FN3871-S Chr1 13873512 13873513 0 0 Deletion 1 frameshift_variant HET LOC_Os01g24630 transposon protein, putative, unclassified, expressed FN3871-S Chr1 15750005 15750005 0 0 Insertion 7 HET FN3871-S Chr1 23446453 T-A 0 0 Single Base Substitution 0 HET FN3871-S Chr1 25279813 25279814 0 0 Deletion 1 HET FN3871-S Chr1 30410246 30410247 0 0 Deletion 1 Homo FN3871-S Chr1 31814633 A-G 0 0 Single Base Substitution 0 Homo FN3871-S Chr10 1331033 Chr7 28606607 0 Translocation 0 LOC_Os07g47890 retrotransposon protein, putative, unclassified FN3871-S Chr10 1331033 Chr7 28606607 0 Translocation 0 LOC_Os10g03150 retrotransposon protein, putative, unclassified FN3871-S Chr10 20441714 20441715 0 0 Deletion 1 HET FN3871-S Chr10 4623832 Chr3 32491470 0 Translocation 0 FN3871-S Chr10 5113844 Chr4 2989348 0 Translocation 0 FN3871-S Chr10 5163401 A-T 0 0 Single Base Substitution 0 HET FN3871-S Chr10 5265479 Chr6 11799779 0 Translocation 0 FN3871-S Chr10 6473780 6473781 0 0 Deletion 1 HET FN3871-S Chr10 9807979 9807979 0 0 Insertion 4 HET FN3871-S Chr11 15305374 15305375 0 0 Deletion 1 HET FN3871-S Chr11 17520066 T-A 0 0 Single Base Substitution 0 HET FN3871-S Chr11 18009691 T-C 0 0 Single Base Substitution 0 HET FN3871-S Chr11 21151999 A-T 0 0 Single Base Substitution 0 Homo FN3871-S Chr11 22542297 Chr9 15589160 0 Translocation 0 LOC_Os09g25960 glutamate receptor, putative, expressed FN3871-S Chr11 22749654 C-T 0 0 Single Base Substitution 0 Homo FN3871-S Chr11 2523732 2523732 0 0 Insertion 2 HET FN3871-S Chr12 1097345 G-A 0 0 Single Base Substitution 0 Homo FN3871-S Chr12 1097346 G-A 0 0 Single Base Substitution 0 Homo FN3871-S Chr12 13446113 A-G 0 0 Single Base Substitution 0 Homo FN3871-S Chr12 15096012 15096013 0 0 Deletion 1 Homo FN3871-S Chr12 18878616 G-A 0 0 Single Base Substitution 0 Homo FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33460 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33470 expressed protein FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33480 retrotransposon, putative, centromere-specific, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33490 retrotransposon, putative, centromere-specific, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33500 retrotransposon, putative, centromere-specific, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33510 retrotransposon, putative, centromere-specific FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33520 retrotransposon, putative, centromere-specific, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33540 retrotransposon protein, putative, unclassified, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33550 retrotransposon protein, putative, unclassified, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33560 retrotransposon protein, putative, unclassified, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33570 retrotransposon protein, putative, unclassified FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33590 hypothetical protein FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33600 expressed protein FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33610 phenylalanine ammonia-lyase, putative, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33620 transposon protein, putative, CACTA, En/Spm sub-class FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33630 retrotransposon, putative, centromere-specific, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33640 retrotransposon, putative, centromere-specific, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33650 retrotransposon protein, putative, unclassified, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33660 retrotransposon protein, putative, unclassified, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33670 retrotransposon protein, putative, unclassified FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33730 expressed protein FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33740 retrotransposon protein, putative, unclassified FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33750 retrotransposon protein, putative, unclassified FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33760 retrotransposon protein, putative, unclassified FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33770 expressed protein FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33780 expressed protein FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33790 ligA, putative, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33800 retrotransposon protein, putative, unclassified FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33820 retrotransposon