FN3811-S Chr1 1826931 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g04150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3811-S Chr1 20031867 20031892 0 0 Deletion 25 HET FN3811-S Chr1 27209795 C-T 0 0 Single Base Substitution 0 HET FN3811-S Chr1 33311815 C-T 0 0 Single Base Substitution 0 HET FN3811-S Chr1 3631993 3632192 0 0 Inversion 0 FN3811-S Chr1 6526363 6526369 0 0 Deletion 6 HET FN3811-S Chr1 8179376 T-A 0 0 Single Base Substitution 0 HET FN3811-S Chr1 9237156 9820755 0 0 Inversion 0 LOC_Os01g17070 OsDegp1 - Putative Deg protease homologue, expressed FN3811-S Chr1 9237173 9820878 0 0 Inversion 0 LOC_Os01g17070 OsDegp1 - Putative Deg protease homologue, expressed FN3811-S Chr10 11394040 11394040 0 0 Insertion 1 Homo FN3811-S Chr10 12733239 Chr9 759195 0 Translocation 0 LOC_Os09g02070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr10 12733239 Chr9 759195 0 Translocation 0 LOC_Os10g24750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr10 17102502 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g32649 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr10 20903364 C-T 0 0 Single Base Substitution 0 HET FN3811-S Chr11 18581271 G-A 0 0 Single Base Substitution 0 HET FN3811-S Chr11 20126119 Chr3 8260852 0 Translocation 0 LOC_Os11g34330 expressed protein FN3811-S Chr11 20667460 C-T 0 0 Single Base Substitution 0 HET FN3811-S Chr11 26472532 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g43820 myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed FN3811-S Chr11 952001 1002000 0 0 Deletion 49999 LOC_Os11g02830 protein kinase domain containing protein, expressed FN3811-S Chr11 952001 1002000 0 0 Deletion 49999 LOC_Os11g02840 protein kinase, putative, expressed FN3811-S Chr11 952001 1002000 0 0 Deletion 49999 LOC_Os11g02850 expressed protein FN3811-S Chr11 952001 1002000 0 0 Deletion 49999 LOC_Os11g02860 expressed protein FN3811-S Chr11 952001 1002000 0 0 Deletion 49999 LOC_Os11g02870 retrotransposon protein, putative, unclassified, expressed FN3811-S Chr11 952001 1002000 0 0 Deletion 49999 LOC_Os11g02880 retrotransposon protein, putative, unclassified, expressed FN3811-S Chr11 952001 1002000 0 0 Deletion 49999 LOC_Os11g02890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr11 952001 1002000 0 0 Deletion 49999 LOC_Os11g02900 retrotransposon protein, putative, Ty3-gypsy subclass FN3811-S Chr11 952001 1002000 0 0 Deletion 49999 LOC_Os11g02910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17770 retrotransposon protein, putative, unclassified FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17780 retrotransposon protein, putative, unclassified, expressed FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17790 expressed protein FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17804 expressed protein FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17810 hypothetical protein FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17820 expressed protein FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17830 expressed protein FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17840 ubiquitin family protein, expressed FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17880 armadillo/beta-catenin repeat protein-related, putative, expressed FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17890 expressed protein FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17900 armadillo/beta-catenin repeat family protein, putative, expressed FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17910 T-complex protein, putative, expressed FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17920 hypothetical protein FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17930 expressed protein FN3811-S Chr12 10167001 10313000 0 0 Deletion 145999 LOC_Os12g17940 expressed protein FN3811-S Chr12 10239205 10239217 0 0 Deletion 12 HET FN3811-S Chr12 11580744 G-A 0 0 Single Base Substitution 0 HET FN3811-S Chr12 15077756 C-G 0 0 Single Base Substitution 0 HET FN3811-S Chr12 19857840 19857932 0 0 Deletion 92 HET FN3811-S Chr12 24406059 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g39570 transposon protein, putative, unclassified, expressed FN3811-S Chr12 7825060 G-A 0 0 Single Base Substitution 0 HET FN3811-S Chr12 7825061 C-A 0 0 Single Base Substitution 0 HET FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17090 stripe rust resistance protein Yr10, putative, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17100 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17110 retrotransposon protein, putative, Ty1-copia subclass FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17120 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17130 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17140 mla1, putative, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17150 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17160 flavonol sulfotransferase, putative, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17190 retrotransposon protein, putative, unclassified, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17200 hypothetical protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17230 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17240 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17250 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17270 transposon protein, putative, CACTA, En/Spm sub-class FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17280 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17310 prefoldin, putative, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17320 polyprenyl synthetase, putative, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17330 conserved hypothetical protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17340 CC-NBS-LRR resistance protein MLA13, putative, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17350 retrotransposon protein, putative, unclassified, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17360 retrotransposon