FN3839-S Chr1 10986154 C-T 0 0 Single Base Substitution 0 HET FN3839-S Chr1 17864893 G-A 0 0 Single Base Substitution 0 HET FN3839-S Chr1 17979500 C-T 0 0 Single Base Substitution 0 HET FN3839-S Chr1 33180696 T-A 0 0 Single Base Substitution 0 HET FN3839-S Chr1 36541671 36541672 0 0 Deletion 1 HET FN3839-S Chr10 18735343 18735351 0 0 Deletion 8 HET FN3839-S Chr10 4829298 G-A 0 0 Single Base Substitution 0 HET FN3839-S Chr10 7311625 7374660 0 0 Inversion 0 FN3839-S Chr10 7374700 7771184 0 0 Inversion 0 LOC_Os10g14830 retrotransposon protein, putative, Ty3-gypsy subclass FN3839-S Chr11 10004191 T-A 0 0 Single Base Substitution 0 HET FN3839-S Chr11 11519771 C-A 0 0 Single Base Substitution 0 HET FN3839-S Chr11 14212861 14212867 0 0 Deletion 6 HET FN3839-S Chr11 14844510 Chr1 25620334 0 Translocation 0 LOC_Os11g25980 phospholipid-transporting ATPase 2, putative, expressed FN3839-S Chr11 14844536 Chr1 25603298 0 Translocation 0 LOC_Os11g25980 phospholipid-transporting ATPase 2, putative, expressed FN3839-S Chr11 26561210 26561211 0 0 Deletion 1 frameshift_variant Homo LOC_Os11g43970 AAA-type ATPase family protein, putative, expressed FN3839-S Chr11 8238788 T-G 0 0 Single Base Substitution 0 Homo FN3839-S Chr11 8653735 Chr6 15647000 0 Translocation 0 LOC_Os11g15310 methyltransferase, putative, expressed FN3839-S Chr11 8653776 Chr6 15646648 0 Translocation 0 LOC_Os11g15310 methyltransferase, putative, expressed FN3839-S Chr11 9783639 9783639 0 0 Insertion 1 HET FN3839-S Chr12 14762577 C-T 0 0 Single Base Substitution 0 HET FN3839-S Chr12 14762578 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os12g25510 retrotransposon protein, putative, unclassified, expressed FN3839-S Chr12 14762579 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g25510 retrotransposon protein, putative, unclassified, expressed FN3839-S Chr12 1949216 G-A 0 0 Single Base Substitution 0 HET FN3839-S Chr12 20240046 A-T 0 0 Single Base Substitution 0 HET FN3839-S Chr12 20240048 T-A 0 0 Single Base Substitution 0 HET FN3839-S Chr12 21247509 21247511 0 0 Deletion 2 HET FN3839-S Chr12 22400206 A-T 0 0 Single Base Substitution 0 HET FN3839-S Chr12 8391730 T-C 0 0 Single Base Substitution 0 HET FN3839-S Chr2 10138651 G-A 0 0 Single Base Substitution 0 HET FN3839-S Chr2 11722189 C-T 0 0 Single Base Substitution 0 Homo FN3839-S Chr2 13324030 13324036 0 0 Deletion 6 inframe_deletion HET LOC_Os02g22300 retrotransposon protein, putative, Ty3-gypsy subclass FN3839-S Chr2 15513158 15513158 0 0 Insertion 24 HET FN3839-S Chr2 20282309 T-A 0 0 Single Base Substitution 0 HET FN3839-S Chr2 28211868 T-A 0 0 Single Base Substitution 0 Homo FN3839-S Chr2 30000984 30000989 0 0 Deletion 5 splice_donor_variant&inframe_deletion&splice_region_variant&intron_variant HET LOC_Os02g49070 ZAC, putative, expressed FN3839-S Chr2 7974871 7974884 0 0 Deletion 13 Homo FN3839-S Chr3 17819985 17820007 0 0 Deletion 22 HET FN3839-S Chr3 19399716 T-C 0 0 Single Base Substitution 0 HET FN3839-S Chr3 7592491 7592502 0 0 Deletion 11 frameshift_variant HET LOC_Os03g14000 acyl CoA binding protein, putative, expressed FN3839-S Chr4 12080001 12157000 0 0 Deletion 76999 LOC_Os04g21380 retrotransposon protein, putative, unclassified, expressed FN3839-S Chr4 12080001 12157000 0 0 Deletion 76999 LOC_Os04g21390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3839-S Chr4 12080001 12157000 0 0 Deletion 76999 LOC_Os04g21400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3839-S Chr4 12080001 12157000 0 0 Deletion 76999 LOC_Os04g21410 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3839-S Chr4 12080001 12157000 0 0 Deletion 76999 LOC_Os04g21420 retrotransposon protein, putative, unclassified FN3839-S Chr4 