protein, putative, unclassified FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33830 OsFBX449 - F-box domain containing protein, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33840 hypothetical protein FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33859 retrotransposon protein, putative, unclassified, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33870 retrotransposon protein, putative, unclassified, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33890 retrotransposon protein, putative, Ty3-gypsy subclass FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3871-S Chr12 20219001 20448000 0 0 Deletion 228999 LOC_Os12g33920 retrotransposon protein, putative, Ty3-gypsy subclass FN3871-S Chr12 22023464 Chr8 27373391 0 Translocation 0 FN3871-S Chr12 26389806 26521752 0 0 Inversion 0 LOC_Os12g42680 retrotransposon protein, putative, unclassified, expressed FN3871-S Chr12 3252388 C-T 0 0 Single Base Substitution 0 Homo FN3871-S Chr2 29727546 29727547 0 0 Deletion 1 HET FN3871-S Chr2 29775951 T-C 0 0 Single Base Substitution 0 HET FN3871-S Chr2 29775953 T-C 0 0 Single Base Substitution 0 HET FN3871-S Chr3 13929172 13929180 0 0 Deletion 8 Homo FN3871-S Chr3 19429898 C-T 0 0 Single Base Substitution 0 HET FN3871-S Chr3 20810676 20810677 0 0 Deletion 1 frameshift_variant HET LOC_Os03g37500 retrotransposon protein, putative, unclassified, expressed FN3871-S Chr3 24374368 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g43610 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3871-S Chr3 26644574 C-T 0 0 Single Base Substitution 0 HET FN3871-S Chr3 6506541 G-A 0 0 Single Base Substitution 0 Homo FN3871-S Chr4 102985 102986 0 0 Deletion 1 HET FN3871-S Chr4 129337 129349 0 0 Deletion 12 HET FN3871-S Chr4 13541927 13541929 0 0 Deletion 2 HET FN3871-S Chr4 30312754 30312756 0 0 Deletion 2 frameshift_variant&splice_region_variant Homo LOC_Os04g51180 GPR89A, putative, expressed FN3871-S Chr4 3093663 3093665 0 0 Deletion 2 HET FN3871-S Chr4 31420859 G-A 0 0 Single Base Substitution 0 Homo FN3871-S Chr4 32678204 32678207 0 0 Deletion 3 HET FN3871-S Chr4 34950318 C-T 0 0 Single Base Substitution 0 Homo FN3871-S Chr4 4540409 4540415 0 0 Deletion 6 Homo FN3871-S Chr4 7947891 7947891 0 0 Insertion 1 HET FN3871-S Chr5 10686298 10686299 0 0 Deletion 1 HET FN3871-S Chr5 10844153 Chr3 25789799 0 Translocation 0 LOC_Os05g18720 retrotransposon protein, putative, unclassified, expressed FN3871-S Chr5 15409770 C-T 0 0 Single Base Substitution 0 HET FN3871-S Chr5 24181664 24181664 0 0 Insertion 19 HET FN3871-S Chr5 26395772 26871530 0 0 Inversion 0 LOC_Os05g45530 expressed protein FN3871-S Chr5 26395795 26871546 0 0 Inversion 0 LOC_Os05g45530 expressed protein FN3871-S Chr6 19658001 19713000 0 0 Deletion 54999 LOC_Os06g33800 hypothetical protein FN3871-S Chr6 19658001 19713000 0 0 Deletion 54999 LOC_Os06g33810 zinc finger protein, putative, expressed FN3871-S Chr6 19658001 19713000 0 0 Deletion 54999 LOC_Os06g33820 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3871-S Chr6 19658001 19713000 0 0 Deletion 54999 LOC_Os06g33830 transposon protein, putative, CACTA, En/Spm sub-class FN3871-S Chr6 19658001 19713000 0 0 Deletion 54999 LOC_Os06g33840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3871-S Chr6 19658001 19713000 0 0 Deletion 54999 LOC_Os06g33850 retrotransposon protein, putative, unclassified FN3871-S Chr6 19658001 19713000 0 0 Deletion 54999 LOC_Os06g33860 retrotransposon protein, putative, unclassified, expressed FN3871-S Chr6 19658001 19713000 0 0 Deletion 54999 LOC_Os06g33870 transposon protein, putative, CACTA, En/Spm sub-class FN3871-S Chr6 19658001 19713000 0 0 Deletion 54999 LOC_Os06g33880 expressed protein FN3871-S Chr6 19658001 19713000 0 0 Deletion 54999 LOC_Os06g33890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3871-S Chr6 2783698 Chr2 31115994 0 Translocation 0 LOC_Os06g06050 OsFBL27 - F-box domain and LRR containing protein, expressed FN3871-S Chr6 2783704 Chr2 31116564 0 Translocation 0 LOC_Os06g06050 OsFBL27 - F-box domain and LRR containing protein, expressed FN3871-S Chr6 6555233 T-A 0 0 Single Base Substitution 0 HET FN3871-S Chr7 15500282 15500283 0 0 Deletion 1 Homo FN3871-S Chr7 28641946 G-T 0 0 Single Base Substitution 0 HET FN3871-S Chr7 6650591 6650592 0 0 Deletion 1 HET FN3871-S Chr7 7430685 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g12950 transposon protein, putative, unclassified, expressed FN3871-S Chr8 11819534 11819534 0 0 Insertion 1 HET FN3871-S Chr8 5979870 Chr3 35071692 0 Translocation 0 FN3871-S Chr8 985230 Chr1 25907714 0 Translocation 0 LOC_Os08g02460 expressed protein