FN3810-S Chr1 22979066 G-A 0 0 Single Base Substitution 0 HET FN3810-S Chr1 26533431 26533434 0 0 Deletion 3 stop_lost&inframe_deletion Homo LOC_Os01g46610 dehydrogenase, putative, expressed FN3810-S Chr1 32838562 T-G 0 0 Single Base Substitution 0 HET FN3810-S Chr1 36798310 T-A 0 0 Single Base Substitution 0 HET FN3810-S Chr1 36872498 C-T 0 0 Single Base Substitution 0 HET FN3810-S Chr1 6856244 C-A 0 0 Single Base Substitution 0 HET FN3810-S Chr10 1762827 G-A 0 0 Single Base Substitution 0 HET FN3810-S Chr10 18952166 C-T 0 0 Single Base Substitution 0 HET FN3810-S Chr10 21612212 21612212 0 0 Insertion 3 HET FN3810-S Chr10 21614262 G-A 0 0 Single Base Substitution 0 Homo FN3810-S Chr10 8550580 C-T 0 0 Single Base Substitution 0 HET FN3810-S Chr10 8667874 8667874 0 0 Insertion 1 HET FN3810-S Chr11 15801757 C-G 0 0 Single Base Substitution 0 HET FN3810-S Chr11 19498192 19498193 0 0 Deletion 1 HET FN3810-S Chr11 20818001 G-A 0 0 Single Base Substitution 0 HET FN3810-S Chr11 21326365 C-T 0 0 Single Base Substitution 0 Homo FN3810-S Chr11 3865576 T-A 0 0 Single Base Substitution 0 HET FN3810-S Chr12 16960001 16976000 0 0 Deletion 15999 LOC_Os12g28710 ATPase 3, putative, expressed FN3810-S Chr12 16960001 16976000 0 0 Deletion 15999 LOC_Os12g28720 hypothetical protein FN3810-S Chr12 16960001 16976000 0 0 Deletion 15999 LOC_Os12g28730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28740 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28750 TPD1, putative, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28760 expressed protein FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28770 POEI19 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28780 expressed protein FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28790 expressed protein FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28800 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28820 expressed protein FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28830 retrotransposon protein, putative, unclassified, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28840 retrotransposon protein, putative, unclassified, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28850 retrotransposon protein, putative, unclassified, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28860 expressed protein FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28870 expressed protein FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28880 LTPL110 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28890 retrotransposon protein, putative, unclassified, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28900 retrotransposon protein, putative, unclassified FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28910 expressed protein FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28930 retrotransposon protein, putative, unclassified FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28940 retrotransposon protein, putative, unclassified, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28950 retrotransposon protein, putative, unclassified, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28960 retrotransposon protein, putative, unclassified FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28980 retrotransposon protein, putative, Ty3-gypsy subclass FN3810-S Chr12 16981001 17150000 0 0 Deletion 168999 LOC_Os12g28990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3810-S Chr12 17175001 17225000 0 0 Deletion 49999 LOC_Os12g29020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3810-S Chr12 17175001 17225000 0 0 Deletion 49999 LOC_Os12g29030 retrotransposon protein, putative, unclassified, expressed FN3810-S Chr12 17175001 17225000 0 0 Deletion 49999 LOC_Os12g29040 LTPL111 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3810-S Chr12 17175001 17225000 0 0 Deletion 49999 LOC_Os12g29050 hypothetical protein FN3810-S Chr12 17175001 17225000 0 0 Deletion 49999 LOC_Os12g29060 retrotransposon