FN3869-S Chr1 16907493 16907495 0 0 Deletion 2 frameshift_variant HET LOC_Os01g30956 retrotransposon protein, putative, unclassified, expressed FN3869-S Chr1 41827538 G-A 0 0 Single Base Substitution 0 Homo FN3869-S Chr1 4203521 C-G 0 0 Single Base Substitution 0 HET FN3869-S Chr1 4203522 A-G 0 0 Single Base Substitution 0 HET FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74360 26S proteasome non-ATPase regulatory subunit 6, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74370 domain of unknown function DUF966 domain containing protein, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74380 hypothetical protein FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74390 transposon protein, putative, unclassified FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74400 transposon protein, putative, unclassified, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74410 MYB family transcription factor, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74430 expressed protein FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74440 OsMADS79 - MADS-box family gene with M-alpha type-box, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74450 aquaporin protein, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74460 vacuolar fusion protein MON1 homolog A, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74470 ABC transporter, ATP-binding protein, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74480 cupin domain containing protein, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74490 heavy metal-associated domain containing protein, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74500 expressed protein FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74510 KIP1, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74520 methyltransferase domain containing protein, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74530 protein phosphatase 2C, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74540 GATA zinc finger domain containing protein, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74550 transposon protein, putative, unclassified, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74560 transposon protein, putative, Pong sub-class, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74570 tetraspanin family protein, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74580 dnaJ homolog subfamily C member, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74590 MYB family transcription factor, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74600 vegetative storage protein, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74610 zinc finger, C3HC4 type domain containing protein, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74620 expressed protein FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74630 expressed protein FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74640 mitochondrial carrier protein, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74650 cysteine synthase, mitochondrial precursor, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74660 dihydroflavonol-4-reductase, putative, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74670 expressed protein FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74680 retrotransposon protein, putative, unclassified, expressed FN3869-S Chr1 43077001 43271000 0 0 Deletion 193999 LOC_Os01g74690 retrotransposon protein, putative, unclassified, expressed FN3869-S Chr10 13151484 A-G 0 0 Single Base Substitution 0 Homo FN3869-S Chr10 1825212 T-C 0 0 Single Base Substitution 0 HET FN3869-S Chr10 22169754 A-G 0 0 Single Base Substitution 0 HET FN3869-S Chr10 22753561 22753564 0 0 Deletion 3 HET FN3869-S Chr11 28789263 C-T 0 0 Single Base Substitution 0 HET FN3869-S Chr11 5832180 C-T 0 0 Single Base Substitution 0 Homo FN3869-S Chr12 13445303 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g23700 cyclin-dependent kinase G-2, putative, expressed FN3869-S Chr12 14712631 G-C 0 0 Single Base Substitution 0 HET FN3869-S Chr12 21211813 21211819 0 0 Deletion 6 frameshift_variant&splice_acceptor_variant&splice_region_variant&intron_variant Homo LOC_Os12g34850 Fibronectin type III domain containing protein, expressed FN3869-S Chr12 24959001 24966000 0 0 Deletion 6999 LOC_Os12g40300 SKP1, putative, expressed FN3869-S Chr12 24959001 24966000 0 0 Deletion 6999 LOC_Os12g40310 OsFBX458 - F-box domain containing protein, expressed FN3869-S Chr12 24959001 24966000 0 0 Deletion 6999 LOC_Os12g40320 OsFBX459 - F-box domain containing protein, expressed FN3869-S Chr12 9293109 G-A 0 0 Single Base Substitution 0 Homo FN3869-S Chr2 19817512 T-C 0 0 Single Base Substitution 0 Homo FN3869-S Chr2 23416620 G-C 0 0 Single Base Substitution 0 HET FN3869-S