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30820 expressed protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30830 expressed protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30840 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30850 retrotransposon protein, putative, Ty3-gypsy subclass FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30880 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30910 sulfotransferase domain containing protein, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30920 transposon protein, putative, Mariner sub-class FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30930 expressed protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30940 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30950 expressed protein FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30960 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30970 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30980 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr11 17787001 18027000 0 0 Deletion 239999 LOC_Os11g30990 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr11 3261840 A-G 0 0 Single Base Substitution 0 HET FN3765-S Chr12 14415532 G-A 0 0 Single Base Substitution 0 HET FN3765-S Chr12 16335281 Chr8 18384123 0 Translocation 0 LOC_Os08g29920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3765-S Chr12 16335281 Chr8 18384123 0 Translocation 0 LOC_Os12g27700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3765-S Chr12 18858003 A-C 0 0 Single Base Substitution 0 HET FN3765-S Chr12 19377260 19377261 0 0 Deletion 1 HET FN3765-S Chr12 20843562 20843564 0 0 Deletion 2 HET FN3765-S Chr12 22862848 C-T 0 0 Single Base Substitution 0 HET FN3765-S Chr12 7736021 7736021 0 0 Insertion 2 frameshift_variant&stop_lost Homo LOC_Os12g13720 Plant PDR ABC transporter associated domain containing protein, expressed FN3765-S Chr12 7841243 7841243 0 0 Insertion 4 HET FN3765-S Chr12 9384155 9384156 0 0 Deletion 1 frameshift_variant HET LOC_Os12g16390 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr2 22717382 C-T 0 0 Single Base Substitution 0 HET FN3765-S Chr3 12738154 12738157 0 0 Deletion 3 HET FN3765-S Chr3 20490052 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g36920 disease resistance protein, putative, expressed FN3765-S Chr3 2083206 2083208 0 0 Deletion 2 Homo FN3765-S Chr3 23009553 C-T 0 0 Single Base Substitution 0 HET FN3765-S Chr3 29166335 A-G 0 0 Single Base Substitution 0 HET FN3765-S Chr3 31621384 31621390 0 0 Deletion 6 Homo FN3765-S Chr3 34880264 A-G 0 0 Single Base Substitution 0 HET FN3765-S Chr3 3492584 T-C 0 0 Single Base Substitution 0 Homo FN3765-S Chr3 4261325 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g08350 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed FN3765-S Chr3 4261331 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g08350 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed FN3765-S Chr3 4261332 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g08350 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed FN3765-S Chr4 20205107 20205107 0 0 Insertion 50 HET FN3765-S Chr4 22859679 22859680 0 0 Deletion 1 HET FN3765-S Chr4 27520001 27548000 0 0 Deletion 27999 LOC_Os04g46410 AP2 domain containing protein, expressed FN3765-S Chr4 27520001 27548000 0 0 Deletion 27999 LOC_Os04g46420 expressed protein FN3765-S Chr4 27520001 27548000 0 0 Deletion 27999 LOC_Os04g46430 expressed protein FN3765-S Chr4 27520001 27548000 0 0 Deletion 27999 LOC_Os04g46440 AP2 domain containing protein, expressed FN3765-S Chr4 27520001 27548000 0 0 Deletion 27999 LOC_Os04g46444 expressed protein FN3765-S Chr4 30008760 30985072 0 0 Inversion 0 LOC_Os04g50720 ara54-like RING finger protein, putative, expressed FN3765-S Chr4 30008767 30985076 0 0 Inversion 0 LOC_Os04g50720 ara54-like RING finger protein, putative, expressed FN3765-S Chr5 22971916 A-C 0 0 Single Base Substitution 0 HET FN3765-S Chr5 5212055 Chr1 26217213 0 Translocation 0 LOC_Os01g46110 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3765-S Chr5 5212055 Chr1 26217213 0 Translocation 0 LOC_Os05g09330 transposon protein, putative, CACTA, En/Spm sub-class FN3765-S Chr6 15697597 C-G 0 0 Single Base Substitution 0 Homo FN3765-S Chr6 16615259 16615267 0 0 Deletion 8 Homo FN3765-S Chr6 21542209 Chr1 24321503 0 Translocation 0 LOC_Os06g36650 ABC transporter family protein, putative, expressed FN3765-S Chr6 2161711 T-C 0 0 Single Base Substitution 0 HET FN3765-S Chr6 30404555 30404562 0 0 Deletion 7 HET FN3765-S Chr7 14263419 G-A 0 0 Single Base Substitution 0 Homo FN3765-S Chr7 17677244 A-T 0 0 Single Base Substitution 0 Homo FN3765-S Chr7 28715121 28715133 0 0 Deletion 12 Homo FN3765-S Chr7 28820330 28925342 0 0 Inversion 0 FN3765-S Chr7 28820356 28934503 0 0 Inversion 0 FN3765-S Chr7 28925354 Chr6 3977639 0 Translocation 0 FN3765-S Chr7 28925446 Chr6 3977471 0 Translocation 0 FN3765-S Chr7 28926001 28934000 0 0 Deletion 7999 LOC_Os07g48410 RNA-binding zinc finger protein, putative, expressed FN3765-S Chr7 29338024 Chr1 24323245 0 Translocation 0 FN3765-S Chr7 3982394 Chr3 2625292 0 Translocation 0 LOC_Os03g05360 transposon protein, putative, unclassified, expressed FN3765-S Chr7 96314 Chr3 22295898 0 Translocation 0 FN3765-S Chr8 15010874 Chr1 35935197 0 Translocation 0 FN3765-S Chr8 2632362 C-T 0 0 Single Base Substitution 0 Homo FN3765-S Chr8 7299819 C-A 0 0 Single Base Substitution 0 HET FN3765-S Chr8 8365951 T-A 0 0 Single Base Substitution 0 HET FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g37880 serine/threonine-protein kinase receptor precursor, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g37890 serine/threonine-protein kinase receptor precursor, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g37910 HMG1/2, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g37920 helicase, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g37930 expressed protein FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g37940 expressed protein FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g37949 serine/threonine-protein kinase SRPK1, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g37958 cupin domain containing protein, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g37967 cupin domain containing protein, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g37976 cupin domain containing protein, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g37990 expressed protein FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38000 no apical meristem protein, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38010 no apical meristem protein, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38020 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38030 UTP--glucose-1-phosphate uridylyltransferase, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38040 hydrolase, NUDIX family protein, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38050 expressed protein FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38060 nicotinate-nucleotide pyrophosphorylase, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38070 expressed protein FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38080 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38090 expressed protein FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38100 phosphate carrier protein, mitochondrial precursor, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38104 hypothetical protein FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38110 RING-H2 finger protein, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38120 expressed protein FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38130 auxin efflux carrier component, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38150 expressed protein FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38170 expressed protein FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38200 retrotransposon protein, putative, unclassified, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38210 auxin efflux carrier component, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38239 sulfotransferase domain containing protein, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38268 RNA polymerase IV largest subunit, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38300 OsFBK20 - F-box domain and kelch repeat containing protein, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38310 pentatricopeptide, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38320 phytoene synthase, chloroplast precursor, putative, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38330 MORN repeat domain containing protein, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38340 ZOS9-17 - C2H2 zinc finger protein, expressed FN3765-S Chr9 21837001 22087000 0 0 Deletion 249999 LOC_Os09g38350 AMP-binding domain containing protein, expressed FN3765-S Chr9 2992485 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g06360 retrotransposon, putative, centromere-specific FN3765-S Chr9 4757291 Chr8 10071806 0 Translocation 0 FN3765-S Chr9 8881667 8881669 0 0 Deletion 2 HET