FN3821-S Chr1 13810213 A-G 0 0 Single Base Substitution 0 Homo FN3821-S Chr1 2113000 2113011 0 0 Deletion 11 Homo FN3821-S Chr1 22466875 22466886 0 0 Deletion 11 frameshift_variant&splice_donor_variant&splice_region_variant&intron_variant HET LOC_Os01g39830 beta-galactosidase, putative, expressed FN3821-S Chr1 24925941 24925944 0 0 Deletion 3 Homo FN3821-S Chr1 31821492 31821495 0 0 Deletion 3 Homo FN3821-S Chr1 36597313 A-G 0 0 Single Base Substitution 0 HET FN3821-S Chr1 4003673 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g08220 gibberellin 3-beta-dioxygenase 2-2, putative, expressed FN3821-S Chr1 434503 434512 0 0 Deletion 9 HET FN3821-S Chr1 5770627 C-T 0 0 Single Base Substitution 0 Homo FN3821-S Chr1 9976225 9976227 0 0 Deletion 2 HET FN3821-S Chr10 3929048 3929049 0 0 Deletion 1 HET FN3821-S Chr10 8037274 8037274 0 0 Insertion 4 HET FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03110 GRAS family transcription factor domain containing protein, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03120 hypothetical protein FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03130 E2F-related protein, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03140 expressed protein FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03150 retrotransposon protein, putative, SINE subclass, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03160 glycosyl transferase, family 8, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03170 retrotransposon protein, putative, unclassified, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03180 expressed protein FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03190 expressed protein FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03200 EMB2748, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03210 glutathione S-transferase, N-terminal domain containing protein FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03220 RNA binding protein, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03230 nucleoside-triphosphatase, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03240 MATE efflux family protein, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03260 ligA, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03270 nucleoside-triphosphatase, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03280 transposon protein, putative, unclassified, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03290 nucleoside-triphosphatase, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03300 NAC domain transcription factor, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03310 no apical meristem protein, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03320 expressed protein FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03340 hypothetical protein FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03360 RNA-directed DNA polymerase, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03370 no apical meristem protein, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03380 expressed protein FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03390 FHA domain containing protein, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03400 ribosomal protein, putative, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03410 exostosin family domain containing protein, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03420 ZF-HD protein dimerisation region containing protein, expressed FN3821-S Chr11 1118001 1309000 0 0 Deletion 190999 LOC_Os11g03430 CDC45B - Putative DNA replication initiation protein, expressed FN3821-S Chr11 19540327 T-A 0 0 Single Base Substitution 0 HET FN3821-S Chr11 21768112 T-A 0 0 Single Base Substitution 0 HET FN3821-S Chr11 23816458 G-A 0 0 Single Base Substitution 0 Homo FN3821-S Chr11 26257550 Chr4 6930403 0 Translocation 0 FN3821-S Chr11 7073666 Chr7 17406846 0 Translocation 0 LOC_Os07g29610 PQ loop repeat domain containing protein, expressed FN3821-S Chr11 7073666 Chr7 17406846 0 Translocation 0 LOC_Os11g12590 expressed protein FN3821-S Chr11 7969526 G-A 0 0 Single Base Substitution 0 Homo FN3821-S Chr12 12659043 G-C 0 0 Single Base Substitution 0 Homo FN3821-S Chr12 19763492 Chr5 28571090 0 Translocation 0 FN3821-S Chr12 25263309 A-T 0 0 Single Base Substitution 0 Homo FN3821-S Chr2 19970675 19970688 0 0 Deletion 13 HET FN3821-S Chr2 20797322 T-A 0 0 Single Base Substitution 0 HET FN3821-S Chr2 23854570 23854584 0 0 Deletion 14 HET FN3821-S Chr2 29600594 A-G 0 0 Single Base Substitution 0 Homo FN3821-S Chr2 35768869 35768870 0 0 Deletion 1 HET FN3821-S Chr2 35793470 G-T 0 0 Single Base Substitution 0 HET FN3821-S Chr2 4273887 C-T 0 0 Single Base Substitution 0 Homo FN3821-S Chr2 4273888 C-T 0 0 Single Base Substitution 0 Homo FN3821-S Chr2 7332111 7332113 0 0 Deletion 2 HET FN3821-S Chr3 10591478 G-T 0 0 Single Base Substitution 0 HET FN3821-S Chr3 12389061 A-T 0 0 Single Base Substitution 0 Homo FN3821-S Chr3 21614650 G-A 0 0 Single Base Substitution 0 Homo FN3821-S Chr3 32170943 C-T 0 0 Single Base Substitution 0 Homo FN3821-S Chr3 36030893 G-A 0 0 Single Base Substitution 0 HET FN3821-S Chr3 8721892 T-C 0 0 Single Base Substitution 0 HET FN3821-S Chr3 9275067 C-G 0 0 Single Base Substitution 0 HET FN3821-S Chr4 10357024 C-A 0 0 Single Base Substitution 0 HET FN3821-S Chr4 14531179 G-A 0 0 Single Base Substitution 0 HET FN3821-S Chr4 14531180 G-T 0 0 Single Base Substitution 0 HET FN3821-S Chr4 25084877 T-C 0 0 Single Base