FN3842-S Chr1 17513038 17513043 0 0 Deletion 5 Homo FN3842-S Chr1 25248045 G-C 0 0 Single Base Substitution 0 Homo FN3842-S Chr1 33901762 T-A 0 0 Single Base Substitution 0 Homo FN3842-S Chr1 41509428 G-A 0 0 Single Base Substitution 0 HET FN3842-S Chr1 41821743 G-T 0 0 Single Base Substitution 0 Homo FN3842-S Chr1 7588758 7588758 0 0 Insertion 4 Homo FN3842-S Chr1 9949853 G-A 0 0 Single Base Substitution 0 HET FN3842-S Chr10 10126824 C-T 0 0 Single Base Substitution 0 HET FN3842-S Chr10 11556110 C-T 0 0 Single Base Substitution 0 HET FN3842-S Chr10 11998407 11998408 0 0 Deletion 1 HET FN3842-S Chr10 15820189 C-T 0 0 Single Base Substitution 0 HET FN3842-S Chr10 16093888 C-T 0 0 Single Base Substitution 0 HET FN3842-S Chr10 164478 Chr5 14966498 0 Translocation 0 FN3842-S Chr10 2010018 C-T 0 0 Single Base Substitution 0 HET FN3842-S Chr10 5265487 Chr6 11799779 0 Translocation 0 FN3842-S Chr10 5720401 Chr2 24465250 0 Translocation 0 LOC_Os02g40400 expressed protein FN3842-S Chr10 8060450 Chr5 16540437 0 Translocation 0 LOC_Os05g28250 retrotransposon, putative, centromere-specific FN3842-S Chr10 8060450 Chr5 16540437 0 Translocation 0 LOC_Os10g15190 retrotransposon protein, putative, unclassified, expressed FN3842-S Chr11 15465484 15465484 0 0 Insertion 2 HET FN3842-S Chr11 22257543 A-T 0 0 Single Base Substitution 0 HET FN3842-S Chr11 22656712 Chr1 10834620 0 Translocation 0 FN3842-S Chr12 11015377 C-T 0 0 Single Base Substitution 0 Homo FN3842-S Chr12 1216371 C-A 0 0 Single Base Substitution 0 Homo FN3842-S Chr12 1482577 Chr2 9635657 0 Translocation 0 LOC_Os12g03680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3842-S Chr12 20565960 C-T 0 0 Single Base Substitution 0 Homo FN3842-S Chr12 24607011 Chr5 2957584 0 Translocation 0 FN3842-S Chr12 26046676 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g42010 lipase class 3 family protein, putative, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14180 transposon protein, putative, CACTA, En/Spm sub-class FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14200 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14210 expressed protein FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14220 expressed protein FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14224 expressed protein FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14230 expressed protein FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14250 retrotransposon protein, putative, unclassified, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14270 retrotransposon protein, putative, unclassified, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14310 expressed protein FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14320 expressed protein FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14330 disease resistance protein RPM1, putative, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14340 hypothetical protein FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14350 transposon protein, putative, CACTA, En/Spm sub-class FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14360 transposon protein, putative, unclassified, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14374 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14420 retrotransposon protein, putative, Ty3-gypsy subclass FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14430 retrotransposon protein, putative, unclassified, expressed FN3842-S Chr12 8050001 8241000 0 0 Deletion 190999 LOC_Os12g14440 Jacalin-like lectin domain containing protein, putative, expressed FN3842-S Chr12 8261364 Chr1 10113261 0 Translocation 0 FN3842-S Chr12 8261399 Chr1 10113728 0 Translocation 0 LOC_Os01g18060 sugar transporter superfamily, putative, expressed FN3842-S Chr2 1587011 1587011 0 0 Insertion 2 HET FN3842-S Chr2 6842392 6842394 0 0 Deletion 2 HET FN3842-S Chr3 11015129 A-G 0 0 Single Base Substitution 0 HET FN3842-S Chr3 14688288 Chr1 3006849 0 Translocation 0 FN3842-S Chr3 16174817 G-A 0 0 Single Base Substitution 0 HET FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30510 expressed protein FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30519 expressed protein FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30530 expressed