FN3833-S Chr1 10040117 10040125 0 0 Deletion 8 frameshift_variant HET LOC_Os01g17460 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr1 12839866 G-A 0 0 Single Base Substitution 0 HET FN3833-S Chr1 14767928 G-A 0 0 Single Base Substitution 0 HET FN3833-S Chr1 34176554 T-A 0 0 Single Base Substitution 0 HET FN3833-S Chr1 83230 83230 0 0 Insertion 4 HET FN3833-S Chr10 1077647 G-A 0 0 Single Base Substitution 0 Homo FN3833-S Chr10 1913225 A-T 0 0 Single Base Substitution 0 HET FN3833-S Chr10 22428508 T-C 0 0 Single Base Substitution 0 HET FN3833-S Chr11 13767469 C-T 0 0 Single Base Substitution 0 HET FN3833-S Chr11 16997641 Chr2 474658 0 Translocation 0 FN3833-S Chr11 19879100 Chr3 1946822 0 Translocation 0 LOC_Os03g04230 transposon protein, putative, unclassified, expressed FN3833-S Chr11 24756776 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g41300 MBTB65 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3833-S Chr11 9918001 C-T 0 0 Single Base Substitution 0 HET FN3833-S Chr12 11556599 T-C 0 0 Single Base Substitution 0 Homo FN3833-S Chr12 12965107 C-T 0 0 Single Base Substitution 0 HET FN3833-S Chr12 16195933 G-T 0 0 Single Base Substitution 0 Homo FN3833-S Chr12 16839384 16839387 0 0 Deletion 3 HET FN3833-S Chr12 23132351 Chr2 691366 0 Translocation 0 LOC_Os02g02210 aminotransferase, putative, expressed FN3833-S Chr2 10074660 10074661 0 0 Deletion 1 Homo FN3833-S Chr2 13291313 A-T 0 0 Single Base Substitution 0 HET FN3833-S Chr2 15385425 T-C 0 0 Single Base Substitution 0 HET FN3833-S Chr2 33091637 33091649 0 0 Deletion 12 splice_donor_variant&splice_region_variant&5_prime_UTR_variant&intron_variant Homo LOC_Os02g54020 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3833-S Chr2 5770337 T-A 0 0 Single Base Substitution 0 Homo FN3833-S Chr2 6179001 6192000 0 0 Deletion 12999 LOC_Os02g11930 receptor-like protein kinase precursor, putative, expressed FN3833-S Chr2 6179001 6192000 0 0 Deletion 12999 LOC_Os02g11940 sterol glucosyltransferase, putative, expressed FN3833-S Chr3 13861003 13861009 0 0 Deletion 6 HET FN3833-S Chr3 14098540 A-T 0 0 Single Base Substitution 0 HET FN3833-S Chr3 14629446 C-T 0 0 Single Base Substitution 0 HET FN3833-S Chr3 15515608 15515616 0 0 Deletion 8 HET FN3833-S Chr3 18252043 C-A 0 0 Single Base Substitution 0 Homo FN3833-S Chr3 18764385 18764388 0 0 Deletion 3 HET FN3833-S Chr3 23209851 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g41790 retrotransposon, putative, centromere-specific, expressed FN3833-S Chr3 31891039 A-T 0 0 Single Base Substitution 0 HET FN3833-S Chr3 3987314 4314597 0 0 Inversion 0 LOC_Os03g07840 adenylosuccinate synthetase, chloroplast precursor, putative, expressed FN3833-S Chr3 3987323 4314601 0 0 Inversion 0 LOC_Os03g07840 adenylosuccinate synthetase, chloroplast precursor, putative, expressed FN3833-S Chr4 25973003 25973008 0 0 Deletion 5 HET FN3833-S Chr4 28656633 28656636 0 0 Deletion 3 HET FN3833-S Chr4 29209418 Chr2 24568877 0 Translocation 0 FN3833-S Chr4 30403704 C-T 0 0 Single Base Substitution 0 HET FN3833-S Chr5 15065997 C-T 0 0 Single Base Substitution 0 Homo FN3833-S Chr5 1724749 T-C 0 0 Single Base Substitution 0 HET FN3833-S Chr5 21286688 21286690 0 0 Deletion 2 HET FN3833-S Chr5 21334299 A-T 0 0 Single Base Substitution 0 HET FN3833-S Chr5 3138424 T-C 0 0 Single Base Substitution 0 HET FN3833-S Chr5 4306677 4306678 0 0 Deletion 1 HET FN3833-S Chr5 6790365 6790368 0 0 Deletion 3 HET FN3833-S Chr5 8120929 T-C 0 0 Single Base Substitution 0 Homo FN3833-S Chr6 12906799 A-C 0 0 Single Base Substitution 0 HET FN3833-S Chr7 13716001 13792000 0 0 Deletion 75999 LOC_Os07g24160 expressed protein FN3833-S Chr7 13716001 13792000 0 0 Deletion 75999 LOC_Os07g24170 expressed protein FN3833-S Chr7 13716001 13792000 0 0 Deletion 75999 LOC_Os07g24180 retrotransposon protein, putative, unclassified FN3833-S Chr7 13716001 13792000 0 0 Deletion 75999 LOC_Os07g24190 CESA3 - cellulose synthase, expressed FN3833-S Chr7 13716001 13792000 0 0 Deletion 75999 LOC_Os07g24200 expressed protein FN3833-S Chr7 13716001 13792000 0 0 Deletion 75999 LOC_Os07g24210 hypothetical protein FN3833-S Chr7 13716001 13792000 0 0 Deletion 75999 LOC_Os07g24220 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13716001 13792000 0 0 Deletion 75999 LOC_Os07g24230 integral membrane transporter family protein, putative, expressed FN3833-S Chr7 13716001 13792000 0 0 Deletion 75999 LOC_Os07g24240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13716001 13792000 0 0 Deletion 75999 LOC_Os07g24250 retrotransposon protein, putative, unclassified FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24310 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24320 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24330 conserved hypothetical protein FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24340 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24350 homeobox domain containing protein, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24370 retrotransposon protein, putative, unclassified FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24380 retrotransposon protein, putative, unclassified FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24410 retrotransposon protein, putative, unclassified FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24420 retrotransposon protein, putative, Ty3-gypsy subclass FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24430 retrotransposon protein, putative, Ty3-gypsy subclass FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24450 retrotransposon protein, putative, unclassified FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24460 retrotransposon protein, putative, unclassified FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24480 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24498 transposon protein, putative, unclassified FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24530 retrotransposon protein, putative, unclassified FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24540 retrotransposon protein, putative, unclassified FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24549 transposon protein, putative, unclassified FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24560 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24569 transposon protein, putative, unclassified FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24578 transposon protein, putative, unclassified FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24590 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24610 retrotransposon protein, putative, Ty3-gypsy subclass FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24620 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24630 retrotransposon, putative, centromere-specific FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24670 retrotransposon protein, putative, Ty3-gypsy subclass FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24680 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24690 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24710 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24720 retrotransposon protein, putative, unclassified FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24730 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24760 retrotransposon protein, putative, Ty3-gypsy subclass FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24770 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24780 retrotransposon protein, putative, Ty3-gypsy subclass FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24800 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24810 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24820 thionin-like peptide, putative, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24830 thionin-like peptide, putative, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24840 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24850 retrotransposon protein, putative, unclassified, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24870 expressed protein FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24890 expressed protein FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24900 retrotransposon protein, putative, Ty3-gypsy subclass FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24920 transposon protein, putative, unclassified FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24950 expressed protein FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24960 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3833-S Chr7 13817001 14222000 0 0 Deletion 404999 LOC_Os07g24970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 14251001 14325000 0 0 Deletion 73999 LOC_Os07g25010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 14251001 14325000 0 0 Deletion 73999 LOC_Os07g25030 transposon protein, putative, CACTA, En/Spm sub-class FN3833-S Chr7 14251001 14325000 0 0 Deletion 73999 LOC_Os07g25040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr7 14251001 14325000 0 0 Deletion 73999 LOC_Os07g25050 thionin-like peptide, putative, expressed FN3833-S Chr7 14251001 14325000 0 0 Deletion 73999 LOC_Os07g25060 thionin-like peptide, putative, expressed FN3833-S Chr7 14251001 14325000 0 0 Deletion 73999 LOC_Os07g25070 retrotransposon, putative, centromere-specific FN3833-S Chr7 14251001 14325000 0 0 Deletion 73999 LOC_Os07g25080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3833-S Chr8 10279673 Chr1 2398728 0 Translocation 0 FN3833-S Chr8 19932720 G-A 0 0 Single Base Substitution 0 HET FN3833-S Chr8 20578678 C-T 0 0 Single Base Substitution 0 HET FN3833-S Chr8 20853780 Chr1 17838366 0 Translocation 0 FN3833-S Chr8 3910505 3910506 0 0 Deletion 1 frameshift_variant HET LOC_Os08g07000 retrotransposon protein, putative, Ty3-gypsy subclass FN3833-S Chr8 7134034 G-A 0 0 Single Base Substitution 0 Homo FN3833-S Chr9 17055483 17055483 0 0 Insertion 1 HET FN3833-S Chr9 2067788 2067788 0 0 Insertion 2 HET FN3833-S Chr9 5722207 5722222 0 0 Deletion 15 disruptive_inframe_deletion HET LOC_Os09g10470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed