FN3838-S Chr1 16780372 16780373 0 0 Deletion 1 HET FN3838-S Chr1 16945452 16946101 0 0 Deletion 649 HET FN3838-S Chr1 24072577 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g42370 pleiotropic drug resistance protein, putative, expressed FN3838-S Chr1 26560084 26560091 0 0 Deletion 7 frameshift_variant HET LOC_Os01g46640 expressed protein FN3838-S Chr1 27197998 27198003 0 0 Deletion 5 Homo FN3838-S Chr1 31761061 31761067 0 0 Deletion 6 HET FN3838-S Chr1 39730126 C-A 0 0 Single Base Substitution 0 HET FN3838-S Chr1 40893093 C-T 0 0 Single Base Substitution 0 HET FN3838-S Chr10 1658670 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g03690 OsFBX346 - F-box domain containing protein, expressed FN3838-S Chr10 6183298 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g11160 retrotransposon protein, putative, unclassified FN3838-S Chr11 15175928 G-A 0 0 Single Base Substitution 0 HET FN3838-S Chr11 24057797 C-G 0 0 Single Base Substitution 0 Homo FN3838-S Chr11 3197898 G-T 0 0 Single Base Substitution 0 HET FN3838-S Chr11 3976042 3976043 0 0 Deletion 1 Homo FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04840 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04850 hypothetical protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04860 DTW domain containing protein, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04870 expressed protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04880 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04890 transposon protein, putative, unclassified FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04920 GRF zinc finger family protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04924 ubiquitin-like protein 5, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04930 ASH-like SPRY domain containing protein, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04934 GIY-YIG catalytic domain containing protein, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04940 splicing factor, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04960 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04970 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04980 DNA repair protein Rad51, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g04990 acyl-CoA synthetase protein, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05000 expressed protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05010 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05020 jasmonate-induced protein, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05030 expressed protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05040 heavy-metal-associated domain-containing protein, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05050 stem-specific protein TSJT1, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05060 expressed protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05070 expressed protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05080 PMR5, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05090 peptidyl-prolyl isomerase, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05110 pyruvate kinase, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05120 receptor kinase, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05130 expressed protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05144 hypothetical protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05151 hypothetical protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05160 transposon protein, putative, Mutator sub-class, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05170 expressed protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05180 avr9/Cf-9 rapidly elicited protein, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05190 expressed protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05200 DNA binding protein, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05210 expressed protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05220 expressed protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05230 ATP-dependent RNA helicase, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05240 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05250 hypothetical protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05260 phytosulfokines precursor, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05270 zinc finger, C3HC4 type domain containing protein, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05280 zinc finger, C3HC4 type domain containing protein, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05290 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05310 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05320 expressed protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05330 protein of unknown function containing protein, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05334 hypothetical protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05340 expressed protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05350 hypothetical protein FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05360 ligA, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05370 RING-H2 finger protein, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05380 glycosyltransferase, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05394 protein kinase, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05410 G10 protein, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05420 calmodulin-binding protein, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05430 ribosomal protein L24, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05440 cytochrome P450, putative, expressed FN3838-S Chr12 2071001 2495000 0 0 Deletion 423999 LOC_Os12g05450 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr12 2147144 Chr11 5073923 0 Translocation 0 FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05450 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05470 plastocyanin-like domain containing protein, putative, expressed FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05480 expressed protein FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05500 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05510 expressed protein FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05520 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05529 expressed protein FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05540 Ser/Thr protein phosphatase family protein, putative, expressed FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05550 sialyltransferase family domain containing protein, expressed FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05560 expressed protein FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05570 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05580 expressed protein FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05590 RCN3 Centroradialis-like1 homogous to TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05600 hydrolase, alpha/beta fold family protein, putative, expressed FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05609 OsFBO24 - F-box and other domain containing protein, expressed FN3838-S Chr12 2497001 2587000 0 0 Deletion 89999 LOC_Os12g05620 hypothetical protein FN3838-S Chr12 344706 G-C 0 0 Single Base Substitution 0 HET FN3838-S Chr12 3483693 3483694 0 0 Deletion 