FN3787-S Chr1 15793169 T-G 0 0 Single Base Substitution 0 Homo FN3787-S Chr1 26936372 T-A 0 0 Single Base Substitution 0 HET FN3787-S Chr1 27258581 27258585 0 0 Deletion 4 HET FN3787-S Chr1 34279445 C-T 0 0 Single Base Substitution 0 HET FN3787-S Chr1 34919998 G-C 0 0 Single Base Substitution 0 HET FN3787-S Chr1 42358924 C-T 0 0 Single Base Substitution 0 Homo FN3787-S Chr1 857686 857689 0 0 Deletion 3 HET FN3787-S Chr1 9208525 G-A 0 0 Single Base Substitution 0 HET FN3787-S Chr10 14173913 14173916 0 0 Deletion 3 HET FN3787-S Chr10 272954 G-A 0 0 Single Base Substitution 0 Homo FN3787-S Chr10 7168523 7168523 0 0 Insertion 1 HET FN3787-S Chr11 11540734 11540739 0 0 Deletion 5 frameshift_variant HET LOC_Os11g20040 O-methyltransferase, putative, expressed FN3787-S Chr11 18279665 Chr3 29622495 0 Translocation 0 FN3787-S Chr11 19390247 19639914 0 0 Inversion 0 FN3787-S Chr11 20190661 20242002 0 0 Inversion 0 FN3787-S Chr11 20190670 20242008 0 0 Inversion 0 FN3787-S Chr11 26547084 Chr6 6311132 0 Translocation 0 LOC_Os11g43950 dnaJ domain containing protein, expressed FN3787-S Chr11 26646784 Chr6 6297224 0 Translocation 0 LOC_Os06g11850 expressed protein FN3787-S Chr11 27767378 G-C 0 0 Single Base Substitution 0 HET FN3787-S Chr11 5528651 Chr2 10035630 0 Translocation 0 LOC_Os02g17440 retrotransposon protein, putative, unclassified, expressed FN3787-S Chr11 5528656 Chr1 915544 0 Translocation 0 FN3787-S Chr11 6212250 C-T 0 0 Single Base Substitution 0 HET FN3787-S Chr11 6481645 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g11660 expressed protein FN3787-S Chr12 11782470 G-C 0 0 Single Base Substitution 0 HET FN3787-S Chr12 12485555 C-A 0 0 Single Base Substitution 0 HET FN3787-S Chr12 23979751 23979751 0 0 Insertion 1 HET FN3787-S Chr12 24004331 T-A 0 0 Single Base Substitution 0 HET FN3787-S Chr12 24004333 G-A 0 0 Single Base Substitution 0 HET FN3787-S Chr12 24004338 G-A 0 0 Single Base Substitution 0 HET FN3787-S Chr12 4043401 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g07960 expressed protein FN3787-S Chr2 10035625 Chr1 915778 0 Translocation 0 LOC_Os01g02690 resistance-related receptor-like kinase, putative, expressed FN3787-S Chr2 10035625 Chr1 915778 0 Translocation 0 LOC_Os02g17440 retrotransposon protein, putative, unclassified, expressed FN3787-S Chr2 15375464 C-T 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os02g26190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3787-S Chr2 23151591 T-G 0 0 Single Base Substitution 0 HET FN3787-S Chr2 23358219 G-A 0 0 Single Base Substitution 0 Homo FN3787-S Chr2 409614 T-C 0 0 Single Base Substitution 0 Homo FN3787-S Chr2 6579241 T-C 0 0 Single Base Substitution 0 Homo FN3787-S Chr3 13042212 A-G 0 0 Single Base Substitution 0 HET FN3787-S Chr3 1479824 1479825 0 0 Deletion 1 HET FN3787-S Chr3 22759606 22759606 0 0 Insertion 119 HET FN3787-S Chr3 28501288 G-A 0 0 Single Base Substitution 0 Homo FN3787-S Chr3 31639384 C-T 0 0 Single Base Substitution 0 HET FN3787-S Chr4 12690681 12690682 0 0 Deletion 1 splice_acceptor_variant&intron_variant HET LOC_Os04g22400 retrotransposon protein, putative, Ty1-copia subclass FN3787-S Chr4 15949001 16016000 0 0 Deletion 66999 LOC_Os04g26970 retrotransposon protein, putative, unclassified FN3787-S Chr4 15949001 16016000 0 0 Deletion 66999 LOC_Os04g26980 terpene synthase, putative, expressed FN3787-S Chr4 15949001 16016000 0 0 Deletion 66999 LOC_Os04g26994 retrotransposon protein, putative, unclassified FN3787-S Chr4 15949001 16016000 0 0 Deletion 66999 LOC_Os04g27010 hypothetical protein FN3787-S Chr4 15949001 16016000 0 0 Deletion 66999 LOC_Os04g27020 cytochrome P450, putative, expressed FN3787-S Chr4 15949001 16016000 0 0 Deletion 66999 LOC_Os04g27034 retrotransposon protein, putative, unclassified FN3787-S Chr4 15949001 16016000 0 0 Deletion 66999 LOC_Os04g27050 expressed protein FN3787-S Chr4 15949001 16016000 0 0 Deletion 66999 LOC_Os04g27060 oxidoreductase, aldo/keto reductase family protein, putative, expressed FN3787-S Chr4 15949001 16016000 0 0 Deletion 66999 LOC_Os04g27070 terpene synthase, putative, expressed FN3787-S Chr4 15949001 16016000 0 0 Deletion 66999 LOC_Os04g27080 hypothetical protein FN3787-S Chr4 15951523 16230468 0 0 Inversion 0 LOC_Os04g27440 retrotransposon protein, putative, unclassified, expressed FN3787-S Chr4 16025001 16080000 0 0 Deletion 54999 LOC_Os04g27092 retrotransposon protein, putative, unclassified, expressed FN3787-S Chr4 16025001 16080000 0 0 Deletion 54999 LOC_Os04g27094 retrotransposon protein, putative, unclassified, expressed FN3787-S Chr4 16025001 16080000 0 0 Deletion 54999 LOC_Os04g27096 expressed protein FN3787-S Chr4 16025001 16080000 0 0 Deletion 54999 LOC_Os04g27160 retrotransposon protein, putative, Ty3-gypsy subclass FN3787-S Chr4 16025001 16080000 0 0 Deletion 54999 LOC_Os04g27170 retrotransposon protein, putative, Ty3-gypsy subclass FN3787-S Chr4 16025001 16080000 0 0 Deletion 54999 LOC_Os04g27180 expressed protein FN3787-S Chr4 16025001 16080000 0 0 Deletion 54999 LOC_Os04g27190 terpene synthase, putative, expressed FN3787-S Chr4 16025001 16080000 0 0 Deletion 54999 LOC_Os04g27200 expressed protein FN3787-S Chr4 16198520 16230469 0 0 Inversion 0 LOC_Os04g27440 retrotransposon protein, putative, unclassified, expressed FN3787-S Chr4 18296912 A-T 0 0 Single Base Substitution 0 HET FN3787-S Chr4 2920628 2920633 0 0 Deletion 5 frameshift_variant HET LOC_Os04g05710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3787-S Chr4 35453906 35453906 0 0 Insertion 2 HET FN3787-S Chr5 22982856 G-A 0 0 Single Base Substitution 0 HET FN3787-S Chr5 22996832 22996837 0 0 Deletion 5 HET FN3787-S Chr6 10023872 10023878 0 0 Deletion 6 Homo FN3787-S Chr6 12562482 C-T 0 0 Single Base Substitution 0 Homo FN3787-S Chr6 15741894 15741895 0 0 Deletion 1 frameshift_variant Homo LOC_Os06g27800 tm-1GCR237 protein, putative, expressed FN3787-S Chr6 15925980 15925998 0 0 Deletion 18 Homo FN3787-S Chr6 24355944 Chr1 31032902 0 Translocation 0 FN3787-S Chr6 6298001 6313000 0 0 Deletion 14999 LOC_Os06g11850 expressed protein FN3787-S Chr6 6298001 6313000 0 0 Deletion 14999 LOC_Os06g11860 ethylene-responsive transcription factor, putative, expressed FN3787-S Chr6 6298001 6313000 0 0 Deletion 14999 LOC_Os06g11870 hypothetical protein FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01010 expressed protein FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01020 SOR/SNZ family protein, putative, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01030 glycosyl transferase, group 1 domain containing protein, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01040 retrotransposon protein, putative, unclassified, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01050 retrotransposon protein, putative, unclassified FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01060 expressed protein FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01070 peptide transporter, putative, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01080 expressed protein FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01090 transmembrane amino acid transporter protein, putative, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01100 legume lectins beta domain containing protein, putative, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01110 laccase precursor protein, putative, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01114 expressed protein FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01120 expressed protein FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01130 pentatricopeptide containing protein, putative, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01140 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01150 fatty acid hydroxylase, putative, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01160 expressed protein FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01170 expressed protein FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01180 ZOS7-01 - C2H2 zinc finger protein, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01190 expressed protein FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01200 tetraacyldisaccharide 4-kinase, putative, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01214 transposon protein, putative, unclassified, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01230 expressed protein FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01240 expressed protein FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01250 tobamovirus multiplication protein, putative, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01260 la domain containing protein, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01270 transposon protein, putative, unclassified, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01280 expressed protein FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01290 transposon protein, putative, unclassified, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01300 expressed