FN3844-S Chr1 12027580 G-A 0 0 Single Base Substitution 0 HET FN3844-S Chr1 13399696 C-A 0 0 Single Base Substitution 0 HET FN3844-S Chr1 22567184 22567195 0 0 Deletion 11 frameshift_variant HET LOC_Os01g40010 retrotransposon protein, putative, unclassified, expressed FN3844-S Chr1 31742972 C-A 0 0 Single Base Substitution 0 HET FN3844-S Chr1 662794 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g02210 retrotransposon protein, putative, Ty3-gypsy subclass FN3844-S Chr10 18179087 Chr6 20502511 0 Translocation 0 LOC_Os06g35170 expressed protein FN3844-S Chr10 19547110 T-C 0 0 Single Base Substitution 0 HET FN3844-S Chr10 774014 774031 0 0 Deletion 17 Homo FN3844-S Chr11 1309001 1352000 0 0 Deletion 42999 LOC_Os11g03440 myb-like DNA-binding domain containing protein, putative, expressed FN3844-S Chr11 1309001 1352000 0 0 Deletion 42999 LOC_Os11g03450 expressed protein FN3844-S Chr11 1309001 1352000 0 0 Deletion 42999 LOC_Os11g03460 Mad3/BUB1 homology region 1 domain containing protein, expressed FN3844-S Chr11 1309001 1352000 0 0 Deletion 42999 LOC_Os11g03470 bifunctional aspartokinase/homoserine dehydrogenase, putative, expressed FN3844-S Chr11 1309001 1352000 0 0 Deletion 42999 LOC_Os11g03484 MATE efflux family protein, putative, expressed FN3844-S Chr11 1309001 1352000 0 0 Deletion 42999 LOC_Os11g03500 MATE efflux family protein, putative, expressed FN3844-S Chr11 16456444 A-T 0 0 Single Base Substitution 0 HET FN3844-S Chr11 16590731 Chr6 27543274 0 Translocation 0 LOC_Os06g45530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3844-S Chr11 16590731 Chr6 27543274 0 Translocation 0 LOC_Os11g28690 retrotransposon protein, putative, Ty3-gypsy subclass FN3844-S Chr11 25634717 25634717 0 0 Insertion 83 inframe_insertion HET LOC_Os11g42590 expressed protein FN3844-S Chr11 26879029 26879032 0 0 Deletion 3 disruptive_inframe_deletion Homo LOC_Os11g44430 protein kinase, putative, expressed FN3844-S Chr11 28651834 Chr1 18700066 0 Translocation 0 FN3844-S Chr11 7852865 7852873 0 0 Deletion 8 Homo FN3844-S Chr11 9981486 9981486 0 0 Insertion 4 HET FN3844-S Chr12 19516566 G-A 0 0 Single Base Substitution 0 HET FN3844-S Chr12 1993026 Chr11 2062704 0 Translocation 0 LOC_Os11g04840 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed FN3844-S Chr12 1993026 Chr11 2062704 0 Translocation 0 LOC_Os12g04700 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed FN3844-S Chr12 21277143 A-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os12g34950 retrotransposon protein, putative, unclassified, expressed FN3844-S Chr12 22687920 22687920 0 0 Insertion 1 frameshift_variant HET LOC_Os12g37010 retrotransposon protein, putative, unclassified, expressed FN3844-S Chr12 23254108 T-C 0 0 Single Base Substitution 0 HET FN3844-S Chr12 23928905 T-A 0 0 Single Base Substitution 0 HET FN3844-S Chr2 20806935 A-G 0 0 Single Base Substitution 0 HET FN3844-S Chr2 23022021 T-C 0 0 Single Base Substitution 0 Homo FN3844-S Chr2 25993375 G-A 0 0 Single Base Substitution 0 HET FN3844-S Chr2 26425386 C-T 0 0 Single Base Substitution 0 HET FN3844-S Chr2 30945038 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g50660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3844-S Chr2 31282029 G-A 0 0 Single Base Substitution 0 HET FN3844-S Chr2 31282030 C-T 0 0 Single Base Substitution 0 HET FN3844-S Chr2 35867711 C-T 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os02g58710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3844-S Chr2 379397 379397 0 0 Insertion 1 HET FN3844-S Chr2 7527627 C-T 0 0 Single Base Substitution 0 HET FN3844-S Chr3 16299822 16299826 0 0 