Substitution 0 HET FN3821-S Chr4 2900973 2900992 0 0 Deletion 19 frameshift_variant Homo LOC_Os04g05670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3821-S Chr4 29013633 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g48660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3821-S Chr4 31339041 G-T 0 0 Single Base Substitution 0 HET FN3821-S Chr4 7685325 T-C 0 0 Single Base Substitution 0 HET FN3821-S Chr5 12200594 12200608 0 0 Deletion 14 Homo FN3821-S Chr5 18543151 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g31850 retrotransposon protein, putative, unclassified, expressed FN3821-S Chr5 2330387 G-A 0 0 Single Base Substitution 0 HET FN3821-S Chr5 23308187 C-T 0 0 Single Base Substitution 0 HET FN3821-S Chr5 26456406 C-T 0 0 Single Base Substitution 0 HET FN3821-S Chr6 7838899 A-T 0 0 Single Base Substitution 0 HET FN3821-S Chr6 8123250 8123250 0 0 Insertion 2 HET FN3821-S Chr6 8350260 A-T 0 0 Single Base Substitution 0 HET FN3821-S Chr6 8803940 C-G 0 0 Single Base Substitution 0 HET FN3821-S Chr7 1543329 Chr6 20645927 0 Translocation 0 LOC_Os06g35420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3821-S Chr7 1543329 Chr6 20645927 0 Translocation 0 LOC_Os07g03760 26S proteasome non-ATPase regulatory subunit 14, putative, expressed FN3821-S Chr7 1784861 1784895 0 0 Deletion 34 frameshift_variant Homo LOC_Os07g04170 OsMADS90 - MADS-box family gene with M-beta type-box, expressed FN3821-S Chr7 21796332 G-A 0 0 Single Base Substitution 0 HET FN3821-S Chr7 26344568 A-G 0 0 Single Base Substitution 0 HET FN3821-S Chr7 2694509 2694517 0 0 Deletion 8 Homo FN3821-S Chr7 3854614 3854618 0 0 Deletion 4 Homo FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30340 PAS2, putative, expressed FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30360 retrotransposon protein, putative, Ty1-copia subclass FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30370 expressed protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30380 expressed protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30400 retrotransposon protein, putative, unclassified, expressed FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30410 expressed protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30420 hypothetical protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30430 expressed protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30440 expressed protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30450 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30460 expressed protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30470 expressed protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30480 clathrin adaptor complex small chain domain containing protein, expressed FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30490 expressed protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30500 expressed protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30510 expressed protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30520 plant protein of unknown function domain containing protein, expressed FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30540 expressed protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30550 retrotransposon protein, putative, unclassified, expressed FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30554 expressed protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30560 expressed protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30580 hypothetical protein FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30590 C1-like domain containing protein, expressed FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30610 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3821-S Chr8 18677001 18874000 0 0 Deletion 196999 LOC_Os08g30620 expressed protein FN3821-S Chr8 18677494 19094541 0 0 Inversion 0 LOC_Os08g30340 PAS2, putative, expressed FN3821-S Chr8 18774376 18774376 0 0 Insertion 4 HET FN3821-S Chr8 18774871 18774871 0 0 Insertion 4 HET FN3821-S Chr8 18871843 19094547 0 0 Inversion 0 FN3821-S Chr8 21371362 A-G 0 0 Single Base Substitution 0 HET FN3821-S Chr8 22165166 C-T 0 0 Single Base Substitution 0 HET FN3821-S Chr8 22566801 22566802 0 0 Deletion 1 HET FN3821-S Chr8 2659379 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g05140 expressed protein FN3821-S Chr8 9591475 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g15800 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3821-S Chr9 14701856 A-G 0 0 Single Base Substitution 0 HET FN3821-S Chr9 18885541 18885545 0 0 Deletion 4 frameshift_variant HET LOC_Os09g31400 ethylene-insensitive 3, putative, expressed FN3821-S Chr9 20849667 G-A 0 0 Single Base Substitution 0 HET FN3821-S Chr9 22299748 T-A 0 0 Single Base Substitution 0 HET FN3821-S Chr9 22299749 C-T 0 0 Single Base Substitution 0 HET FN3821-S Chr9 3040172 3040183 0 0 Deletion 11 HET FN3821-S Chr9 6478901 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g11600 retrotransposon protein, putative, unclassified, expressed FN3821-S Chr9 7746610 7746616 0 0 Deletion 6 Homo FN3821-S Chr9 830320 A-G 0 0 Single Base Substitution 0 Homo FN3821-S Chr9 8482445 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g14360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3821-S Chr9 9013014 C-T 0 0 Single Base Substitution 0 HET FN3821-S Chr9 9069692 G-A 0 0 Single Base Substitution 0 HET FN3821-S Chr9 9652758 A-G 0 0 Single Base Substitution 0 HET