FN3846-S Chr1 27296395 C-A 0 0 Single Base Substitution 0 HET FN3846-S Chr1 29655660 A-C 0 0 Single Base Substitution 0 HET FN3846-S Chr1 30432103 G-A 0 0 Single Base Substitution 0 Homo FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63310 DUF740 domain containing protein, expressed FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63320 transposon protein, putative, CACTA, En/Spm sub-class FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63354 ELM2 domain containing protein, putative, expressed FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63370 hypothetical protein FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63380 transposon protein, putative, unclassified, expressed FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63393 expressed protein FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63400 PPR repeat containing protein, expressed FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63410 expressed protein FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63420 OsFBL4 - F-box domain and LRR containing protein, expressed FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63430 expressed protein FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63444 expressed protein FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63460 MYB family transcription factor, putative, expressed FN3846-S Chr1 36696001 36780000 0 0 Deletion 83999 LOC_Os01g63470 C2 domain containing protein, expressed FN3846-S Chr1 42744668 G-A 0 0 Single Base Substitution 0 HET FN3846-S Chr10 11204920 T-C 0 0 Single Base Substitution 0 HET FN3846-S Chr10 5526146 Chr4 22658458 0 Translocation 0 LOC_Os04g38070 retrotransposon protein, putative, unclassified, expressed FN3846-S Chr11 11682452 G-A 0 0 Single Base Substitution 0 HET FN3846-S Chr11 22540750 Chr5 1811965 0 Translocation 0 FN3846-S Chr11 23086315 Chr2 15835210 0 Translocation 0 FN3846-S Chr11 23086899 Chr2 15835197 0 Translocation 0 FN3846-S Chr11 24621617 Chr8 9667766 0 Translocation 0 LOC_Os08g15880 NBS-LRR disease resistance protein, putative, expressed FN3846-S Chr11 27240913 T-C 0 0 Single Base Substitution 0 HET FN3846-S Chr11 7552012 T-A 0 0 Single Base Substitution 0 Homo FN3846-S Chr11 9697248 9697352 0 0 Deletion 104 frameshift_variant&splice_donor_variant&splice_region_variant&intron_variant HET LOC_Os11g17390 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3846-S Chr12 20016157 A-G 0 0 Single Base Substitution 0 HET FN3846-S Chr12 20988909 20988910 0 0 Deletion 1 frameshift_variant HET LOC_Os12g34630 retrotransposon protein, putative, unclassified, expressed FN3846-S Chr12 2247326 2247529 0 0 Inversion 0 LOC_Os12g05110 pyruvate kinase, putative, expressed FN3846-S Chr12 24409074 A-C 0 0 Single Base Substitution 0 HET FN3846-S Chr12 5390147 C-T 0 0 Single Base Substitution 0 HET FN3846-S Chr12 6047336 Chr6 22504219 0 Translocation 0 FN3846-S Chr2 12375819 12375945 0 0 Inversion 0 FN3846-S Chr2 15626663 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g26614 retrotransposon protein, putative, unclassified, expressed FN3846-S Chr2 26713013 C-T 0 0 Single Base Substitution 0 HET FN3846-S Chr2 28377305 A-T 0 0 Single Base Substitution 0 HET FN3846-S Chr2 34000200 34000200 0 0 Insertion 2 HET FN3846-S Chr3 13141964 13141974 0 0 Deletion 10 HET FN3846-S Chr3 19661781 C-T 0 0 Single Base Substitution 0 HET FN3846-S Chr3 21264895 T-C 0 0 Single Base Substitution 0 HET FN3846-S Chr3 2987804 3390177 0 0 Inversion 0 LOC_Os03g05980 40S ribosomal protein S9-2, putative, expressed FN3846-S Chr3 33042642 T-G 0 0 Single Base Substitution 0 HET FN3846-S Chr3 34562246 G-A 0 0 Single Base Substitution 0 HET FN3846-S Chr3 5834194 5834213 0 0 