Chr2 34922700 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os02g57010 RNA recognition motif containing protein, putative, expressed FN3869-S Chr2 3695712 3695712 0 0 Insertion 2 HET FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07310 argonaute, putative, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07320 expressed protein FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07330 expressed protein FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07340 HEAT repeat family protein, putative, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07350 inositol-1-monophosphatase, putative, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07360 pentatricopeptide containing protein, putative, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07370 retrotransposon protein, putative, unclassified, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07380 retrotransposon protein, putative, unclassified, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07390 retrotransposon, putative, centromere-specific, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07400 retrotransposon protein, putative, unclassified, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07410 glycine cleavage system H protein, putative, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07420 splicing factor, arginine/serine-rich 12, putative, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07430 OsMADS29 - MADS-box family gene with MIKCc type-box, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07440 DEFL78 - Defensin and Defensin-like DEFL family, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07450 core histone H2A/H2B/H3/H4, putative, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07460 expressed protein FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07480 transglycosylase SLT domain containing protein, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07490 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07495 expressed protein FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07510 retrotransposon protein, putative, Ty3-gypsy subclass FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3869-S Chr2 3744001 3899000 0 0 Deletion 154999 LOC_Os02g07530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3869-S Chr2 3909001 3930000 0 0 Deletion 20999 LOC_Os02g07550 DEFL1 - Defensin and Defensin-like DEFL family, expressed FN3869-S Chr2 3909001 3930000 0 0 Deletion 20999 LOC_Os02g07560 transposon protein, putative, unclassified, expressed FN3869-S Chr2 3909001 3930000 0 0 Deletion 20999 LOC_Os02g07570 transposon protein, putative, unclassified, expressed FN3869-S Chr2 3909001 3930000 0 0 Deletion 20999 LOC_Os02g07575 expressed protein FN3869-S Chr2 3909001 3930000 0 0 Deletion 20999 LOC_Os02g07580 expressed protein FN3869-S Chr3 10370130 C-A 0 0 Single Base Substitution 0 Homo FN3869-S Chr3 1053644 Chr1 2701864 0 Translocation 0 LOC_Os01g05660 expressed protein FN3869-S Chr3 14250001 14262000 0 0 Deletion 11999 LOC_Os03g24960 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN3869-S Chr3 14250001 14262000 0 0 Deletion 11999 LOC_Os03g24970 SWIM zinc finger family protein, putative FN3869-S Chr3 14250001 14262000 0 0 Deletion 11999 LOC_Os03g24980 SWIM zinc finger family protein, putative FN3869-S Chr3 14250001 14262000 0 0 Deletion 11999 LOC_Os03g24990 ulp1 protease family, C-terminal catalytic domain containing protein FN3869-S Chr3 16596336 G-A 0 0 Single Base Substitution 0 HET FN3869-S Chr3 26539745 26539746 0 0 Deletion 1 HET FN3869-S Chr3 5715374 T-G 0 0 Single Base Substitution 0 HET FN3869-S Chr3 6982178 T-A 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os03g12940 OsFBO13 - F-box and other domain containing protein, expressed FN3869-S Chr4 11843023 T-G 0 0 Single Base Substitution 0 HET FN3869-S Chr4 14939507 Chr3 20879973 0 Translocation 0 LOC_Os04g25750 retrotransposon protein, putative, unclassified FN3869-S Chr4 1935675 1935676 0 0 Deletion 1 HET FN3869-S Chr4 21255001 21262000 0 0 Deletion 6999 LOC_Os04g34976 SET domain containing protein, expressed FN3869-S Chr4 21268215 T-C 0 0 Single Base Substitution 0 HET FN3869-S Chr4 26535161 26535507 0 0 Inversion 0 LOC_Os04g44820 zinc finger, C3HC4 type domain containing protein, expressed FN3869-S Chr4 2962584 2962593 0 0 Deletion 9 HET FN3869-S Chr4 4057488 4089228 0 0 Inversion 0 LOC_Os04g07630 hypothetical protein FN3869-S Chr4 4057488 4089228 0 0 Inversion 0 LOC_Os04g07680 retrotransposon protein, putative, unclassified, expressed FN3869-S Chr5 11376785 11376787 0 0 Deletion 2 frameshift_variant HET LOC_Os05g19550 retrotransposon protein, putative, unclassified, expressed FN3869-S Chr5 6474237 6474238 0 0 Deletion 1 Homo FN3869-S Chr5 8866403 A-G 0 0 Single Base