protein, putative, unclassified, expressed FN3810-S Chr12 17175001 17225000 0 0 Deletion 49999 LOC_Os12g29070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3810-S Chr12 17175001 17225000 0 0 Deletion 49999 LOC_Os12g29080 retrotransposon protein, putative, Ty3-gypsy subclass FN3810-S Chr12 17231001 17285000 0 0 Deletion 53999 LOC_Os12g29100 retrotransposon protein, putative, Ty3-gypsy subclass FN3810-S Chr12 17231001 17285000 0 0 Deletion 53999 LOC_Os12g29110 retrotransposon protein, putative, Ty3-gypsy subclass FN3810-S Chr12 17231001 17285000 0 0 Deletion 53999 LOC_Os12g29120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3810-S Chr12 17231001 17285000 0 0 Deletion 53999 LOC_Os12g29130 retrotransposon protein, putative, Ty3-gypsy subclass FN3810-S Chr12 17231001 17285000 0 0 Deletion 53999 LOC_Os12g29140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3810-S Chr12 17231001 17285000 0 0 Deletion 53999 LOC_Os12g29150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3810-S Chr12 17231001 17285000 0 0 Deletion 53999 LOC_Os12g29160 LTPL105 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN3810-S Chr12 17231001 17285000 0 0 Deletion 53999 LOC_Os12g29170 expressed protein FN3810-S Chr12 17231001 17285000 0 0 Deletion 53999 LOC_Os12g29180 expressed protein FN3810-S Chr12 17231001 17285000 0 0 Deletion 53999 LOC_Os12g29190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3810-S Chr12 17296001 17321000 0 0 Deletion 24999 LOC_Os12g29220 nodulin MtN3 family protein, putative, expressed FN3810-S Chr12 17296001 17321000 0 0 Deletion 24999 LOC_Os12g29230 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3810-S Chr12 17296001 17321000 0 0 Deletion 24999 LOC_Os12g29240 latency associated nuclear antigen, putative FN3810-S Chr12 17296001 17321000 0 0 Deletion 24999 LOC_Os12g29250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3810-S Chr12 17324001 17337000 0 0 Deletion 12999 FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29280 disease resistance protein RGA3, putative, expressed FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29290 disease resistance protein RGA3, putative, expressed FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29300 CESA10 - cellulose synthase, expressed FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29310 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29320 expressed protein FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29330 no apical meristem protein, putative, expressed FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29340 expressed protein FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29350 ATP binding protein, putative, expressed FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29360 retrotransposon protein, putative, unclassified, expressed FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29370 ZmEBE-1 protein, putative, expressed FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29390 expressed protein FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29400 GRAM domain containing protein, expressed FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29410 expressed protein FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29420 retrotransposon protein, putative, unclassified, expressed FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29430 OsWAK125 - OsWAK receptor-like protein OsWAK-RLP, expressed FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29434 wall-associated receptor kinase 3 precursor, putative, expressed FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29440 retrotransposon, putative, centromere-specific FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29450 retrotransposon protein, putative, LINE subclass, expressed FN3810-S Chr12 17354001 17513000 0 0 Deletion 158999 LOC_Os12g29470 hypothetical protein FN3810-S Chr12 18228634 G-A 0 0 Single Base Substitution 0 HET FN3810-S Chr12 21726926 G-T 0 0 Single Base Substitution 0 HET