Deletion 19 Homo FN3846-S Chr3 6978587 C-A 0 0 Single Base Substitution 0 HET FN3846-S Chr4 12428208 T-C 0 0 Single Base Substitution 0 HET FN3846-S Chr4 13009344 C-G 0 0 Single Base Substitution 0 HET FN3846-S Chr4 13564858 G-A 0 0 Single Base Substitution 0 HET FN3846-S Chr4 16559906 T-C 0 0 Single Base Substitution 0 HET FN3846-S Chr4 24534650 24534651 0 0 Deletion 1 frameshift_variant HET LOC_Os04g41350 amino acid transporter, putative, expressed FN3846-S Chr4 25134816 25134825 0 0 Deletion 9 Homo FN3846-S Chr4 29009915 29009931 0 0 Deletion 16 frameshift_variant Homo LOC_Os04g48660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3846-S Chr4 30427724 A-T 0 0 Single Base Substitution 0 HET FN3846-S Chr4 7720278 8000464 0 0 Inversion 0 LOC_Os04g13840 retrotransposon protein, putative, unclassified FN3846-S Chr4 7720329 8000565 0 0 Inversion 0 LOC_Os04g13840 retrotransposon protein, putative, unclassified FN3846-S Chr5 13901171 G-A 0 0 Single Base Substitution 0 Homo FN3846-S Chr5 16022350 A-T 0 0 Single Base Substitution 0 HET FN3846-S Chr5 302132 302133 0 0 Deletion 1 Homo FN3846-S Chr5 818597 A-T 0 0 Single Base Substitution 0 Homo FN3846-S Chr6 17214012 17214012 0 0 Insertion 2 HET FN3846-S Chr6 1898196 G-T 0 0 Single Base Substitution 0 HET FN3846-S Chr6 19904829 G-A 0 0 Single Base Substitution 0 Homo FN3846-S Chr6 25334967 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g42200 retrotransposon protein, putative, unclassified, expressed FN3846-S Chr6 29788440 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g49150 exostosin, putative, expressed FN3846-S Chr6 30400453 Chr5 3356118 0 Translocation 0 FN3846-S Chr6 30401103 Chr5 1997893 0 Translocation 0 FN3846-S Chr6 4595272 A-G 0 0 Single Base Substitution 0 Homo FN3846-S Chr6 5495275 A-G 0 0 Single Base Substitution 0 Homo FN3846-S Chr6 8917013 8917032 0 0 Deletion 19 Homo FN3846-S Chr7 12109618 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g20930 retrotransposon protein, putative, unclassified FN3846-S Chr7 13562933 A-G 0 0 Single Base Substitution 0 HET FN3846-S Chr7 17676366 G-A 0 0 Single Base Substitution 0 HET FN3846-S Chr7 2266667 2539330 0 0 Inversion 0 LOC_Os07g05470 AIR9 protein, putative, expressed FN3846-S Chr7 2266676 2309355 0 0 Inversion 0 FN3846-S Chr7 27218674 T-C 0 0 Single Base Substitution 0 Homo FN3846-S Chr7 28111658 G-A 0 0 Single Base Substitution 0 HET FN3846-S Chr7 4419971 4419971 0 0 Insertion 2 HET FN3846-S Chr7 5650072 5650385 0 0 Inversion 0 LOC_Os07g10490 zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed FN3846-S Chr7 6045904 6045918 0 0 Deletion 14 HET FN3846-S Chr7 888352 888486 0 0 Inversion 0 FN3846-S Chr7 8914132 G-A 0 0 Single Base Substitution 0 HET FN3846-S Chr7 9194280 G-A 0 0 Single Base Substitution 0 HET FN3846-S Chr8 12575994 12575994 0 0 Insertion 1 HET FN3846-S Chr8 1520084 T-A 0 0 Single Base Substitution 0 HET FN3846-S Chr8 17577547 17577548 0 0 Deletion 1 Homo FN3846-S Chr8 23428757 23428758 0 0 Deletion 1 Homo FN3846-S Chr8 24554793 A-T 0 0 Single Base Substitution 0 HET FN3846-S Chr8 6075144 Chr5 8208588 0 Translocation 0 LOC_Os05g14510 retrotransposon protein, putative, unclassified, expressed FN3846-S Chr8 6075144 Chr5 8208588 0 Translocation 0 LOC_Os08g10360 retrotransposon protein, putative, unclassified, expressed FN3846-S Chr9 2255937 G-A 0 0 Single Base Substitution 0 HET FN3846-S Chr9 4170697 4170982 0 0 Inversion 0 LOC_Os09g08072 glycosyl hydrolases, putative, expressed FN3846-S Chr9 662315 G-A 0 0 Single Base Substitution 0 HET FN3846-S Chr9 837761 Chr3 2987769 0 Translocation 0 LOC_Os03g05980 40S ribosomal protein S9-2, putative, expressed FN3846-S Chr9 839093 Chr3 3390174 0 Translocation 0