Substitution 0 Homo FN3869-S Chr6 14656308 A-T 0 0 Single Base Substitution 0 HET FN3869-S Chr6 17186426 G-A 0 0 Single Base Substitution 0 Homo FN3869-S Chr6 2157001 2198000 0 0 Deletion 40999 LOC_Os06g04910 hydrolase, NUDIX family protein, expressed FN3869-S Chr6 2157001 2198000 0 0 Deletion 40999 LOC_Os06g04920 zinc finger family protein, putative, expressed FN3869-S Chr6 2157001 2198000 0 0 Deletion 40999 LOC_Os06g04930 expressed protein FN3869-S Chr6 2157001 2198000 0 0 Deletion 40999 LOC_Os06g04940 early nodulin 93 ENOD93 protein, putative, expressed FN3869-S Chr6 2157001 2198000 0 0 Deletion 40999 LOC_Os06g04950 early nodulin 93 ENOD93 protein, putative, expressed FN3869-S Chr6 2157001 2198000 0 0 Deletion 40999 LOC_Os06g04960 expressed protein FN3869-S Chr6 2157001 2198000 0 0 Deletion 40999 LOC_Os06g04970 expressed protein FN3869-S Chr6 2157001 2198000 0 0 Deletion 40999 LOC_Os06g04980 OsFBX185 - F-box domain containing protein, expressed FN3869-S Chr6 31123345 Chr3 36205767 0 Translocation 0 FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51390 expressed protein FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51400 expressed protein FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51410 OsPOP15 - Putative Prolyl Oligopeptidase homologue, expressed FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51420 coiled-coil domain-containing protein 12, putative, expressed FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51430 signal peptide peptidase-like 2B, putative, expressed FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51450 PHD-finger domain containing protein, expressed FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51460 white-brown complex homolog protein, putative, expressed FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51470 expressed protein FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51480 expressed protein FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51490 PHD-finger domain containing protein, putative, expressed FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51500 expressed protein FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51510 expressed protein FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51520 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51524 expressed protein FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51530 ribosomal protein L29, putative, expressed FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51540 retrotransposon protein, putative, unclassified, expressed FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51550 retrotransposon protein, putative, unclassified, expressed FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51560 retrotransposon, putative, centromere-specific FN3869-S Chr6 31129001 31249000 0 0 Deletion 119999 LOC_Os06g51570 retrotransposon protein, putative, unclassified, expressed FN3869-S Chr7 12916056 12916060 0 0 Deletion 4 Homo FN3869-S Chr7 18987193 A-G 0 0 Single Base Substitution 0 Homo FN3869-S Chr7 19435961 19435962 0 0 Deletion 1 Homo FN3869-S Chr7 21472993 21472994 0 0 Deletion 1 frameshift_variant Homo LOC_Os07g35880 beta-amylase, putative, expressed FN3869-S Chr7 21631149 21631151 0 0 Deletion 2 Homo FN3869-S Chr7 6526429 6526429 0 0 Insertion 1 HET FN3869-S Chr7 9735001 9758000 0 0 Deletion 22999 LOC_Os07g16590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3869-S Chr7 9735001 9758000 0 0 Deletion 22999 LOC_Os07g16600 expressed protein FN3869-S Chr7 9735001 9758000 0 0 Deletion 22999 LOC_Os07g16610 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3869-S Chr7 9735001 9758000 0 0 Deletion 22999 LOC_Os07g16620 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3869-S Chr8 17714278 A-T 0 0 Single Base Substitution 0 HET FN3869-S Chr8 20646116 Chr7 1745293 0 Translocation 0 LOC_Os07g04110 legume lectins beta domain containing protein, expressed FN3869-S Chr8 20809514 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g33360 transposon protein, putative, Mariner sub-class, expressed FN3869-S Chr8 21031610 Chr1 43232833 0 Translocation 0 LOC_Os01g74650 cysteine synthase, mitochondrial precursor, putative, expressed FN3869-S Chr8 21032293 21558957 0 0 Inversion 0 FN3869-S Chr8 21558934 Chr1 43076649 0 Translocation 0 FN3869-S Chr8 8748252 A-C 0 0 Single Base Substitution 0 HET FN3869-S Chr9 12526450 12526455 0 0 Deletion 5 Homo FN3869-S Chr9 17271819 Chr4 4107386 0 Translocation 0 LOC_Os04g07720 retrotransposon protein, putative, unclassified, expressed FN3869-S Chr9 20434699 A-G 0 0 Single Base Substitution 0 HET FN3869-S Chr9 219265 219265 0 0 Insertion 1 HET FN3869-S Chr9 6389790 G-A 0 0 Single Base Substitution 0 HET FN3869-S Chr9 8065574 C-A 0 0 Single Base Substitution 0 Homo