FN3766-S Chr1 16356131 16356158 0 0 Deletion 27 Homo FN3766-S Chr1 20141456 20141457 0 0 Deletion 1 frameshift_variant Homo LOC_Os01g36320 retrotransposon protein, putative, unclassified FN3766-S Chr1 31181564 T-A 0 0 Single Base Substitution 0 HET FN3766-S Chr1 31181567 T-A 0 0 Single Base Substitution 0 HET FN3766-S Chr1 32055488 T-C 0 0 Single Base Substitution 0 Homo FN3766-S Chr1 6314014 C-T 0 0 Single Base Substitution 0 Homo FN3766-S Chr10 2401396 T-C 0 0 Single Base Substitution 0 Homo FN3766-S Chr10 2579376 2579377 0 0 Deletion 1 Homo FN3766-S Chr10 4536526 4536526 0 0 Insertion 2 HET FN3766-S Chr10 6835678 6835679 0 0 Deletion 1 HET FN3766-S Chr11 11624341 11624346 0 0 Deletion 5 Homo FN3766-S Chr11 11802034 11802037 0 0 Deletion 3 HET FN3766-S Chr11 14925446 14925446 0 0 Insertion 3 HET FN3766-S Chr11 20878309 20878309 0 0 Insertion 46 HET FN3766-S Chr11 27423605 Chr2 8310768 0 Translocation 0 LOC_Os02g14900 1,3-beta-glucan synthase component domain containing protein, expressed FN3766-S Chr11 3060612 Chr5 26623814 0 Translocation 0 FN3766-S Chr11 5543321 C-T 0 0 Single Base Substitution 0 Homo FN3766-S Chr11 9930921 C-G 0 0 Single Base Substitution 0 Homo FN3766-S Chr11 9930922 T-C 0 0 Single Base Substitution 0 Homo FN3766-S Chr12 12507904 C-G 0 0 Single Base Substitution 0 HET FN3766-S Chr12 13427800 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g23660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3766-S Chr12 19782229 A-G 0 0 Single Base Substitution 0 Homo FN3766-S Chr12 23786944 23786956 0 0 Deletion 12 HET FN3766-S Chr12 23957594 A-C 0 0 Single Base Substitution 0 Homo FN3766-S Chr12 8022932 C-T 0 0 Single Base Substitution 0 HET FN3766-S Chr12 9262045 9526024 0 0 Inversion 0 FN3766-S Chr12 9262051 9526052 0 0 Inversion 0 FN3766-S Chr2 10199560 T-A 0 0 Single Base Substitution 0 Homo FN3766-S Chr2 10961459 A-T 0 0 Single Base Substitution 0 HET FN3766-S Chr2 2984327 C-T 0 0 Single Base Substitution 0 HET FN3766-S Chr3 11445318 C-T 0 0 Single Base Substitution 0 HET FN3766-S Chr3 1838424 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g04030 HVA22, putative, expressed FN3766-S Chr3 22906677 22906682 0 0 Deletion 5 HET FN3766-S Chr3 26316262 G-A 0 0 Single Base Substitution 0 Homo FN3766-S Chr3 3834863 A-G 0 0 Single Base Substitution 0 Homo FN3766-S Chr3 9977079 G-A 0 0 Single Base Substitution 0 HET FN3766-S Chr4 15325223 C-A 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os04g26290 retrotransposon protein, putative, unclassified, expressed FN3766-S Chr4 22657712 C-T 0 0 Single Base Substitution 0 HET FN3766-S Chr5 11172186 11172186 0 0 Insertion 2 frameshift_variant HET LOC_Os05g19240 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3766-S Chr5 14661550 T-A 0 0 Single Base Substitution 0 Homo FN3766-S Chr5 18217872 T-C 0 0 Single Base Substitution 0 Homo FN3766-S Chr5 20369899 T-A 0 0 Single Base Substitution 0 Homo FN3766-S Chr5 25240579 25240582 0 0 Deletion 3 disruptive_inframe_deletion Homo LOC_Os05g43410 retrotransposon protein, putative, unclassified, expressed FN3766-S Chr5 29699324 G-A 0 0 Single Base Substitution 0 HET FN3766-S Chr5 4954671 Chr4 857626 0 Translocation 0 FN3766-S Chr6 14606073 14606090 0 0 Deletion 17 HET FN3766-S Chr6 18115258 C-A 0 0 Single Base Substitution 0 Homo FN3766-S Chr6 20152409 20152409 0 0 Insertion 9 HET FN3766-S Chr6 20315040 G-C 0 0 Single Base Substitution 0 HET FN3766-S Chr6 28434559 28434560 0 0 Deletion 1 HET FN3766-S Chr6 5666767 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g10870 retrotransposon protein, putative, unclassified, expressed FN3766-S Chr6 6473012 6473014 0 0 Deletion 2 frameshift_variant Homo LOC_Os06g12080 mTERF family protein, expressed FN3766-S Chr6 8976419 8976445 0 0 Deletion 26 HET FN3766-S Chr7 18745419 G-T 0 0 Single Base Substitution 0 Homo FN3766-S Chr7 21708653 21708662 0 0 Deletion 9 disruptive_inframe_deletion Homo LOC_Os07g36300 OsFBX243 - F-box domain containing protein, expressed FN3766-S Chr7 21937500 C-T 0 0 Single Base Substitution 0 Homo FN3766-S Chr8 2166186 2305313 0 0 Inversion 0 FN3766-S Chr8 22571843 T-G 0 0 Single Base Substitution 0 HET FN3766-S Chr8 23461108 23461108 0 0 Insertion 103 stop_gained&disruptive_inframe_insertion HET LOC_Os08g37120 transposon protein, putative, unclassified, expressed FN3766-S Chr8 23840026 C-T 0 0 Single Base Substitution 0 HET FN3766-S Chr8 24303934 T-C 0 0 Single Base Substitution 0 Homo FN3766-S Chr9 12935203 12935211 0 0 Deletion 8 Homo FN3766-S Chr9 14311000 14311000 0 0 Insertion 1 HET FN3766-S Chr9 21767187 21767188 0 0 Deletion 1 HET FN3766-S Chr9 3314996 3363764 0 0 Inversion 0 FN3766-S Chr9 3320615 3363768 0 0 Inversion 0 LOC_Os09g06900 retrotransposon protein, putative, unclassified, expressed