1 HET FN3838-S Chr12 4621959 T-C 0 0 Single Base Substitution 0 Homo FN3838-S Chr2 12678767 T-A 0 0 Single Base Substitution 0 HET FN3838-S Chr2 12678777 T-C 0 0 Single Base Substitution 0 HET FN3838-S Chr2 14908542 14908542 0 0 Insertion 182 HET FN3838-S Chr2 17259792 C-A 0 0 Single Base Substitution 0 Homo FN3838-S Chr2 34186144 G-A 0 0 Single Base Substitution 0 HET FN3838-S Chr2 4798057 A-G 0 0 Single Base Substitution 0 HET FN3838-S Chr2 6185173 6221496 0 0 Inversion 0 LOC_Os02g11930 receptor-like protein kinase precursor, putative, expressed FN3838-S Chr2 6185178 6221530 0 0 Inversion 0 LOC_Os02g11930 receptor-like protein kinase precursor, putative, expressed FN3838-S Chr2 8208532 C-A 0 0 Single Base Substitution 0 HET FN3838-S Chr3 10131412 C-G 0 0 Single Base Substitution 0 HET FN3838-S Chr3 11706481 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g20690 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21540 TKL_IRAK_CrRLK1L-1.8 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21550 eukaryotic translation initiation factor 2 subunit beta, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21560 photosystem II 11 kD protein, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21570 DNA-binding protein, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21580 expressed protein FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21590 expressed protein FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21600 expressed protein FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21610 expressed protein FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21620 AGC_AGC_other_RS6K_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21630 PRC-barrel domain protein, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21640 expressed protein FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21650 expressed protein FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21660 transposon protein, putative, unclassified, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21664 expressed protein FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21670 expressed protein FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21680 phospholipid-transporting ATPase, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21690 lung seven transmembrane domain containing protein, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21700 DNA-binding protein, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21710 WRKY79, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21720 vacuolar-sorting receptor precursor, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21730 receptor-like protein kinase precursor, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21740 valyl-tRNA synthetase, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21750 expressed protein FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21759 hypothetical protein FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21770 phosphoenolpyruvate carboxylase kinase, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21780 pentatricopeptide repeat domain containing protein, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21790 cupin domain containing protein, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21800 bZIP transcription factor family protein, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21810 insulin-degrading enzyme, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21820 expansin precursor, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21830 appr-1-p processing enzyme family protein, putative, expressed FN3838-S Chr3 12311001 12487000 0 0 Deletion 175999 LOC_Os03g21840 reticulon domain containing protein, putative, expressed FN3838-S Chr3 14943061 14943066 0 0 Deletion 5 HET FN3838-S Chr3 19100921 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g33420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3838-S Chr3 20164922 T-A 0 0 Single Base Substitution 0 HET FN3838-S Chr3 2572393 C-A 0 0 Single Base Substitution 0 HET FN3838-S Chr3 27639324 27639331 0 0 Deletion 7 Homo FN3838-S Chr4 21920965 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g35950 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr4 22948783 22948783 0 0 Insertion 3 HET FN3838-S Chr4 25481163 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g43050 Dicer, putative, expressed FN3838-S Chr4 32825756 G-A 0 0 Single Base Substitution 0 HET FN3838-S Chr4 3942825 3942831 0 0 Deletion 6 Homo FN3838-S Chr5 12665933 T-A 0 0 Single Base Substitution 0 HET FN3838-S Chr5 14006472 T-A 0 0 Single Base Substitution 0 HET FN3838-S Chr5 15237124 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g26180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3838-S Chr5 18916693 C-A 0 0 Single Base Substitution 0 HET FN3838-S Chr5 248502 248507 0 0 Deletion 5 frameshift_variant HET LOC_Os05g01430 polygalacturonase inhibitor 2 precursor, putative, expressed FN3838-S Chr5 24869796 T-G 0 0 Single Base Substitution 0 HET FN3838-S Chr5 29659755 T-C 0 0 Single Base Substitution 0 HET FN3838-S Chr5 5074213 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g09110 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr6 11613757 11613759 0 0 Deletion 2 HET FN3838-S Chr6 18190425 Chr3 8985228 0 Translocation 0 FN3838-S Chr6 22483108 22521710 0 0 Inversion 0 FN3838-S Chr6 23194508 23194509 0 0 Deletion 1 Homo FN3838-S Chr6 29710279 29710280 0 0 Deletion 1 Homo FN3838-S Chr6 31222648 C-T 0 0 Single Base Substitution 0 Homo FN3838-S Chr6 6332191 G-C 0 0 Single Base Substitution 0 HET FN3838-S Chr6 8763746 A-G 0 0 Single Base Substitution 0 HET FN3838-S Chr7 1437986 G-C 0 0 Single Base Substitution 0 Homo FN3838-S Chr7 14645129 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g25550 hAT dimerisation domain-containing protein, putative, expressed FN3838-S Chr7 18914708 18914710 0 0 Deletion 2 HET FN3838-S Chr7 19050411 C-A 0 0 Single Base Substitution 0 HET FN3838-S Chr7 22725969 G-A 0 0 Single Base Substitution 0 Homo FN3838-S Chr7 5963369 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g10900 retrotransposon protein, putative, Ty1-copia subclass FN3838-S Chr7 7241624 7241626 0 0 Deletion 2 HET FN3838-S Chr7 9801555 C-T 0 0 Single Base Substitution 0 HET FN3838-S Chr8 14024680 G-A 0 0 Single Base Substitution 0 HET FN3838-S Chr8 14368835 T-A 0 0 Single Base Substitution 0 HET FN3838-S Chr8 21922302 21922305 0 0 Deletion 3 HET FN3838-S Chr8 23233978 G-A 0 0 Single Base Substitution 0 Homo FN3838-S Chr8 23681849 23681857 0 0 Deletion 8 Homo FN3838-S Chr8 27301247 27301429 0 0 Inversion 0 FN3838-S Chr8 27330659 G-C 0 0 Single Base Substitution 0 HET FN3838-S Chr8 4162163 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g07410 retrotransposon protein, putative, unclassified, expressed FN3838-S Chr8 5763547 C-A 0 0 Single Base Substitution 0 HET FN3838-S Chr9 13492133 C-A 0 0 Single Base Substitution 0 HET FN3838-S Chr9 16194153 T-A 0 0 Single Base Substitution 0 HET FN3838-S Chr9 1862146 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g03690 expressed protein FN3838-S Chr9 19929999 G-C 0 0 Single Base Substitution 0 HET FN3838-S Chr9 331362 331362 0 0 Insertion 6 HET FN3838-S Chr9 4645796 C-T 0 0 Single Base Substitution 0 Homo FN3838-S Chr9 4645797 C-G 0 0 Single Base Substitution 0 Homo FN3838-S Chr9 5682052 T-C 0 0 Single Base Substitution 0 HET