protein FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30550 RNA-binding protein-like, putative, expressed FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30570 protein of unknown function DUF1675 domain containing protein, expressed FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30580 expressed protein FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30590 expressed protein FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30600 expressed protein FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30610 ubiquinone oxidoreductase, putative, expressed FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30620 expressed protein FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30630 expressed protein FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30640 expressed protein FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30650 expressed protein FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30660 expressed protein FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30670 expressed protein FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30680 expressed protein FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30690 expressed protein FN3842-S Chr3 17405001 17495000 0 0 Deletion 89999 LOC_Os03g30700 retrotransposon protein, putative, unclassified, expressed FN3842-S Chr3 17407830 Chr1 10142144 0 Translocation 0 LOC_Os03g30510 expressed protein FN3842-S Chr3 17489202 Chr1 10137651 0 Translocation 0 LOC_Os01g18100 OsRhmbd3 - Putative Rhomboid homologue, expressed FN3842-S Chr3 17489202 Chr1 10137651 0 Translocation 0 LOC_Os03g30700 retrotransposon protein, putative, unclassified, expressed FN3842-S Chr3 35508446 A-G 0 0 Single Base Substitution 0 Homo FN3842-S Chr3 3797314 3797316 0 0 Deletion 2 HET FN3842-S Chr3 5166990 G-T 0 0 Single Base Substitution 0 HET FN3842-S Chr4 1618700 1618703 0 0 Deletion 3 HET FN3842-S Chr4 18160707 C-T 0 0 Single Base Substitution 0 HET FN3842-S Chr4 19353424 19353424 0 0 Insertion 1 HET FN3842-S Chr4 25535347 25535351 0 0 Deletion 4 Homo FN3842-S Chr4 33934334 33934342 0 0 Deletion 8 HET FN3842-S Chr5 12374099 12374106 0 0 Deletion 7 frameshift_variant Homo LOC_Os05g21040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3842-S Chr5 1533696 A-T 0 0 Single Base Substitution 0 HET FN3842-S Chr5 15388851 15388851 0 0 Insertion 2 HET FN3842-S Chr5 17889296 A-G 0 0 Single Base Substitution 0 Homo FN3842-S Chr5 21998763 21998763 0 0 Insertion 1 HET FN3842-S Chr5 27542771 A-C 0 0 Single Base Substitution 0 Homo FN3842-S Chr6 12934321 12934662 0 0 Inversion 0 LOC_Os06g22290 legume lectins beta domain containing protein, expressed FN3842-S Chr6 17523889 17523889 0 0 Insertion 4 frameshift_variant&stop_gained HET LOC_Os06g30340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3842-S Chr6 19896233 C-T 0 0 Single Base Substitution 0 HET FN3842-S Chr7 19346095 T-C 0 0 Single Base Substitution 0 HET FN3842-S Chr8 11114630 G-A 0 0 Single Base Substitution 0 HET FN3842-S Chr8 11114631 C-A 0 0 Single Base Substitution 0 HET FN3842-S Chr8 125683 125683 0 0 Insertion 3 HET FN3842-S Chr8 13574926 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g22540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3842-S Chr8 20570090 20825076 0 0 Inversion 0 FN3842-S Chr8 20570098 20825080 0 0 Inversion 0 FN3842-S Chr8 21759933 21759958 0 0 Deletion 25 frameshift_variant HET LOC_Os08g34640 receptor-like protein kinase precursor, putative, expressed FN3842-S Chr8 5903759 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g10180 retrotransposon protein, putative, unclassified, expressed FN3842-S Chr8 6505363 6505366 0 0 Deletion 3 HET FN3842-S Chr8 8154664 8154671 0 0 Deletion 7 HET FN3842-S Chr9 1683656 Chr3 25422296 0 Translocation 0 LOC_Os03g45040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3842-S Chr9 1683656 Chr3 25422296 0 Translocation 0 LOC_Os09g03410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3842-S Chr9 18675201 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g31060 expressed protein FN3842-S Chr9 2082612 2082613 0 0 Deletion 1 HET FN3842-S Chr9 3212447 Chr6 18136411 0 Translocation 0 LOC_Os06g31200 retrotransposon protein, putative, unclassified, expressed