FN3810-S Chr12 784116 784117 0 0 Deletion 1 HET FN3810-S Chr12 9842015 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g17190 retrotransposon protein, putative, unclassified, expressed FN3810-S Chr2 19145830 C-G 0 0 Single Base Substitution 0 Homo FN3810-S Chr2 29029437 G-C 0 0 Single Base Substitution 0 HET FN3810-S Chr2 9510648 C-T 0 0 Single Base Substitution 0 Homo FN3810-S Chr3 6823651 6823764 0 0 Inversion 0 FN3810-S Chr4 23119829 C-T 0 0 Single Base Substitution 0 Homo FN3810-S Chr4 2428923 2428931 0 0 Deletion 8 frameshift_variant Homo LOC_Os04g05010 CBS domain containing membrane protein, putative, expressed FN3810-S Chr4 33496473 33496474 0 0 Deletion 1 Homo FN3810-S Chr4 34275795 G-A 0 0 Single Base Substitution 0 Homo FN3810-S Chr4 34768945 34768945 0 0 Insertion 1 Homo FN3810-S Chr4 7758898 C-T 0 0 Single Base Substitution 0 HET FN3810-S Chr5 10593479 A-T 0 0 Single Base Substitution 0 Homo FN3810-S Chr5 15676729 15854317 0 0 Inversion 0 LOC_Os05g27270 retrotransposon protein, putative, unclassified, expressed FN3810-S Chr5 24858416 T-C 0 0 Single Base Substitution 0 Homo FN3810-S Chr5 27666368 G-A 0 0 Single Base Substitution 0 Homo FN3810-S Chr5 3021820 Chr1 27404635 0 Translocation 0 FN3810-S Chr5 7773578 7773585 0 0 Deletion 7 Homo FN3810-S Chr6 11597491 A-G 0 0 Single Base Substitution 0 Homo FN3810-S Chr6 14342265 T-C 0 0 Single Base Substitution 0 Homo FN3810-S Chr6 19964147 19964168 0 0 Deletion 21 disruptive_inframe_deletion Homo LOC_Os06g34320 retrotransposon protein, putative, unclassified, expressed FN3810-S Chr6 25348030 25709116 0 0 Inversion 0 LOC_Os06g42220 TOO MANY MOUTHS precursor, putative, expressed FN3810-S Chr6 25348030 25709116 0 0 Inversion 0 LOC_Os06g42754 expressed protein FN3810-S Chr6 25348042 25709124 0 0 Inversion 0 LOC_Os06g42220 TOO MANY MOUTHS precursor, putative, expressed FN3810-S Chr6 25348042 25709124 0 0 Inversion 0 LOC_Os06g42754 expressed protein FN3810-S Chr6 28763937 28763937 0 0 Insertion 3 inframe_insertion HET LOC_Os06g47510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3810-S Chr6 28971360 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g47890 OsFBO9 - F-box and other domain containing protein, expressed FN3810-S Chr7 15253001 15306000 0 0 Deletion 52999 LOC_Os07g26510 retrotransposon protein, putative, unclassified, expressed FN3810-S Chr7 15253001 15306000 0 0 Deletion 52999 LOC_Os07g26520 expressed protein FN3810-S Chr7 15253001 15306000 0 0 Deletion 52999 LOC_Os07g26530 hypothetical protein FN3810-S Chr7 15253001 15306000 0 0 Deletion 52999 LOC_Os07g26540 hexokinase, putative, expressed FN3810-S Chr7 15253001 15306000 0 0 Deletion 52999 LOC_Os07g26550 expressed protein FN3810-S Chr7 15253001 15306000 0 0 Deletion 52999 LOC_Os07g26560 expressed protein FN3810-S Chr7 15253001 15306000 0 0 Deletion 52999 LOC_Os07g26570 expressed protein FN3810-S Chr7 5492835 5492839 0 0 Deletion 4 frameshift_variant HET LOC_Os07g10230 glucosyltransferase, putative, expressed FN3810-S Chr7 9746791 A-T 0 0 Single Base Substitution 0 HET FN3810-S Chr8 10407652 G-A 0 0 Single Base Substitution 0 HET FN3810-S Chr8 166687 C-T 0 0 Single Base Substitution 0 HET FN3810-S Chr8 19170691 G-A 0 0 Single Base Substitution 0 HET FN3810-S Chr8 439060 T-A 0 0 Single Base Substitution 0 HET FN3810-S Chr8 439149 G-C 0 0 Single Base Substitution 0 HET FN3810-S Chr8 5481489 5481490 0 0 Deletion 1 HET FN3810-S Chr8 6788554 A-T 0 0 Single Base Substitution 0 HET FN3810-S Chr8 7734492 C-A 0 0 Single Base Substitution 0 HET FN3810-S Chr9 11289078 T-G 0 0 Single Base Substitution 0 HET FN3810-S Chr9 13506280 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g22350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3810-S Chr9 18507200 A-C 0 0 Single Base Substitution 0 HET FN3810-S Chr9 19195501 19195501 0 0 Insertion 79 HET FN3810-S Chr9 20929367 A-G 0 0 Single Base Substitution 0 HET FN3810-S Chr9 993053 T-G 0 0 Single Base Substitution 0 HET