protein, putative, unclassified, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17370 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17390 retrotransposon protein, putative, unclassified, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17400 retrotransposon protein, putative, unclassified FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17410 NB-ARC domain containing protein, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17420 resistance protein, putative, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17424 retrotransposon protein, putative, unclassified FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17430 NBS-LRR disease resistance protein, putative, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17440 retrotransposon protein, putative, unclassified FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17450 retrotransposon protein, putative, unclassified, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17460 retrotransposon protein, putative, unclassified, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17470 retrotransposon protein, putative, unclassified, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17480 MLA12, putative, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17490 stripe rust resistance protein Yr10, putative, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17500 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17520 conserved hypothetical protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17530 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17540 vignain precursor, putative, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17550 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17560 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17570 GDSL-like lipase/acylhydrolase, putative, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17580 retrotransposon protein, putative, unclassified FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17590 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17600 ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17610 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17620 retrotransposon protein, putative, unclassified, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17630 retrotransposon protein, putative, unclassified FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17640 retrotransposon protein, putative, unclassified, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17650 retrotransposon, putative, centromere-specific FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17660 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17670 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17680 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17690 retrotransposon protein, putative, unclassified, expressed FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17700 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17710 expressed protein FN3811-S Chr12 9784001 10156000 0 0 Deletion 371999 LOC_Os12g17730 retrotransposon protein, putative, Ty3-gypsy subclass FN3811-S Chr2 15800739 G-C 0 0 Single Base Substitution 0 HET FN3811-S Chr2 26568590 Chr1 4970615 0 Translocation 0 FN3811-S Chr2 31845972 31845983 0 0 Deletion 11 frameshift_variant HET LOC_Os02g52020 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3811-S Chr2 34765892 C-A 0 0 Single Base Substitution 0 HET FN3811-S Chr3 10155135 10155144 0 0 Deletion 9 HET FN3811-S Chr3 11974255 11974257 0 0 Deletion 2 HET FN3811-S Chr3 13430453 G-A 0 0 Single Base Substitution 0 HET FN3811-S Chr3 18549440 C-T 0 0 Single Base Substitution 0 HET FN3811-S Chr3 21387216 21387216 0 0 Insertion 1 frameshift_variant HET LOC_Os03g38530 transposon protein, putative, unclassified, expressed FN3811-S Chr3 24263129 C-A 0 0 Single Base Substitution 0 HET FN3811-S Chr3 29712584 A-T 0 0 Single Base Substitution 0 HET FN3811-S Chr3 9764741 9764745 0 0 Deletion 4 HET FN3811-S Chr4 1483226 A-T 0 0 Single Base Substitution 0 Homo FN3811-S Chr4 15872780 G-A 0 0 Single Base Substitution 0 HET FN3811-S Chr4 23256065 G-T 0 0 Single Base Substitution 0 HET FN3811-S Chr4 27850049 G-A 0 0 Single Base Substitution 0 HET FN3811-S Chr4 30702141 T-A 0 0 Single Base Substitution 0 HET FN3811-S Chr4 5642611 T-A 0 0 Single Base Substitution 0 Homo FN3811-S Chr5 10855957 G-T 0 0 Single Base Substitution 0 HET FN3811-S Chr5 13186045 A-T 0 0 Single Base Substitution 0 HET FN3811-S Chr5 16865484 G-C 0 0 Single Base Substitution 0 HET FN3811-S Chr5 4627738 G-A 0 0 Single Base Substitution 0 Homo FN3811-S Chr6 29862026 29862026 0 0 Insertion 1 HET FN3811-S Chr6 30882500 G-A 0 0 Single Base Substitution 0 HET FN3811-S Chr6 9172724 T-C 0 0 Single Base Substitution 0 Homo FN3811-S Chr7 1130649 1130658 0 0 Deletion 9 inframe_deletion Homo LOC_Os07g03015 expressed protein FN3811-S Chr7 16409732 Chr4 28470840 0 Translocation 0 LOC_Os04g47890 MYB family transcription factor, putative, expressed FN3811-S Chr7 16409974 Chr4 28470840 0 Translocation 0 LOC_Os04g47890 MYB family transcription factor, putative, expressed FN3811-S Chr7 18516917 T-G 0 0 Single Base Substitution 0 HET FN3811-S Chr7 20171137 20171139 0 0 Deletion 2 HET FN3811-S Chr7 22889957 C-A 0 0 Single Base Substitution 0 HET FN3811-S Chr7 22889958 C-A 0 0 Single Base Substitution 0 HET FN3811-S Chr8 12179824 G-A 0 0 Single Base Substitution 0 HET FN3811-S Chr8 14285696 14285700 0 0 Deletion 4 HET FN3811-S Chr8 22310949 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g35390 retrotransposon protein, putative, unclassified, expressed FN3811-S Chr8 27042425 27042431 0 0 Deletion 6 Homo FN3811-S Chr8 4019495 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os08g07200 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed FN3811-S Chr8 798553 798558 0 0 Deletion 5 frameshift_variant Homo LOC_Os08g02260 expressed protein FN3811-S Chr9 20060591 T-A 0 0 Single Base Substitution 0 Homo FN3811-S Chr9 22518536 22518537 0 0 Deletion 1 Homo FN3811-S Chr9 3575937 Chr1 6150495 0 Translocation 0