12080001 12157000 0 0 Deletion 76999 LOC_Os04g21430 expressed protein FN3839-S Chr4 12080001 12157000 0 0 Deletion 76999 LOC_Os04g21450 retrotransposon, putative, centromere-specific FN3839-S Chr4 12080001 12157000 0 0 Deletion 76999 LOC_Os04g21460 expressed protein FN3839-S Chr4 12080001 12157000 0 0 Deletion 76999 LOC_Os04g21470 PPR repeat domain containing protein, putative, expressed FN3839-S Chr4 12080001 12157000 0 0 Deletion 76999 LOC_Os04g21480 retrotransposon protein, putative, unclassified, expressed FN3839-S Chr4 12080001 12157000 0 0 Deletion 76999 LOC_Os04g21490 conserved hypothetical protein FN3839-S Chr4 12080001 12157000 0 0 Deletion 76999 LOC_Os04g21500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3839-S Chr4 12160001 12203000 0 0 Deletion 42999 LOC_Os04g21500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3839-S Chr4 12160001 12203000 0 0 Deletion 42999 LOC_Os04g21510 transposon protein, putative, CACTA, En/Spm sub-class FN3839-S Chr4 12160001 12203000 0 0 Deletion 42999 LOC_Os04g21520 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3839-S Chr4 12160001 12203000 0 0 Deletion 42999 LOC_Os04g21530 transposon protein, putative, CACTA, En/Spm sub-class FN3839-S Chr4 12160001 12203000 0 0 Deletion 42999 LOC_Os04g21560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3839-S Chr4 12160001 12203000 0 0 Deletion 42999 LOC_Os04g21570 fasciclin-like arabinogalactan precursor protein, putative, expressed FN3839-S Chr4 12205001 12260000 0 0 Deletion 54999 LOC_Os04g21580 retrotransposon protein, putative, unclassified, expressed FN3839-S Chr4 12205001 12260000 0 0 Deletion 54999 LOC_Os04g21590 PB1 domain containing protein, expressed FN3839-S Chr4 12205001 12260000 0 0 Deletion 54999 LOC_Os04g21600 expressed protein FN3839-S Chr4 12205001 12260000 0 0 Deletion 54999 LOC_Os04g21610 expressed protein FN3839-S Chr4 12205001 12260000 0 0 Deletion 54999 LOC_Os04g21620 hypothetical protein FN3839-S Chr4 12205001 12260000 0 0 Deletion 54999 LOC_Os04g21640 hypothetical protein FN3839-S Chr4 12205001 12260000 0 0 Deletion 54999 LOC_Os04g21650 expressed protein FN3839-S Chr4 12205001 12260000 0 0 Deletion 54999 LOC_Os04g21660 AAA-type ATPase family protein, putative, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21705 PB1 domain containing protein, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21710 expressed protein FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21720 N2, N2-dimethylguanosine tRNA methyltransferase, putative, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21730 XH domain containing protein FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21740 expressed protein FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21780 expressed protein FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21790 OsWAK34 - OsWAK receptor-like protein kinase, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21800 retrotransposon protein, putative, LINE subclass FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21810 transposon protein, putative, unclassified, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21820 OsWAK33 - OsWAK receptor-like protein OsWAK-RLP, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21830 hypothetical protein FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21840 expressed protein FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21850 expressed protein FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21860 transposon protein, putative, Pong sub-class, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21870 transposon protein, putative, Pong sub-class, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21880 expressed protein FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21890 disease resistance protein RPM1, putative, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21900 expressed protein FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21910 pentatricopeptide, putative, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21920 transposon protein, putative, CACTA, En/Spm sub-class FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21930 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21940 expressed protein FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21950 WRKY51, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21960 retrotransposon protein, putative, unclassified, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21970 retrotransposon protein, putative, unclassified FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21980 retrotransposon protein, putative, unclassified, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g21990 retrotransposon protein, putative, unclassified, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g22000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g22010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g22020 retrotransposon protein, putative, unclassified, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g22030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g22040 hypothetical protein FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g22050 retrotransposon protein, putative, unclassified, expressed FN3839-S Chr4 12273001 12491000 0 0 Deletion 217999 LOC_Os04g22060 retrotransposon protein, putative, unclassified, expressed FN3839-S Chr4 15998318 A-C 0 0 Single Base Substitution 0 HET FN3839-S Chr4 2124753 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g04470 retrotransposon, putative, centromere-specific, expressed FN3839-S Chr4 24078106 24078127 0 0 Deletion 21 HET FN3839-S Chr4 33999505 33999517 0 0 Deletion 12 HET FN3839-S Chr4 34890346 C-G 0 0 Single Base Substitution 0 HET FN3839-S Chr4 5931288 C-G 0 0 Single Base Substitution 0 HET FN3839-S Chr4 9974697 G-C 0 0 Single Base Substitution 0 HET FN3839-S Chr5 27816315 27816316 0 0 Deletion 1 HET FN3839-S Chr5 4615911 Chr3 5945872 0 Translocation 0 FN3839-S Chr5 7133926 A-G 0 0 Single Base Substitution 0 HET FN3839-S Chr6 11233843 Chr3 19410021 0 Translocation 0 LOC_Os03g34030 hypothetical protein FN3839-S Chr6 12597292 G-A 0 0 Single Base Substitution 0 HET FN3839-S Chr6 12597296 T-C 0 0 Single Base Substitution 0 HET FN3839-S Chr6 12597298 G-A 0 0 Single Base Substitution 0 HET FN3839-S Chr6 14073557 A-C 0 0 Single Base Substitution 0 HET FN3839-S Chr6 26753021 G-C 0 0 Single Base Substitution 0 HET FN3839-S Chr7 14787007 G-A 0 0 Single Base Substitution 0 HET FN3839-S Chr7 23979619 23979629 0 0 Deletion 10 HET FN3839-S Chr8 18686957 C-A 0 0 Single Base Substitution 0 HET FN3839-S Chr8 18900978 G-A 0 0 Single Base Substitution 0 HET FN3839-S Chr8 22509329 22509329 0 0 Insertion 1 HET FN3839-S Chr8 6311645 6311646 0 0 Deletion 1 HET FN3839-S Chr8 8658513 8658519 0 0 Deletion 6 HET FN3839-S Chr8 9941035 C-T 0 0 Single Base Substitution 0 HET FN3839-S Chr9 13480591 C-T 0 0 Single Base Substitution 0 HET FN3839-S Chr9 14806864 14806864 0 0 Insertion 2 HET FN3839-S Chr9 1493888 Chr5 10967088 0 Translocation 0 LOC_Os05g18890 transposon protein, putative, unclassified FN3839-S Chr9 16878236 C-G 0 0 Single Base Substitution 0 HET FN3839-S Chr9 18145402 A-C 0 0 Single Base Substitution 0 HET FN3839-S Chr9 2358099 2358110 0 0 Deletion 11 frameshift_variant HET LOC_Os09g04440 DNA-binding protein, putative, expressed FN3839-S Chr9 5497492 T-G 0 0 Single Base Substitution 0 HET FN3839-S Chr9 5809344 5809346 0 0 Deletion 2 HET