protein FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01310 glutamate receptor, putative, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01320 expressed protein FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01330 retrotransposon protein, putative, unclassified FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01340 gibberellin 2-beta-dioxygenase 7, putative, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01350 retrotransposon protein, putative, unclassified, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01360 retrotransposon protein, putative, unclassified, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01370 peroxidase precursor, putative, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01380 peroxidase precursor, putative, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01400 peroxidase precursor, putative, expressed FN3787-S Chr7 1 261000 0 0 Deletion 260999 LOC_Os07g01410 peroxidase precursor, putative, expressed FN3787-S Chr7 10165201 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g17240 transposon protein, putative, unclassified, expressed FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18750 LTPL42 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18760 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18780 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18790 retrotransposon protein, putative, unclassified FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18800 retrotransposon protein, putative, unclassified FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18810 retrotransposon protein, putative, unclassified, expressed FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18820 hypothetical protein FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18830 retrotransposon protein, putative, Ty3-gypsy subclass FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18840 transposon protein, putative, unclassified, expressed FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18860 expressed protein FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18874 white-brown complex homolog protein 11, putative, expressed FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18890 retrotransposon protein, putative, unclassified, expressed FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18910 retrotransposon protein, putative, unclassified FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18930 expressed protein FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18944 expressed protein FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18960 GCRP14 - Glycine and cysteine rich family protein precursor, putative, expressed FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18970 retrotransposon protein, putative, unclassified, expressed FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18980 expressed protein FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g18990 LTPL40 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3787-S Chr7 11080001 11257000 0 0 Deletion 176999 LOC_Os07g19000 LTPL41 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3787-S Chr7 11598770 11598772 0 0 Deletion 2 Homo FN3787-S Chr7 12111831 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g20940 retrotransposon protein, putative, unclassified, expressed FN3787-S Chr7 13883582 C-T 0 0 Single Base Substitution 0 Homo FN3787-S Chr7 14816944 14816961 0 0 Deletion 17 Homo FN3787-S Chr7 16510564 A-G 0 0 Single Base Substitution 0 HET FN3787-S Chr7 23557396 G-A 0 0 Single Base Substitution 0 HET FN3787-S Chr7 3581474 C-G 0 0 Single Base Substitution 0 HET FN3787-S Chr8 10468199 10468200 0 0 Deletion 1 Homo FN3787-S Chr8 10468902 10468903 0 0 Deletion 1 Homo FN3787-S Chr8 11394671 G-A 0 0 Single Base Substitution 0 Homo FN3787-S Chr8 17402555 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g28500 retrotransposon protein, putative, unclassified, expressed FN3787-S Chr8 2102919 C-T 0 0 Single Base Substitution 0 HET FN3787-S Chr8 27625588 27625590 0 0 Deletion 2 HET FN3787-S Chr8 6609231 A-T 0 0 Single Base Substitution 0 Homo FN3787-S Chr9 17975894 C-T 0 0 Single Base Substitution 0 HET FN3787-S Chr9 18072323 18072339 0 0 Deletion 16 frameshift_variant HET LOC_Os09g29720 transposon protein, putative, CACTA, En/Spm sub-class FN3787-S Chr9 22660905 22660917 0 0 Deletion 12 disruptive_inframe_deletion HET LOC_Os09g39410 male sterility protein, putative, expressed FN3787-S Chr9 4107808 C-G 0 0 Single Base Substitution 0 Homo