Deletion 4 HET FN3844-S Chr3 17841557 C-T 0 0 Single Base Substitution 0 Homo FN3844-S Chr3 25044447 G-A 0 0 Single Base Substitution 0 Homo FN3844-S Chr3 27662649 28086899 0 0 Inversion 0 LOC_Os03g48520 PB1 domain containing protein, expressed FN3844-S Chr3 27662649 28086899 0 0 Inversion 0 LOC_Os03g49340 transposon protein, putative, Mariner sub-class, expressed FN3844-S Chr3 3409926 3939338 0 0 Inversion 0 LOC_Os03g06710 PPR repeat domain containing protein, putative, expressed FN3844-S Chr3 3409926 3939338 0 0 Inversion 0 LOC_Os03g07750 expressed protein FN3844-S Chr3 3409947 3939395 0 0 Inversion 0 LOC_Os03g06710 PPR repeat domain containing protein, putative, expressed FN3844-S Chr3 3409947 3939395 0 0 Inversion 0 LOC_Os03g07750 expressed protein FN3844-S Chr3 35202256 C-T 0 0 Single Base Substitution 0 Homo FN3844-S Chr3 36113949 T-A 0 0 Single Base Substitution 0 HET FN3844-S Chr4 13541927 13541929 0 0 Deletion 2 HET FN3844-S Chr4 23586670 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g39570 WRKY35, expressed FN3844-S Chr4 25489281 T-A 0 0 Single Base Substitution 0 HET FN3844-S Chr4 26984603 Chr2 10380324 0 Translocation 0 LOC_Os02g17920 glyoxalase family protein, putative, expressed FN3844-S Chr4 26984606 Chr2 10379388 0 Translocation 0 LOC_Os02g17920 glyoxalase family protein, putative, expressed FN3844-S Chr4 31909143 G-A 0 0 Single Base Substitution 0 HET FN3844-S Chr4 31920664 31920669 0 0 Deletion 5 HET FN3844-S Chr5 16415512 C-T 0 0 Single Base Substitution 0 HET FN3844-S Chr5 27019048 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g46680 retrotransposon protein, putative, unclassified FN3844-S Chr5 4292654 4904369 0 0 Inversion 0 LOC_Os05g07920 transposon protein, putative, unclassified, expressed FN3844-S Chr5 4292654 4904369 0 0 Inversion 0 LOC_Os05g08880 retrotransposon protein, putative, unclassified, expressed FN3844-S Chr5 4292666 4904374 0 0 Inversion 0 LOC_Os05g07920 transposon protein, putative, unclassified, expressed FN3844-S Chr5 4292666 4904374 0 0 Inversion 0 LOC_Os05g08880 retrotransposon protein, putative, unclassified, expressed FN3844-S Chr5 4900078 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g08870 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3844-S Chr5 722422 Chr1 19462834 0 Translocation 0 FN3844-S Chr5 812982 T-C 0 0 Single Base Substitution 0 HET FN3844-S Chr5 840507 840513 0 0 Deletion 6 Homo FN3844-S Chr6 1141680 G-A 0 0 Single Base Substitution 0 Homo FN3844-S Chr6 16613981 A-G 0 0 Single Base Substitution 0 HET FN3844-S Chr6 2768036 T-G 0 0 Single Base Substitution 0 Homo FN3844-S Chr6 28607046 28607046 0 0 Insertion 402 HET FN3844-S Chr7 15143401 A-T 0 0 Single Base Substitution 0 HET FN3844-S Chr7 4061308 4061311 0 0 Deletion 3 HET FN3844-S Chr7 7060113 7060116 0 0 Deletion 3 HET FN3844-S Chr7 7392101 G-A 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os07g12880 transposon protein, putative, Pong sub-class, expressed FN3844-S Chr8 10668730 Chr6 18881069 0 Translocation 0 LOC_Os06g32470 retrotransposon protein, putative, unclassified, expressed FN3844-S Chr8 1121195 C-T 0 0 Single Base Substitution 0 HET FN3844-S Chr8 15286949 15286949 0 0 Insertion 28 HET FN3844-S Chr8 18726072 18726090 0 0 Deletion 18 Homo FN3844-S Chr8 3639683 3639686 0 0 Deletion 3 HET FN3844-S Chr9 10370589 Chr4 14572701 0 Translocation 0 FN3844-S Chr9 20564720 A-T 0 0 Single Base Substitution 0 Homo FN3844-S Chr9 287140 G-A 0 0 Single Base Substitution 0 HET FN3844-S Chr9 399320 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g01560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed